Wall clock time and date at job start Tue Mar 31 2020 14:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.52637 * 2 1 4 4 C 1.53191 * 109.49784 * 120.08290 * 2 1 3 5 5 N 1.46928 * 108.89220 * 174.51323 * 4 2 1 6 6 C 1.34776 * 120.62798 * 126.46855 * 5 4 2 7 7 O 1.21580 * 120.00340 * 354.42173 * 6 5 4 8 8 N 1.34783 * 120.00074 * 174.42576 * 6 5 4 9 9 C 1.39453 * 120.00426 * 185.17937 * 8 6 5 10 10 C 1.38635 * 119.65252 * 185.25045 * 9 8 6 11 11 C 1.40824 * 118.67746 * 179.97438 * 10 9 8 12 12 C 1.41539 * 120.99490 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00651 * 325.60342 * 12 11 10 14 14 C 1.40037 * 119.99778 * 145.61213 * 12 11 10 15 15 N 1.30740 * 120.00018 * 4.43142 * 14 12 11 16 16 Si 1.86797 * 120.00058 * 184.43262 * 14 12 11 17 17 H 1.48507 * 109.47157 * 89.99826 * 16 14 12 18 18 H 1.48502 * 109.47351 * 209.99547 * 16 14 12 19 19 H 1.48502 * 109.47226 * 329.99737 * 16 14 12 20 20 C 1.41157 * 118.00080 * 0.02562 * 11 10 9 21 21 C 1.36587 * 119.13343 * 359.97438 * 20 11 10 22 22 N 1.32069 * 121.25628 * 359.72949 * 21 20 11 23 23 C 1.46965 * 118.71628 * 306.64015 * 5 4 2 24 24 C 1.53194 * 108.88381 * 53.35803 * 23 5 4 25 25 C 1.53035 * 109.31381 * 305.43905 * 24 23 5 26 26 F 1.39901 * 109.46217 * 301.34901 * 25 24 23 27 27 F 1.39897 * 109.44987 * 181.38079 * 25 24 23 28 28 H 1.09003 * 109.46929 * 299.91997 * 1 2 3 29 29 H 1.09005 * 109.47143 * 59.91336 * 1 2 3 30 30 H 1.08995 * 109.47295 * 179.91721 * 1 2 3 31 31 H 1.08997 * 109.58717 * 294.37022 * 4 2 1 32 32 H 1.08996 * 109.58506 * 54.65390 * 4 2 1 33 33 H 0.97005 * 119.99487 * 5.17320 * 8 6 5 34 34 H 1.08008 * 120.66090 * 359.97438 * 10 9 8 35 35 H 0.97000 * 119.99716 * 180.02562 * 15 14 12 36 36 H 1.08003 * 120.43493 * 179.97438 * 20 11 10 37 37 H 1.08000 * 119.37254 * 179.97438 * 21 20 11 38 38 H 1.09001 * 109.46761 * 293.57170 * 23 5 4 39 39 H 1.09000 * 109.59160 * 173.21895 * 23 5 4 40 40 H 1.09009 * 109.48892 * 185.49227 * 24 23 5 41 41 H 1.08999 * 109.49748 * 65.39613 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2495 5 7 3.5045 -0.8321 1.1713 6 6 4.2806 -0.3914 2.1812 7 8 3.7797 0.1925 3.1227 8 7 5.6121 -0.5978 2.1474 9 6 6.4013 -0.2391 3.2397 10 6 7.7804 -0.3527 3.1562 11 6 8.5576 0.0158 4.2713 12 6 9.9694 -0.0800 4.2394 13 1 10.4443 -0.8779 3.6879 14 6 10.7505 0.8599 4.9233 15 7 10.1767 1.7737 5.6615 16 14 12.6123 0.8079 4.7807 17 1 13.0448 1.6499 3.6364 18 1 13.2194 1.3255 6.0333 19 1 13.0530 -0.5928 4.5591 20 6 7.8863 0.4835 5.4216 21 6 6.5227 0.5609 5.4103 22 7 5.8253 0.2122 4.3443 23 6 4.1052 -1.4268 -0.0309 24 6 3.5707 -0.6950 -1.2661 25 6 2.0408 -0.7231 -1.2484 26 9 1.5991 -2.0504 -1.2317 27 9 1.5499 -0.0829 -2.3914 28 1 -0.3633 0.5126 0.8907 29 1 -0.3634 0.5152 -0.8892 30 1 -0.3633 -1.0276 -0.0015 31 1 1.7638 -0.1580 2.1388 32 1 1.6032 -1.7207 1.2993 33 1 6.0213 -0.9960 1.3633 34 1 8.2495 -0.7166 2.2539 35 1 10.7177 2.4249 6.1349 36 1 8.4437 0.7763 6.2991 37 1 6.0051 0.9178 6.2884 38 1 3.8375 -2.4819 -0.0869 39 1 5.1895 -1.3247 0.0137 40 1 3.9333 -1.1898 -2.1672 41 1 3.9159 0.3388 -1.2541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871730826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:36 Heat of formation + Delta-G solvation = -83.951132 kcal Electronic energy + Delta-G solvation = -27596.111419 eV Core-core repulsion = 23340.011342 eV Total energy + Delta-G solvation = -4256.100076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.24754 -47.20142 -40.34703 -38.47839 -36.98505 -34.63508 -34.02263 -33.23371 -31.84696 -30.66144 -28.72247 -26.99706 -26.01066 -25.20601 -23.09877 -21.96957 -21.79064 -20.69712 -19.43037 -18.47118 -17.69756 -17.49833 -16.91350 -16.42757 -16.21461 -15.47759 -15.36040 -14.90564 -14.49908 -14.24203 -14.10886 -14.03322 -13.69350 -13.52697 -13.47005 -13.19250 -13.04222 -13.00901 -12.74644 -12.46986 -12.34017 -12.19195 -12.05495 -11.53452 -11.48219 -11.42337 -11.25981 -10.96828 -10.63118 -10.39061 -10.05159 -9.81231 -9.63186 -9.38594 -8.72945 -7.96133 -7.79723 -7.06033 -6.69836 -4.65432 2.61545 2.66242 2.77236 3.02509 3.06169 3.19221 3.44593 3.66016 3.73652 3.85640 3.89791 4.09208 4.13059 4.39661 4.70940 4.73316 4.90573 4.96577 5.02863 5.11602 5.26732 5.34331 5.50471 5.53025 5.60674 5.63378 5.73748 5.87926 5.88398 6.31517 6.47780 6.55750 6.72927 6.90934 7.02819 7.16540 7.39504 7.51756 7.89813 7.99572 8.20856 8.46377 8.71556 8.76252 8.98476 9.66011 10.15698 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.027102 B = 0.002614 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.881757 B =10708.538687 C =11348.808115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 H 0.104 0.896 4 C 0.138 3.862 5 N -0.640 5.640 6 C 0.698 3.302 7 O -0.524 6.524 8 N -0.669 5.669 9 C 0.359 3.641 10 C -0.296 4.296 11 C 0.146 3.854 12 C -0.461 4.461 13 H 0.079 0.921 14 C 0.074 3.926 15 N -0.801 5.801 16 Si 0.919 3.081 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.262 1.262 20 C -0.214 4.214 21 C 0.102 3.898 22 N -0.547 5.547 23 C 0.114 3.886 24 C -0.175 4.175 25 C 0.294 3.706 26 F -0.197 7.197 27 F -0.201 7.201 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.401 0.599 34 H 0.102 0.898 35 H 0.281 0.719 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.501 -4.587 -12.695 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 H 0.123 0.877 4 C 0.014 3.986 5 N -0.381 5.381 6 C 0.400 3.600 7 O -0.394 6.394 8 N -0.319 5.319 9 C 0.131 3.869 10 C -0.322 4.322 11 C 0.138 3.862 12 C -0.493 4.493 13 H 0.098 0.902 14 C -0.144 4.144 15 N -0.428 5.428 16 Si 0.743 3.257 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.186 1.186 20 C -0.237 4.237 21 C -0.049 4.049 22 N -0.266 5.266 23 C -0.011 4.011 24 C -0.214 4.214 25 C 0.258 3.742 26 F -0.178 7.178 27 F -0.181 7.181 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.238 0.762 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.800 -3.901 -11.786 17.832 hybrid contribution 1.974 -0.201 -0.883 2.172 sum -10.827 -4.102 -12.668 17.162 Atomic orbital electron populations 1.21764 0.92382 1.03243 1.03378 1.22562 0.98567 1.01788 0.93537 0.87729 1.21419 0.78551 1.00912 0.97689 1.47447 1.06198 1.66245 1.18181 1.15940 0.81502 0.80008 0.82596 1.91020 1.72033 1.43135 1.33211 1.42760 1.05536 1.64956 1.18635 1.17777 0.86563 0.95915 0.86694 1.21299 0.90888 1.19488 1.00534 1.17624 0.93320 0.86383 0.88886 1.19499 0.90538 1.11371 1.27925 0.90236 1.25925 1.01473 0.94314 0.92645 1.69721 1.37884 1.12948 1.22226 0.86146 0.81394 0.79631 0.78518 1.19449 1.20156 1.18586 1.22205 0.93767 1.07240 1.00516 1.21685 0.91729 0.97026 0.94464 1.67175 1.39731 1.20026 0.99691 1.21545 0.98658 0.97594 0.83257 1.22949 0.92241 1.05111 1.01085 1.21032 0.93198 0.75876 0.84109 1.92987 1.91171 1.36843 1.96792 1.93000 1.89703 1.81863 1.53573 0.90835 0.91506 0.91585 0.87301 0.90866 0.76211 0.88000 0.90811 0.84730 0.85887 0.90226 0.89064 0.88137 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.95 37.16 0.33 -0.88 16 2 C -0.14 -1.38 2.53 -90.50 -0.23 -1.61 16 3 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 4 C 0.14 1.57 5.52 -3.71 -0.02 1.55 16 5 N -0.64 -8.33 2.98 -178.47 -0.53 -8.86 16 6 C 0.70 12.68 8.25 -86.91 -0.72 11.97 16 7 O -0.52 -11.86 14.05 5.30 0.07 -11.78 16 8 N -0.67 -12.15 5.30 -15.86 -0.08 -12.24 16 9 C 0.36 8.30 7.41 -154.68 -1.15 7.15 16 10 C -0.30 -6.95 9.74 -38.46 -0.37 -7.33 16 11 C 0.15 3.79 5.57 -106.55 -0.59 3.20 16 12 C -0.46 -11.72 9.10 -37.65 -0.34 -12.06 16 13 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 14 C 0.07 1.79 5.44 -17.34 -0.09 1.70 16 15 N -0.80 -20.14 10.66 55.55 0.59 -19.55 16 16 Si 0.92 18.09 29.56 -169.99 -5.03 13.06 16 17 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 18 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 20 C -0.21 -5.51 8.72 -39.07 -0.34 -5.85 16 21 C 0.10 2.52 11.10 -18.05 -0.20 2.32 16 22 N -0.55 -13.87 7.89 -12.76 -0.10 -13.97 16 23 C 0.11 1.06 6.18 -3.69 -0.02 1.04 16 24 C -0.17 -1.44 5.62 -26.61 -0.15 -1.59 16 25 C 0.29 2.83 1.63 -26.69 -0.04 2.79 16 26 F -0.20 -2.06 15.64 2.25 0.04 -2.03 16 27 F -0.20 -2.13 16.50 2.25 0.04 -2.10 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.53 7.78 -51.93 -0.40 0.12 16 30 H 0.07 0.52 7.83 -51.93 -0.41 0.12 16 31 H 0.11 1.42 7.00 -51.93 -0.36 1.06 16 32 H 0.07 0.76 7.92 -51.93 -0.41 0.35 16 33 H 0.40 5.62 6.19 -40.82 -0.25 5.36 16 34 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 35 H 0.28 6.44 8.29 -40.82 -0.34 6.11 16 36 H 0.14 3.53 6.22 -52.48 -0.33 3.21 16 37 H 0.12 2.74 8.06 -52.49 -0.42 2.32 16 38 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 39 H 0.09 0.75 5.66 -51.93 -0.29 0.46 16 40 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 341.01 15.07 5.14 5.14 Total: -1.00 -31.72 341.01 -8.76 -40.48 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -4.95 Total: 9.46 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -3.94 Total: 2.39 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.12 Total: -54.62 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.07 Total: -11.78 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.07 Total: -4.13 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.72 -8.76 -40.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.472 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds