Wall clock time and date at job start Tue Mar 31 2020 13:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81392 * 107.16792 * 2 1 4 4 O 1.42102 * 113.54200 * 233.80133 * 2 1 3 5 5 N 1.49359 * 107.51946 * 115.34034 * 2 1 3 6 6 C 1.32374 * 119.99916 * 64.89521 * 5 2 1 7 7 C 1.41815 * 120.66653 * 0.02562 * 6 5 2 8 8 C 1.36031 * 119.79889 * 180.02562 * 7 6 5 9 9 C 1.39079 * 121.28390 * 359.97438 * 8 7 6 10 10 C 1.38169 * 121.41065 * 0.02562 * 9 8 7 11 11 C 1.38656 * 120.07178 * 359.97438 * 10 9 8 12 12 N 1.38727 * 120.62197 * 179.97438 * 11 10 9 13 13 C 1.34783 * 119.99774 * 24.72527 * 12 11 10 14 14 O 1.21577 * 119.99871 * 5.65055 * 13 12 11 15 15 N 1.34774 * 120.00107 * 185.65011 * 13 12 11 16 16 C 1.46498 * 120.00021 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47289 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47495 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99955 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00258 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99930 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99822 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46774 * 90.00338 * 22 20 18 24 24 H 1.48494 * 109.46866 * 210.00063 * 22 20 18 25 25 H 1.48494 * 109.47164 * 330.00411 * 22 20 18 26 26 H 1.08997 * 109.47197 * 306.19969 * 1 2 3 27 27 H 1.09004 * 109.47188 * 66.20201 * 1 2 3 28 28 H 1.08995 * 109.47564 * 186.19766 * 1 2 3 29 29 H 1.08998 * 109.47434 * 175.33867 * 3 2 1 30 30 H 1.09003 * 109.47054 * 295.33782 * 3 2 1 31 31 H 1.09002 * 109.47541 * 55.33865 * 3 2 1 32 32 H 1.08001 * 120.09796 * 359.97249 * 7 6 5 33 33 H 1.07999 * 119.35828 * 180.02562 * 8 7 6 34 34 H 1.08004 * 119.29156 * 180.02562 * 9 8 7 35 35 H 1.07999 * 119.96499 * 179.72713 * 10 9 8 36 36 H 0.96992 * 120.00390 * 204.72973 * 12 11 10 37 37 H 0.97002 * 119.99604 * 359.97438 * 15 13 12 38 38 H 1.09005 * 109.46874 * 299.99689 * 16 15 13 39 39 H 1.08996 * 109.47315 * 59.99456 * 16 15 13 40 40 H 1.08997 * 109.47183 * 299.99978 * 17 16 15 41 41 H 1.09010 * 109.47181 * 59.99389 * 17 16 15 42 42 H 0.97001 * 120.00007 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3494 1.7331 0.0000 4 8 2.3816 -0.7694 -1.0513 5 7 2.2636 -0.6096 1.2873 6 6 1.9990 -1.8806 1.5457 7 6 1.2901 -2.6766 0.6103 8 6 1.0273 -3.9807 0.8942 9 6 1.4414 -4.5570 2.0903 10 6 2.1353 -3.8293 3.0380 11 6 2.4340 -2.4951 2.8078 12 7 3.1296 -1.7536 3.7517 13 6 3.9385 -2.3740 4.6333 14 8 4.1391 -3.5693 4.5374 15 7 4.5250 -1.6694 5.6212 16 6 5.4047 -2.3437 6.5791 17 6 5.9363 -1.3242 7.5886 18 6 6.8407 -2.0179 8.5744 19 1 7.0183 -3.0798 8.4897 20 6 7.4407 -1.2970 9.5851 21 7 8.2304 -1.9023 10.4450 22 14 7.1330 0.5396 9.7320 23 1 5.9528 0.7756 10.6019 24 1 8.3253 1.1951 10.3267 25 1 6.8762 1.1078 8.3843 26 1 -0.3633 0.6069 0.8293 27 1 -0.3634 0.4147 -0.9403 28 1 -0.3634 -1.0216 0.1109 29 1 3.4352 1.7780 0.0835 30 1 2.0364 2.2101 -0.9288 31 1 1.8982 2.2528 0.8453 32 1 0.9592 -2.2484 -0.3244 33 1 0.4873 -4.5805 0.1765 34 1 1.2158 -5.5956 2.2825 35 1 2.4418 -4.2992 3.9609 36 1 3.0337 -0.7887 3.7772 37 1 4.3653 -0.7157 5.6974 38 1 4.8448 -3.1175 7.1043 39 1 6.2408 -2.7978 6.0474 40 1 6.4963 -0.5507 7.0631 41 1 5.1004 -0.8696 8.1204 42 1 8.6522 -1.3953 11.1563 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879809144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:04 Heat of formation + Delta-G solvation = 22.884153 kcal Electronic energy + Delta-G solvation = -24767.734437 eV Core-core repulsion = 21070.107473 eV Total energy + Delta-G solvation = -3697.626964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.28645 -38.69907 -36.89484 -35.35944 -34.92977 -34.30066 -32.76185 -30.63309 -30.54965 -29.92416 -29.12415 -27.78445 -24.84226 -23.01504 -22.15222 -20.73568 -20.40620 -19.06950 -18.10756 -17.59020 -17.32268 -16.78288 -16.40661 -16.06949 -15.41365 -14.91976 -14.60871 -14.44232 -14.19753 -14.12122 -13.97872 -13.84329 -13.68864 -13.66254 -13.44833 -13.21564 -12.86930 -12.57728 -12.48114 -11.89717 -11.67163 -11.45266 -11.29922 -11.18694 -10.80871 -10.43906 -10.22782 -10.18152 -10.01005 -9.90766 -9.48835 -9.27921 -8.61828 -8.51758 -8.20299 -6.95947 -6.08203 -4.07973 -1.11545 1.44693 1.62661 2.05820 2.63805 3.02172 3.26839 3.33070 3.34160 3.35740 3.50312 3.95274 4.03625 4.18034 4.28675 4.39380 4.40000 4.57802 4.79221 4.82515 5.03730 5.21673 5.24723 5.39657 5.55177 5.69456 5.95254 6.10383 6.26230 6.28638 6.44556 6.61728 6.73500 6.79255 6.91556 6.94808 7.14467 7.27996 7.35544 7.48864 7.70378 8.31894 8.48878 8.91675 8.97195 9.51892 11.04927 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.002641 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.757822 B =10601.032515 C =11897.999552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.664 4.664 2 S 2.264 3.736 3 C -0.531 4.531 4 O -0.928 6.928 5 N -1.062 6.062 6 C 0.194 3.806 7 C -0.236 4.236 8 C -0.098 4.098 9 C -0.147 4.147 10 C -0.101 4.101 11 C 0.157 3.843 12 N -0.665 5.665 13 C 0.695 3.305 14 O -0.577 6.577 15 N -0.737 5.737 16 C 0.148 3.852 17 C -0.022 4.022 18 C -0.521 4.521 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.883 3.117 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.266 1.266 26 H 0.129 0.871 27 H 0.116 0.884 28 H 0.135 0.865 29 H 0.147 0.853 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.408 0.592 37 H 0.393 0.607 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.022 0.978 41 H 0.017 0.983 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.472 10.807 -24.695 33.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.816 4.816 2 S 2.459 3.541 3 C -0.690 4.690 4 O -0.913 6.913 5 N -0.945 5.945 6 C 0.082 3.918 7 C -0.262 4.262 8 C -0.118 4.118 9 C -0.168 4.168 10 C -0.122 4.122 11 C 0.052 3.948 12 N -0.309 5.309 13 C 0.395 3.605 14 O -0.455 6.455 15 N -0.391 5.391 16 C 0.025 3.975 17 C -0.059 4.059 18 C -0.560 4.560 19 H 0.095 0.905 20 C -0.133 4.133 21 N -0.537 5.537 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.147 0.853 27 H 0.135 0.865 28 H 0.153 0.847 29 H 0.165 0.835 30 H 0.154 0.846 31 H 0.163 0.837 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.168 0.832 36 H 0.244 0.756 37 H 0.226 0.774 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.407 9.766 -24.799 32.970 hybrid contribution -0.864 1.968 -0.076 2.150 sum -20.271 11.734 -24.875 34.166 Atomic orbital electron populations 1.30503 1.28200 1.12452 1.10435 1.14944 0.80707 0.81535 0.76882 1.28829 1.13942 1.14025 1.12186 1.93607 1.73662 1.62597 1.61438 1.69560 1.53348 1.24472 1.47086 1.18021 0.97053 0.85341 0.91434 1.21470 1.08823 0.97239 0.98678 1.20249 1.00247 0.94168 0.97103 1.20933 1.01550 0.99861 0.94506 1.21353 0.97251 0.92430 1.01210 1.18357 0.98367 0.91744 0.86315 1.42015 1.45870 1.10690 1.32320 1.16057 0.78881 0.85607 0.79915 1.90866 1.66011 1.13158 1.75458 1.45531 1.51168 1.11843 1.30515 1.21415 0.91527 0.95985 0.88571 1.19798 0.96462 0.95298 0.94384 1.20924 1.27087 0.97213 1.10742 0.90540 1.25001 0.94592 0.98429 0.95303 1.69904 1.31021 1.36331 1.16473 0.86742 0.77840 0.85823 0.78604 1.20259 1.21338 1.19102 0.85251 0.86474 0.84652 0.83509 0.84576 0.83671 0.86605 0.86856 0.86434 0.83219 0.75616 0.77449 0.91940 0.91986 0.96021 0.96432 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.98 10.23 101.05 1.03 -0.94 16 2 S 2.26 12.60 4.30 -107.50 -0.46 12.13 16 3 C -0.53 -0.26 10.89 101.05 1.10 0.84 16 4 O -0.93 -10.10 16.18 -35.23 -0.57 -10.67 16 5 N -1.06 -10.61 9.76 33.07 0.32 -10.29 16 6 C 0.19 2.60 6.54 -82.74 -0.54 2.06 16 7 C -0.24 -2.95 7.50 -39.01 -0.29 -3.24 16 8 C -0.10 -1.21 9.92 -40.06 -0.40 -1.61 16 9 C -0.15 -2.01 10.00 -39.29 -0.39 -2.40 16 10 C -0.10 -1.62 8.71 -39.45 -0.34 -1.96 16 11 C 0.16 2.46 6.68 -81.06 -0.54 1.91 16 12 N -0.66 -9.98 5.28 -12.45 -0.07 -10.05 16 13 C 0.69 12.63 8.37 -86.91 -0.73 11.90 16 14 O -0.58 -12.51 13.52 5.30 0.07 -12.44 16 15 N -0.74 -12.75 5.56 -65.23 -0.36 -13.11 16 16 C 0.15 3.09 5.61 -4.04 -0.02 3.07 16 17 C -0.02 -0.50 4.16 -27.89 -0.12 -0.61 16 18 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 19 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 22 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 26 H 0.13 0.15 8.14 -51.93 -0.42 -0.28 16 27 H 0.12 0.07 8.14 -51.92 -0.42 -0.36 16 28 H 0.14 0.65 5.92 -51.93 -0.31 0.34 16 29 H 0.15 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.14 -0.31 8.14 -51.92 -0.42 -0.73 16 31 H 0.14 -0.25 8.14 -51.92 -0.42 -0.67 16 32 H 0.12 1.20 4.67 -52.49 -0.24 0.95 16 33 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 35 H 0.15 2.67 5.82 -52.49 -0.31 2.36 16 36 H 0.41 4.92 8.49 -40.82 -0.35 4.57 16 37 H 0.39 5.57 8.49 -40.82 -0.35 5.23 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 41 H 0.02 0.39 7.57 -51.92 -0.39 -0.01 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 358.08 15.07 5.40 5.40 Total: -1.00 -40.81 358.08 -6.94 -47.76 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.71 Total: 5.77 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.67 Total: -4.15 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.67 Total: -60.19 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.50 Total: -23.11 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 16 Polarization: 12.60 SS G_CDS: -0.46 Total: 12.13 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -40.81 -6.94 -47.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879809144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.643 kcal (2) G-P(sol) polarization free energy of solvation -40.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds