Wall clock time and date at job start Tue Mar 31 2020 14:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 115.55368 * 2 1 4 4 C 1.53001 * 109.46776 * 34.41537 * 3 2 1 5 5 N 1.46500 * 109.46559 * 179.97438 * 4 3 2 6 6 C 1.34782 * 120.00105 * 179.97438 * 5 4 3 7 7 O 1.21581 * 119.99240 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00279 * 179.72782 * 6 5 4 9 9 C 1.39244 * 119.99787 * 175.12933 * 8 6 5 10 10 C 1.39688 * 119.57356 * 185.33502 * 9 8 6 11 11 C 1.38641 * 119.49672 * 179.97438 * 10 9 8 12 12 C 1.38357 * 118.67143 * 0.02562 * 11 10 9 13 13 C 1.40571 * 119.12987 * 359.97438 * 12 11 10 14 14 C 1.41330 * 119.78734 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00094 * 0.02562 * 14 13 12 16 16 C 1.40034 * 120.00092 * 179.97438 * 14 13 12 17 17 N 1.30737 * 119.99920 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99834 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46952 * 60.00579 * 18 16 14 20 20 H 1.48507 * 109.46883 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47190 * 300.00221 * 18 16 14 22 22 N 1.31906 * 119.57902 * 5.05471 * 9 8 6 23 23 C 1.53008 * 117.49672 * 145.67125 * 2 1 3 24 24 C 1.53004 * 117.49505 * 214.32633 * 2 1 3 25 25 F 1.39892 * 117.50014 * 359.97438 * 24 2 1 26 26 F 1.39905 * 117.49429 * 144.97434 * 24 2 1 27 27 H 1.08994 * 109.47447 * 85.58019 * 1 2 3 28 28 H 1.08997 * 109.47345 * 205.58660 * 1 2 3 29 29 H 1.09009 * 109.46544 * 325.58362 * 1 2 3 30 30 H 1.08997 * 109.46602 * 274.42016 * 3 2 1 31 31 H 1.08997 * 109.47022 * 154.41661 * 3 2 1 32 32 H 1.08997 * 109.47164 * 60.00822 * 4 3 2 33 33 H 1.08997 * 109.47446 * 299.99864 * 4 3 2 34 34 H 0.96999 * 120.00568 * 0.02562 * 5 4 3 35 35 H 0.97001 * 119.99738 * 355.12282 * 8 6 5 36 36 H 1.08002 * 120.25086 * 359.94617 * 10 9 8 37 37 H 1.07996 * 120.66791 * 179.97438 * 11 10 9 38 38 H 1.08004 * 120.43531 * 179.97438 * 12 11 10 39 39 H 0.97000 * 119.99890 * 179.97438 * 17 16 14 40 40 H 1.09001 * 117.49591 * 215.00003 * 23 2 1 41 41 H 1.09004 * 117.49643 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 1.3363 2.3537 0.8153 5 7 1.9686 3.6752 0.8158 6 6 1.3904 4.6987 1.4751 7 8 0.3443 4.5250 2.0699 8 7 1.9748 5.9131 1.4802 9 6 1.3289 6.9942 2.0743 10 6 1.8890 8.2702 1.9773 11 6 1.2442 9.3455 2.5690 12 6 0.0571 9.1189 3.2427 13 6 -0.4554 7.8114 3.3051 14 6 -1.6672 7.5643 3.9892 15 1 -2.1965 8.3786 4.4615 16 6 -2.1821 6.2636 4.0537 17 7 -1.5422 5.2781 3.4806 18 14 -3.7834 5.9369 4.9585 19 1 -4.8754 6.7244 4.3321 20 1 -4.1096 4.4902 4.8806 21 1 -3.6383 6.3363 6.3813 22 7 0.1931 6.8011 2.7167 23 6 2.2364 -1.1208 0.7654 24 6 2.2364 -1.1208 -0.7653 25 9 1.4339 -2.0675 -1.4110 26 9 3.4360 -0.8049 -1.4121 27 1 -0.3634 0.0792 -1.0245 28 1 -0.3634 -0.9268 0.4438 29 1 -0.3633 0.8479 0.5809 30 1 2.2752 1.7422 -1.0246 31 1 3.1829 1.3083 0.4438 32 1 1.2511 1.9919 1.8399 33 1 0.3434 2.4258 0.3715 34 1 2.8030 3.8139 0.3410 35 1 2.8455 6.0340 1.0700 36 1 2.8175 8.4179 1.4458 37 1 1.6605 10.3400 2.5060 38 1 -0.4688 9.9358 3.7145 39 1 -1.8987 4.3771 3.5256 40 1 3.1713 -0.8747 1.2689 41 1 1.6111 -1.8584 1.2686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881141944.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:38 Heat of formation + Delta-G solvation = -37.484113 kcal Electronic energy + Delta-G solvation = -27059.454591 eV Core-core repulsion = 22805.369476 eV Total energy + Delta-G solvation = -4254.085115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.90537 -47.58061 -39.52238 -38.36500 -37.53710 -34.57864 -33.84777 -32.95820 -30.55290 -30.20195 -28.85116 -28.11495 -25.51945 -23.88293 -22.82820 -21.84253 -21.13370 -20.03266 -19.55652 -18.10393 -17.80985 -17.02396 -16.76026 -16.30767 -16.02965 -15.51221 -14.92387 -14.55515 -14.39988 -14.27544 -14.25553 -14.06637 -13.79667 -13.64773 -13.46990 -13.24041 -13.04449 -12.78145 -12.42655 -12.19147 -11.98166 -11.88169 -11.67140 -11.48329 -11.10763 -10.94245 -10.63281 -10.61299 -10.43247 -9.96240 -9.92042 -9.66200 -9.11541 -8.99405 -8.47493 -7.92399 -7.18567 -6.91532 -6.08185 -4.36208 2.68440 2.78587 2.87658 3.15846 3.17994 3.20352 3.22719 3.30327 3.86526 3.99037 4.09232 4.23564 4.32159 4.47918 4.84310 4.97010 5.00527 5.03800 5.15484 5.22896 5.41928 5.43372 5.51157 5.66445 5.84163 5.99339 6.06135 6.08404 6.13630 6.50464 6.63494 6.82338 6.87826 6.96639 7.26370 7.38139 7.64857 7.76619 7.84545 8.20001 8.32348 8.68143 8.82954 9.09166 9.60963 10.30025 10.52753 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.003015 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.178344 B = 9283.731683 C =11007.154764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.109 4.109 3 C -0.098 4.098 4 C 0.147 3.853 5 N -0.762 5.762 6 C 0.663 3.337 7 O -0.462 6.462 8 N -0.673 5.673 9 C 0.387 3.613 10 C -0.359 4.359 11 C -0.036 4.036 12 C -0.307 4.307 13 C 0.271 3.729 14 C -0.426 4.426 15 H 0.081 0.919 16 C 0.057 3.943 17 N -0.649 5.649 18 Si 0.894 3.106 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.267 1.267 22 N -0.472 5.472 23 C -0.169 4.169 24 C 0.192 3.808 25 F -0.161 7.161 26 F -0.162 7.162 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.384 0.616 35 H 0.395 0.605 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.272 0.728 40 H 0.123 0.877 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.812 -12.886 -7.051 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.110 4.110 3 C -0.135 4.135 4 C 0.023 3.977 5 N -0.423 5.423 6 C 0.361 3.639 7 O -0.326 6.326 8 N -0.322 5.322 9 C 0.147 3.853 10 C -0.385 4.385 11 C -0.060 4.060 12 C -0.330 4.330 13 C 0.146 3.854 14 C -0.456 4.456 15 H 0.099 0.901 16 C -0.172 4.172 17 N -0.267 5.267 18 Si 0.719 3.281 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.192 1.192 22 N -0.190 5.190 23 C -0.207 4.207 24 C 0.155 3.845 25 F -0.142 7.142 26 F -0.142 7.142 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.216 0.784 35 H 0.227 0.773 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.368 -14.214 -6.499 16.877 hybrid contribution 0.819 0.626 -0.447 1.123 sum 7.187 -13.589 -6.945 16.868 Atomic orbital electron populations 1.21585 0.89563 1.04097 1.03608 1.22796 0.97398 0.91731 0.99119 1.21335 0.99108 0.91135 1.01958 1.21053 0.95878 0.80776 1.00025 1.45277 1.28256 1.09717 1.59006 1.16423 0.85267 0.80360 0.81820 1.91390 1.19243 1.80316 1.41627 1.42553 1.21813 1.07458 1.60350 1.18340 0.91577 0.83562 0.91807 1.20436 1.05701 0.92727 1.19601 1.20543 0.94376 0.96160 0.94937 1.21619 1.00620 0.98175 1.12632 1.18383 0.91966 0.86077 0.88962 1.19538 1.03857 0.94010 1.28216 0.90060 1.26184 0.98355 0.96697 0.96009 1.70341 1.32085 0.99807 1.24501 0.86613 0.82879 0.77899 0.80735 1.19227 1.20443 1.19224 1.68692 1.05689 1.31812 1.12826 1.24634 1.04398 1.00971 0.90655 1.20282 0.81052 0.94407 0.88770 1.93009 1.72279 1.65265 1.83609 1.93013 1.44948 1.92685 1.83564 0.91097 0.91483 0.89198 0.90062 0.90329 0.91572 0.91199 0.78391 0.77254 0.89186 0.88652 0.88615 0.91644 0.85925 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 9.13 37.16 0.34 -0.81 16 2 C -0.11 -0.94 2.46 -154.50 -0.38 -1.32 16 3 C -0.10 -0.87 5.16 -26.73 -0.14 -1.00 16 4 C 0.15 1.81 4.68 -4.04 -0.02 1.79 16 5 N -0.76 -10.67 5.56 -65.23 -0.36 -11.04 16 6 C 0.66 13.34 8.52 -86.92 -0.74 12.60 16 7 O -0.46 -11.61 12.10 5.29 0.06 -11.55 16 8 N -0.67 -13.25 5.39 -15.78 -0.09 -13.33 16 9 C 0.39 9.49 7.43 -154.99 -1.15 8.34 16 10 C -0.36 -8.08 9.95 -38.89 -0.39 -8.47 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.31 -7.80 9.83 -38.66 -0.38 -8.18 16 13 C 0.27 7.68 6.55 -85.00 -0.56 7.12 16 14 C -0.43 -11.78 9.14 -37.73 -0.34 -12.12 16 15 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 16 C 0.06 1.51 5.50 -17.34 -0.10 1.41 16 17 N -0.65 -18.00 8.98 55.55 0.50 -17.50 16 18 Si 0.89 19.25 29.56 -169.99 -5.02 14.22 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 N -0.47 -13.33 5.74 -10.26 -0.06 -13.39 16 23 C -0.17 -1.23 9.80 -26.69 -0.26 -1.50 16 24 C 0.19 1.82 5.14 -26.69 -0.14 1.68 16 25 F -0.16 -1.73 17.14 2.25 0.04 -1.69 16 26 F -0.16 -1.71 17.15 2.25 0.04 -1.68 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.52 7.90 -51.93 -0.41 0.11 16 29 H 0.09 0.87 5.59 -51.92 -0.29 0.58 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.62 7.90 -51.93 -0.41 0.21 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.95 6.45 -51.93 -0.33 0.61 16 34 H 0.38 4.06 8.49 -40.82 -0.35 3.71 16 35 H 0.39 5.91 8.71 -40.82 -0.36 5.56 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 39 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 40 H 0.12 0.75 8.05 -51.93 -0.42 0.33 16 41 H 0.12 0.74 8.05 -51.93 -0.42 0.32 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -33.71 352.26 -9.30 -43.01 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.07 Total: 9.32 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -4.65 Total: -1.69 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.01 Total: -55.26 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.06 Total: -11.55 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.08 Total: -3.37 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.71 -9.30 -43.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881141944.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.525 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds