Wall clock time and date at job start Tue Mar 31 2020 14:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 119.99766 * 2 1 4 4 H 1.48501 * 109.46976 * 239.99940 * 3 2 1 5 5 H 1.48504 * 109.47350 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47054 * 120.00183 * 3 2 1 7 7 C 1.40030 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99745 * 192.09065 * 7 2 1 9 9 C 1.41545 * 120.00237 * 12.09886 * 7 2 1 10 10 C 1.41158 * 120.99950 * 201.11493 * 9 7 2 11 11 C 1.36582 * 119.13120 * 180.02562 * 10 9 7 12 12 N 1.32070 * 121.25910 * 359.72518 * 11 10 9 13 13 C 1.32489 * 122.22555 * 0.57187 * 12 11 10 14 14 N 1.39461 * 119.64761 * 179.70807 * 13 12 11 15 15 C 1.34773 * 119.99851 * 6.00695 * 14 13 12 16 16 O 1.21575 * 120.00163 * 355.46285 * 15 14 13 17 17 N 1.34781 * 119.99763 * 175.46425 * 15 14 13 18 18 C 1.46503 * 119.99990 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47343 * 179.97438 * 18 17 15 20 20 H 1.09005 * 110.05412 * 53.58930 * 19 18 17 21 21 C 1.54264 * 110.03356 * 292.17369 * 19 18 17 22 22 C 1.54898 * 104.19285 * 217.10221 * 21 19 18 23 23 C 1.55016 * 102.75323 * 37.95400 * 22 21 19 24 24 C 1.53873 * 110.03447 * 174.99866 * 19 18 17 25 25 F 1.39899 * 110.03796 * 238.57453 * 24 19 18 26 26 F 1.39903 * 110.03198 * 359.95708 * 24 19 18 27 27 C 1.38641 * 120.70645 * 359.42873 * 13 12 11 28 28 H 0.96999 * 120.00402 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.43418 * 359.97438 * 10 9 7 30 30 H 1.08007 * 119.37418 * 180.02562 * 11 10 9 31 31 H 0.97001 * 119.99967 * 186.00319 * 14 13 12 32 32 H 0.97000 * 120.00393 * 359.97438 * 17 15 14 33 33 H 1.09004 * 109.46791 * 60.00136 * 18 17 15 34 34 H 1.08996 * 109.47400 * 300.00277 * 18 17 15 35 35 H 1.09001 * 110.48554 * 335.77712 * 21 19 18 36 36 H 1.08996 * 110.49074 * 98.29169 * 21 19 18 37 37 H 1.08998 * 110.75313 * 156.25358 * 22 21 19 38 38 H 1.09000 * 110.75762 * 279.44115 * 22 21 19 39 39 H 1.08998 * 110.52248 * 203.38725 * 23 22 21 40 40 H 1.08992 * 110.50618 * 80.70119 * 23 22 21 41 41 H 1.08004 * 120.66776 * 180.25162 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2763 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0696 -1.2231 0.1954 9 6 1.3234 -2.4248 -0.2580 10 6 1.8596 -3.6639 0.1540 11 6 1.1674 -4.8102 -0.1148 12 7 0.0077 -4.7785 -0.7460 13 6 -0.5403 -3.6458 -1.1606 14 7 -1.7647 -3.6753 -1.8275 15 6 -2.4424 -4.8348 -1.9410 16 8 -1.9493 -5.8693 -1.5353 17 7 -3.6667 -4.8473 -2.5043 18 6 -4.4032 -6.1077 -2.6283 19 6 -5.7543 -5.8454 -3.2966 20 1 -5.6090 -5.3164 -4.2386 21 6 -6.6557 -5.0163 -2.3586 22 6 -8.0751 -5.5922 -2.5890 23 6 -7.8062 -7.1101 -2.7517 24 6 -6.4858 -7.1758 -3.5467 25 9 -6.7549 -7.3257 -4.9114 26 9 -5.7055 -8.2445 -3.0923 27 6 0.0877 -2.4308 -0.9334 28 1 -0.4851 0.8400 0.0004 29 1 2.8052 -3.7050 0.6742 30 1 1.5738 -5.7605 0.1990 31 1 -2.1287 -2.8614 -2.2096 32 1 -4.0604 -4.0218 -2.8277 33 1 -4.5647 -6.5330 -1.6377 34 1 -3.8273 -6.8069 -3.2344 35 1 -6.3529 -5.1519 -1.3203 36 1 -6.6211 -3.9613 -2.6304 37 1 -8.7132 -5.4035 -1.7258 38 1 -8.5186 -5.1762 -3.4937 39 1 -8.6127 -7.5831 -3.3120 40 1 -7.6887 -7.5837 -1.7771 41 1 -0.3615 -1.5074 -1.2680 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871732849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:24 Heat of formation + Delta-G solvation = -99.268214 kcal Electronic energy + Delta-G solvation = -26935.161744 eV Core-core repulsion = 22678.397469 eV Total energy + Delta-G solvation = -4256.764275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.18852 -47.23612 -39.84531 -38.40192 -37.63845 -34.59969 -34.07428 -33.72016 -30.62140 -30.29250 -28.38059 -28.18712 -26.01440 -24.81492 -22.02417 -21.80856 -21.47316 -20.64479 -20.06476 -18.21285 -17.97091 -17.60889 -16.85971 -16.33402 -16.01588 -15.36035 -15.31563 -14.89484 -14.64018 -14.47294 -14.24456 -14.14450 -13.90299 -13.82234 -13.54219 -13.29522 -12.91357 -12.83014 -12.59479 -12.29927 -12.24801 -11.85494 -11.71574 -11.44752 -11.31571 -11.18178 -11.13609 -10.99150 -10.88683 -10.30121 -10.10582 -9.76311 -9.57806 -9.38339 -8.83748 -7.97392 -7.71036 -6.98507 -6.75045 -4.62864 2.71713 2.82318 2.87292 2.99349 3.02614 3.26930 3.47458 3.59088 3.81239 3.83389 3.88309 3.96188 4.52960 4.60052 4.63799 4.70671 4.74784 4.88332 4.95136 4.99158 5.26923 5.46171 5.49715 5.54747 5.69641 5.73684 5.74999 5.84404 5.99704 6.55862 6.61740 6.66513 6.82838 6.94136 7.17792 7.28428 7.45949 7.51331 7.88816 8.12157 8.39459 8.48172 8.74555 8.76492 9.19243 9.76580 10.06196 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.022288 B = 0.002467 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.956715 B =11347.760543 C =12248.740223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.449 4.449 8 H 0.081 0.919 9 C 0.140 3.860 10 C -0.285 4.285 11 C 0.119 3.881 12 N -0.554 5.554 13 C 0.353 3.647 14 N -0.667 5.667 15 C 0.691 3.309 16 O -0.530 6.530 17 N -0.754 5.754 18 C 0.153 3.847 19 C -0.145 4.145 20 H 0.107 0.893 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.162 4.162 24 C 0.290 3.710 25 F -0.197 7.197 26 F -0.192 7.192 27 C -0.250 4.250 28 H 0.281 0.719 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.404 0.596 32 H 0.391 0.609 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.083 -4.206 -6.521 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.480 4.480 8 H 0.099 0.901 9 C 0.131 3.869 10 C -0.309 4.309 11 C -0.034 4.034 12 N -0.273 5.273 13 C 0.127 3.873 14 N -0.315 5.315 15 C 0.391 3.609 16 O -0.401 6.401 17 N -0.412 5.412 18 C 0.028 3.972 19 C -0.165 4.165 20 H 0.125 0.875 21 C -0.157 4.157 22 C -0.160 4.160 23 C -0.200 4.200 24 C 0.253 3.747 25 F -0.178 7.178 26 F -0.173 7.173 27 C -0.276 4.276 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.139 0.861 31 H 0.238 0.762 32 H 0.224 0.776 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.290 -5.908 -6.312 19.331 hybrid contribution 0.458 2.235 -0.305 2.302 sum -16.832 -3.673 -6.617 18.455 Atomic orbital electron populations 1.69730 1.07611 1.29165 1.35215 1.25977 0.94862 1.01532 0.91984 0.86253 0.80012 0.79722 0.80078 1.18760 1.20264 1.18890 1.19583 0.96370 0.90221 1.41873 0.90095 1.17578 0.90508 0.92250 0.86559 1.21644 1.03594 0.94079 1.11603 1.21465 0.90302 0.96695 0.94985 1.67203 1.13265 1.27519 1.19335 1.17993 0.85014 0.90808 0.93469 1.42528 1.20639 1.09882 1.58415 1.16051 0.80436 0.84759 0.79689 1.91026 1.67436 1.30503 1.51124 1.45096 1.18083 1.10313 1.67754 1.21012 0.89015 0.86061 1.01115 1.23027 0.96244 0.94684 1.02518 0.87482 1.22496 0.93504 0.99692 1.00043 1.22502 0.97358 0.93046 1.03102 1.23400 0.95003 0.99633 1.01922 1.21702 0.91296 0.85016 0.76714 1.93023 1.94462 1.96341 1.34017 1.93039 1.76686 1.59052 1.88552 1.21775 1.00722 0.95578 1.09509 0.90793 0.88101 0.86077 0.76215 0.77601 0.90826 0.91000 0.89816 0.89896 0.89800 0.90433 0.88864 0.88109 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.15 10.50 55.55 0.58 -18.57 16 2 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 3 Si 0.92 17.75 29.58 -169.99 -5.03 12.72 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.45 -11.50 9.15 -37.65 -0.34 -11.85 16 8 H 0.08 1.98 7.88 -52.48 -0.41 1.56 16 9 C 0.14 3.68 5.65 -106.55 -0.60 3.08 16 10 C -0.29 -7.08 9.85 -39.07 -0.38 -7.47 16 11 C 0.12 2.93 11.10 -18.05 -0.20 2.73 16 12 N -0.55 -14.53 7.86 -12.76 -0.10 -14.63 16 13 C 0.35 8.69 7.42 -154.68 -1.15 7.55 16 14 N -0.67 -13.21 5.39 -15.86 -0.09 -13.30 16 15 C 0.69 13.47 8.52 -86.92 -0.74 12.73 16 16 O -0.53 -12.87 14.60 5.30 0.08 -12.79 16 17 N -0.75 -10.14 5.41 -65.23 -0.35 -10.50 16 18 C 0.15 1.89 4.08 -4.04 -0.02 1.88 16 19 C -0.15 -1.26 2.81 -89.50 -0.25 -1.51 16 20 H 0.11 0.84 8.02 -51.93 -0.42 0.43 16 21 C -0.12 -0.80 6.08 -25.07 -0.15 -0.95 16 22 C -0.12 -0.66 6.91 -24.67 -0.17 -0.83 16 23 C -0.16 -1.07 6.41 -25.00 -0.16 -1.23 16 24 C 0.29 2.73 2.53 -25.61 -0.06 2.66 16 25 F -0.20 -2.11 17.04 2.25 0.04 -2.07 16 26 F -0.19 -2.30 15.45 2.25 0.03 -2.26 16 27 C -0.25 -6.36 8.67 -38.46 -0.33 -6.69 16 28 H 0.28 6.15 8.29 -40.82 -0.34 5.81 16 29 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 30 H 0.12 2.62 8.06 -52.48 -0.42 2.20 16 31 H 0.40 6.43 8.72 -40.82 -0.36 6.08 16 32 H 0.39 3.90 8.37 -40.82 -0.34 3.56 16 33 H 0.07 1.00 7.97 -51.93 -0.41 0.58 16 34 H 0.07 1.03 7.75 -51.93 -0.40 0.63 16 35 H 0.08 0.63 7.76 -51.93 -0.40 0.23 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.53 8.11 -51.93 -0.42 0.11 16 40 H 0.10 0.63 8.12 -51.93 -0.42 0.20 16 41 H 0.14 3.48 5.81 -52.48 -0.30 3.17 16 LS Contribution 348.99 15.07 5.26 5.26 Total: -1.00 -32.81 348.99 -9.38 -42.19 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -5.14 Total: 12.15 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -4.66 Total: 1.79 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.04 Total: -56.99 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.07 Total: -4.33 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.81 -9.38 -42.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.080 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds