Wall clock time and date at job start Tue Mar 31 2020 14:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.52637 * 2 1 4 4 C 1.53191 * 109.49784 * 120.08290 * 2 1 3 5 5 N 1.46928 * 108.89220 * 174.51323 * 4 2 1 6 6 C 1.34776 * 120.62798 * 126.46855 * 5 4 2 7 7 O 1.21580 * 120.00340 * 354.42173 * 6 5 4 8 8 N 1.34783 * 120.00074 * 174.42576 * 6 5 4 9 9 C 1.39453 * 120.00426 * 185.17937 * 8 6 5 10 10 C 1.38635 * 119.65252 * 185.25045 * 9 8 6 11 11 C 1.40824 * 118.67746 * 179.97438 * 10 9 8 12 12 C 1.41539 * 120.99490 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00651 * 325.60342 * 12 11 10 14 14 C 1.40037 * 119.99778 * 145.61213 * 12 11 10 15 15 N 1.30740 * 120.00018 * 4.43142 * 14 12 11 16 16 Si 1.86797 * 120.00058 * 184.43262 * 14 12 11 17 17 H 1.48507 * 109.47157 * 89.99826 * 16 14 12 18 18 H 1.48502 * 109.47351 * 209.99547 * 16 14 12 19 19 H 1.48502 * 109.47226 * 329.99737 * 16 14 12 20 20 C 1.41157 * 118.00080 * 0.02562 * 11 10 9 21 21 C 1.36587 * 119.13343 * 359.97438 * 20 11 10 22 22 N 1.32069 * 121.25628 * 359.72949 * 21 20 11 23 23 C 1.46965 * 118.71628 * 306.64015 * 5 4 2 24 24 C 1.53194 * 108.88381 * 53.35803 * 23 5 4 25 25 C 1.53035 * 109.31381 * 305.43905 * 24 23 5 26 26 F 1.39901 * 109.46217 * 301.34901 * 25 24 23 27 27 F 1.39897 * 109.44987 * 181.38079 * 25 24 23 28 28 H 1.09003 * 109.46929 * 299.91997 * 1 2 3 29 29 H 1.09005 * 109.47143 * 59.91336 * 1 2 3 30 30 H 1.08995 * 109.47295 * 179.91721 * 1 2 3 31 31 H 1.08997 * 109.58717 * 294.37022 * 4 2 1 32 32 H 1.08996 * 109.58506 * 54.65390 * 4 2 1 33 33 H 0.97005 * 119.99487 * 5.17320 * 8 6 5 34 34 H 1.08008 * 120.66090 * 359.97438 * 10 9 8 35 35 H 0.97000 * 119.99716 * 180.02562 * 15 14 12 36 36 H 1.08003 * 120.43493 * 179.97438 * 20 11 10 37 37 H 1.08000 * 119.37254 * 179.97438 * 21 20 11 38 38 H 1.09001 * 109.46761 * 293.57170 * 23 5 4 39 39 H 1.09000 * 109.59160 * 173.21895 * 23 5 4 40 40 H 1.09009 * 109.48892 * 185.49227 * 24 23 5 41 41 H 1.08999 * 109.49748 * 65.39613 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2495 5 7 3.5045 -0.8321 1.1713 6 6 4.2806 -0.3914 2.1812 7 8 3.7797 0.1925 3.1227 8 7 5.6121 -0.5978 2.1474 9 6 6.4013 -0.2391 3.2397 10 6 7.7804 -0.3527 3.1562 11 6 8.5576 0.0158 4.2713 12 6 9.9694 -0.0800 4.2394 13 1 10.4443 -0.8779 3.6879 14 6 10.7505 0.8599 4.9233 15 7 10.1767 1.7737 5.6615 16 14 12.6123 0.8079 4.7807 17 1 13.0448 1.6499 3.6364 18 1 13.2194 1.3255 6.0333 19 1 13.0530 -0.5928 4.5591 20 6 7.8863 0.4835 5.4216 21 6 6.5227 0.5609 5.4103 22 7 5.8253 0.2122 4.3443 23 6 4.1052 -1.4268 -0.0309 24 6 3.5707 -0.6950 -1.2661 25 6 2.0408 -0.7231 -1.2484 26 9 1.5991 -2.0504 -1.2317 27 9 1.5499 -0.0829 -2.3914 28 1 -0.3633 0.5126 0.8907 29 1 -0.3634 0.5152 -0.8892 30 1 -0.3633 -1.0276 -0.0015 31 1 1.7638 -0.1580 2.1388 32 1 1.6032 -1.7207 1.2993 33 1 6.0213 -0.9960 1.3633 34 1 8.2495 -0.7166 2.2539 35 1 10.7177 2.4249 6.1349 36 1 8.4437 0.7763 6.2991 37 1 6.0051 0.9178 6.2884 38 1 3.8375 -2.4819 -0.0869 39 1 5.1895 -1.3247 0.0137 40 1 3.9333 -1.1898 -2.1672 41 1 3.9159 0.3388 -1.2541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871730826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:35 Heat of formation + Delta-G solvation = -101.593150 kcal Electronic energy + Delta-G solvation = -27596.876434 eV Core-core repulsion = 23340.011342 eV Total energy + Delta-G solvation = -4256.865092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.03598 -47.99606 -41.72332 -40.10660 -38.21891 -36.27121 -35.54349 -34.42161 -32.76135 -32.54585 -30.40933 -27.97879 -27.77100 -26.27331 -23.91304 -23.66319 -23.47161 -21.76158 -20.73399 -19.90984 -19.18080 -18.36333 -17.85125 -17.63845 -17.31405 -17.02849 -16.61423 -16.30369 -16.09684 -15.89215 -15.40953 -15.09430 -14.77086 -14.70266 -14.50693 -14.30517 -14.17240 -14.11977 -13.91581 -13.83785 -13.46564 -13.20037 -13.06566 -12.94464 -12.81406 -12.73126 -12.35166 -12.20221 -12.08912 -11.81245 -11.50281 -11.40772 -11.23519 -11.13562 -9.88024 -9.84852 -9.65962 -8.84679 -8.51699 -6.58571 0.81728 1.00129 1.39527 1.43628 1.56287 1.56974 2.18739 2.23676 2.66368 2.74249 2.87221 2.99343 3.24812 3.33216 3.60974 3.72892 3.97659 4.01912 4.13436 4.22997 4.31136 4.39404 4.53902 4.62033 4.66155 4.73535 4.81642 4.84208 4.88206 4.93267 5.00176 5.05272 5.19229 5.30087 5.39186 5.48940 5.62830 5.74120 6.01966 6.22466 6.54195 6.75687 6.84728 6.87111 7.50921 7.85917 8.35674 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.027102 B = 0.002614 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.881757 B =10708.538687 C =11348.808115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 H 0.100 0.900 4 C 0.137 3.863 5 N -0.629 5.629 6 C 0.696 3.304 7 O -0.575 6.575 8 N -0.657 5.657 9 C 0.360 3.640 10 C -0.301 4.301 11 C 0.119 3.881 12 C -0.487 4.487 13 H 0.087 0.913 14 C 0.031 3.969 15 N -0.831 5.831 16 Si 0.994 3.006 17 H -0.264 1.264 18 H -0.270 1.270 19 H -0.254 1.254 20 C -0.234 4.234 21 C 0.096 3.904 22 N -0.572 5.572 23 C 0.107 3.893 24 C -0.169 4.169 25 C 0.293 3.707 26 F -0.201 7.201 27 F -0.205 7.205 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.421 0.579 34 H 0.127 0.873 35 H 0.288 0.712 36 H 0.122 0.878 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.852 -5.449 -14.855 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 H 0.118 0.882 4 C 0.014 3.986 5 N -0.368 5.368 6 C 0.397 3.603 7 O -0.449 6.449 8 N -0.309 5.309 9 C 0.130 3.870 10 C -0.327 4.327 11 C 0.110 3.890 12 C -0.518 4.518 13 H 0.105 0.895 14 C -0.183 4.183 15 N -0.458 5.458 16 Si 0.815 3.185 17 H -0.189 1.189 18 H -0.195 1.195 19 H -0.178 1.178 20 C -0.257 4.257 21 C -0.054 4.054 22 N -0.291 5.291 23 C -0.015 4.015 24 C -0.208 4.208 25 C 0.256 3.744 26 F -0.182 7.182 27 F -0.186 7.186 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.262 0.738 34 H 0.145 0.855 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.144 0.856 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.187 -4.804 -14.030 19.194 hybrid contribution 1.653 0.046 -0.268 1.676 sum -10.533 -4.758 -14.298 18.385 Atomic orbital electron populations 1.21762 0.91250 1.03641 1.03879 1.22492 0.99506 1.01244 0.92711 0.88157 1.21514 0.77589 1.01616 0.97903 1.47419 1.06478 1.64935 1.17976 1.16096 0.81444 0.79690 0.83049 1.90989 1.72868 1.45405 1.35634 1.42566 1.05582 1.64683 1.18096 1.18018 0.87207 0.94645 0.87145 1.21486 0.91060 1.19280 1.00846 1.18028 0.94264 0.87004 0.89667 1.19819 0.90753 1.12260 1.29000 0.89469 1.26879 1.06380 0.93402 0.91687 1.69804 1.39937 1.13474 1.22613 0.85014 0.74923 0.79929 0.78671 1.18869 1.19507 1.17786 1.22145 0.94127 1.08926 1.00539 1.21925 0.91617 0.96752 0.95156 1.67286 1.40246 1.21066 1.00535 1.21861 0.99392 0.98398 0.81877 1.22945 0.91035 1.05443 1.01388 1.21125 0.94035 0.75525 0.83670 1.92983 1.91320 1.37078 1.96783 1.92993 1.89869 1.81979 1.53773 0.90306 0.91083 0.91225 0.89329 0.89507 0.73846 0.85484 0.90135 0.86028 0.84479 0.88523 0.87705 0.85601 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.95 71.98 0.64 -1.54 16 2 C -0.14 -2.46 2.53 -10.72 -0.03 -2.49 16 3 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.14 2.98 5.52 86.36 0.48 3.46 16 5 N -0.63 -15.44 2.98 -836.81 -2.49 -17.93 16 6 C 0.70 24.89 8.25 179.05 1.48 26.36 16 7 O -0.57 -26.44 14.05 -3.97 -0.06 -26.49 16 8 N -0.66 -23.17 5.30 -322.37 -1.71 -24.87 16 9 C 0.36 16.59 7.41 132.76 0.98 17.57 16 10 C -0.30 -14.05 9.74 23.00 0.22 -13.83 16 11 C 0.12 6.24 5.57 -21.12 -0.12 6.13 16 12 C -0.49 -24.79 9.10 23.52 0.21 -24.58 16 13 H 0.09 4.16 7.85 -2.91 -0.02 4.13 16 14 C 0.03 1.50 5.44 85.29 0.46 1.96 16 15 N -0.83 -42.32 10.66 21.84 0.23 -42.09 16 16 Si 0.99 36.35 29.56 68.60 2.03 38.37 16 17 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 18 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 19 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 20 C -0.23 -12.43 8.72 22.60 0.20 -12.23 16 21 C 0.10 4.92 11.10 84.27 0.94 5.85 16 22 N -0.57 -29.48 7.89 -194.28 -1.53 -31.01 16 23 C 0.11 1.69 6.18 86.36 0.53 2.22 16 24 C -0.17 -2.28 5.62 30.67 0.17 -2.10 16 25 C 0.29 4.93 1.63 30.62 0.05 4.98 16 26 F -0.20 -3.67 15.64 44.97 0.70 -2.97 16 27 F -0.21 -3.90 16.50 44.97 0.74 -3.16 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.01 7.78 -2.38 -0.02 0.99 16 30 H 0.07 0.98 7.83 -2.39 -0.02 0.96 16 31 H 0.09 2.34 7.00 -2.39 -0.02 2.33 16 32 H 0.09 1.67 7.92 -2.39 -0.02 1.66 16 33 H 0.42 10.86 6.19 -92.70 -0.57 10.28 16 34 H 0.13 5.11 8.06 -2.91 -0.02 5.09 16 35 H 0.29 13.29 8.29 -92.71 -0.77 12.52 16 36 H 0.12 6.67 6.22 -2.91 -0.02 6.65 16 37 H 0.14 6.33 8.06 -2.91 -0.02 6.31 16 38 H 0.10 1.29 7.92 -2.39 -0.02 1.27 16 39 H 0.10 1.37 5.66 -2.39 -0.01 1.36 16 40 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -69.77 341.01 4.65 -65.12 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.51 Total: 33.26 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 6.23 Total: 11.77 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -5.50 Total: -115.90 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.06 Total: -26.49 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 1.44 Total: -6.13 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.37 kcal Total: -69.77 4.65 -65.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.469 kcal (2) G-P(sol) polarization free energy of solvation -69.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds