Wall clock time and date at job start Tue Mar 31 2020 14:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 115.55368 * 2 1 4 4 C 1.53001 * 109.46776 * 34.41537 * 3 2 1 5 5 N 1.46500 * 109.46559 * 179.97438 * 4 3 2 6 6 C 1.34782 * 120.00105 * 179.97438 * 5 4 3 7 7 O 1.21581 * 119.99240 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00279 * 179.72782 * 6 5 4 9 9 C 1.39244 * 119.99787 * 175.12933 * 8 6 5 10 10 C 1.39688 * 119.57356 * 185.33502 * 9 8 6 11 11 C 1.38641 * 119.49672 * 179.97438 * 10 9 8 12 12 C 1.38357 * 118.67143 * 0.02562 * 11 10 9 13 13 C 1.40571 * 119.12987 * 359.97438 * 12 11 10 14 14 C 1.41330 * 119.78734 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00094 * 0.02562 * 14 13 12 16 16 C 1.40034 * 120.00092 * 179.97438 * 14 13 12 17 17 N 1.30737 * 119.99920 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99834 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46952 * 60.00579 * 18 16 14 20 20 H 1.48507 * 109.46883 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47190 * 300.00221 * 18 16 14 22 22 N 1.31906 * 119.57902 * 5.05471 * 9 8 6 23 23 C 1.53008 * 117.49672 * 145.67125 * 2 1 3 24 24 C 1.53004 * 117.49505 * 214.32633 * 2 1 3 25 25 F 1.39892 * 117.50014 * 359.97438 * 24 2 1 26 26 F 1.39905 * 117.49429 * 144.97434 * 24 2 1 27 27 H 1.08994 * 109.47447 * 85.58019 * 1 2 3 28 28 H 1.08997 * 109.47345 * 205.58660 * 1 2 3 29 29 H 1.09009 * 109.46544 * 325.58362 * 1 2 3 30 30 H 1.08997 * 109.46602 * 274.42016 * 3 2 1 31 31 H 1.08997 * 109.47022 * 154.41661 * 3 2 1 32 32 H 1.08997 * 109.47164 * 60.00822 * 4 3 2 33 33 H 1.08997 * 109.47446 * 299.99864 * 4 3 2 34 34 H 0.96999 * 120.00568 * 0.02562 * 5 4 3 35 35 H 0.97001 * 119.99738 * 355.12282 * 8 6 5 36 36 H 1.08002 * 120.25086 * 359.94617 * 10 9 8 37 37 H 1.07996 * 120.66791 * 179.97438 * 11 10 9 38 38 H 1.08004 * 120.43531 * 179.97438 * 12 11 10 39 39 H 0.97000 * 119.99890 * 179.97438 * 17 16 14 40 40 H 1.09001 * 117.49591 * 215.00003 * 23 2 1 41 41 H 1.09004 * 117.49643 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 1.3363 2.3537 0.8153 5 7 1.9686 3.6752 0.8158 6 6 1.3904 4.6987 1.4751 7 8 0.3443 4.5250 2.0699 8 7 1.9748 5.9131 1.4802 9 6 1.3289 6.9942 2.0743 10 6 1.8890 8.2702 1.9773 11 6 1.2442 9.3455 2.5690 12 6 0.0571 9.1189 3.2427 13 6 -0.4554 7.8114 3.3051 14 6 -1.6672 7.5643 3.9892 15 1 -2.1965 8.3786 4.4615 16 6 -2.1821 6.2636 4.0537 17 7 -1.5422 5.2781 3.4806 18 14 -3.7834 5.9369 4.9585 19 1 -4.8754 6.7244 4.3321 20 1 -4.1096 4.4902 4.8806 21 1 -3.6383 6.3363 6.3813 22 7 0.1931 6.8011 2.7167 23 6 2.2364 -1.1208 0.7654 24 6 2.2364 -1.1208 -0.7653 25 9 1.4339 -2.0675 -1.4110 26 9 3.4360 -0.8049 -1.4121 27 1 -0.3634 0.0792 -1.0245 28 1 -0.3634 -0.9268 0.4438 29 1 -0.3633 0.8479 0.5809 30 1 2.2752 1.7422 -1.0246 31 1 3.1829 1.3083 0.4438 32 1 1.2511 1.9919 1.8399 33 1 0.3434 2.4258 0.3715 34 1 2.8030 3.8139 0.3410 35 1 2.8455 6.0340 1.0700 36 1 2.8175 8.4179 1.4458 37 1 1.6605 10.3400 2.5060 38 1 -0.4688 9.9358 3.7145 39 1 -1.8987 4.3771 3.5256 40 1 3.1713 -0.8747 1.2689 41 1 1.6111 -1.8584 1.2686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881141944.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:37 Heat of formation + Delta-G solvation = -58.282261 kcal Electronic energy + Delta-G solvation = -27060.356467 eV Core-core repulsion = 22805.369476 eV Total energy + Delta-G solvation = -4254.986991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.66068 -48.34879 -41.10055 -39.63799 -38.83814 -36.05266 -35.43510 -34.79241 -32.19807 -31.65331 -30.39139 -28.99052 -27.40863 -25.00842 -23.66849 -23.40125 -22.92113 -21.45710 -20.50952 -19.72877 -18.82814 -18.43408 -18.05765 -17.42641 -16.98547 -16.62628 -16.50825 -16.23289 -15.79940 -15.59538 -15.49606 -15.04153 -14.87095 -14.71542 -14.60956 -14.51807 -14.39339 -14.02021 -13.81209 -13.65054 -13.11472 -12.86386 -12.82553 -12.70104 -12.53692 -12.51839 -12.32955 -12.28196 -11.75836 -11.47727 -11.30413 -10.84910 -10.82689 -10.65906 -9.88396 -9.77856 -9.07763 -8.74708 -7.98781 -6.37730 1.00551 1.31631 1.41775 1.53005 1.56444 1.77717 2.05432 2.13754 2.29647 2.60838 3.07609 3.17456 3.24434 3.51085 3.60804 3.82022 4.10432 4.15558 4.24977 4.38889 4.43908 4.62639 4.65024 4.74380 4.77148 4.85180 4.87919 4.93413 4.99710 5.00497 5.09127 5.10097 5.26301 5.31754 5.69309 5.74240 5.89415 5.95798 6.07586 6.35447 6.46068 6.85415 7.11014 7.30595 8.05812 8.41791 8.62075 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.003015 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.178344 B = 9283.731683 C =11007.154764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 C -0.084 4.084 4 C 0.151 3.849 5 N -0.738 5.738 6 C 0.656 3.344 7 O -0.515 6.515 8 N -0.662 5.662 9 C 0.365 3.635 10 C -0.347 4.347 11 C -0.034 4.034 12 C -0.333 4.333 13 C 0.237 3.763 14 C -0.468 4.468 15 H 0.084 0.916 16 C 0.011 3.989 17 N -0.683 5.683 18 Si 0.972 3.028 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.261 1.261 22 N -0.507 5.507 23 C -0.150 4.150 24 C 0.177 3.823 25 F -0.172 7.172 26 F -0.170 7.170 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.405 0.595 35 H 0.417 0.583 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.103 0.897 39 H 0.270 0.730 40 H 0.140 0.860 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.373 -13.201 -7.460 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.116 4.116 3 C -0.122 4.122 4 C 0.026 3.974 5 N -0.399 5.399 6 C 0.354 3.646 7 O -0.383 6.383 8 N -0.312 5.312 9 C 0.125 3.875 10 C -0.372 4.372 11 C -0.058 4.058 12 C -0.356 4.356 13 C 0.111 3.889 14 C -0.498 4.498 15 H 0.102 0.898 16 C -0.215 4.215 17 N -0.302 5.302 18 Si 0.793 3.207 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.185 1.185 22 N -0.226 5.226 23 C -0.187 4.187 24 C 0.140 3.860 25 F -0.152 7.152 26 F -0.150 7.150 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.241 0.759 35 H 0.255 0.745 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.158 0.842 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.018 -14.540 -6.964 18.006 hybrid contribution 0.507 0.774 -0.435 1.022 sum 8.525 -13.766 -7.399 17.802 Atomic orbital electron populations 1.21559 0.89989 1.04004 1.03291 1.22773 0.97173 0.91790 0.99882 1.21221 0.99060 0.90250 1.01648 1.21087 0.95969 0.80407 0.99900 1.44986 1.28545 1.08906 1.57471 1.16724 0.84925 0.81171 0.81772 1.91381 1.21681 1.81277 1.43967 1.42392 1.22499 1.06539 1.59807 1.18845 0.91259 0.85689 0.91676 1.20917 1.06519 0.91694 1.18097 1.21024 0.93229 0.98279 0.93310 1.21801 1.02188 0.97465 1.14101 1.18874 0.92816 0.87502 0.89685 1.19867 1.04917 0.95052 1.29999 0.89757 1.27016 1.01878 0.95995 0.96597 1.70544 1.33825 0.99865 1.25978 0.85430 0.78048 0.77865 0.79327 1.18653 1.19746 1.18542 1.68658 1.07390 1.32606 1.13951 1.24801 1.04953 0.99891 0.89038 1.20537 0.80838 0.94688 0.89907 1.92984 1.72616 1.65638 1.83992 1.92992 1.45340 1.92777 1.83904 0.91370 0.90495 0.90576 0.89476 0.88543 0.92806 0.92786 0.75908 0.74541 0.85039 0.84549 0.87871 0.91956 0.84213 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.13 71.98 0.66 -1.59 16 2 C -0.11 -1.81 2.46 -52.18 -0.13 -1.94 16 3 C -0.08 -1.34 5.16 30.59 0.16 -1.18 16 4 C 0.15 3.63 4.68 86.38 0.40 4.03 16 5 N -0.74 -19.84 5.56 -478.54 -2.66 -22.50 16 6 C 0.66 26.37 8.52 179.05 1.53 27.89 16 7 O -0.52 -26.79 12.10 -3.97 -0.05 -26.84 16 8 N -0.66 -25.33 5.39 -322.12 -1.74 -27.07 16 9 C 0.37 17.76 7.43 133.26 0.99 18.75 16 10 C -0.35 -14.79 9.95 22.72 0.23 -14.57 16 11 C -0.03 -1.50 10.15 22.39 0.23 -1.27 16 12 C -0.33 -16.98 9.83 22.87 0.22 -16.75 16 13 C 0.24 13.83 6.55 40.19 0.26 14.10 16 14 C -0.47 -26.92 9.14 23.47 0.21 -26.70 16 15 H 0.08 4.54 7.85 -2.91 -0.02 4.52 16 16 C 0.01 0.60 5.50 85.29 0.47 1.07 16 17 N -0.68 -39.55 8.98 21.84 0.20 -39.35 16 18 Si 0.97 40.82 29.56 68.60 2.03 42.84 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 22 N -0.51 -29.40 5.74 -186.37 -1.07 -30.47 16 23 C -0.15 -1.82 9.80 30.62 0.30 -1.52 16 24 C 0.18 3.06 5.14 30.62 0.16 3.22 16 25 F -0.17 -3.51 17.14 44.97 0.77 -2.74 16 26 F -0.17 -3.31 17.15 44.97 0.77 -2.54 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.13 7.90 -2.39 -0.02 1.11 16 29 H 0.08 1.52 5.59 -2.38 -0.01 1.51 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.23 7.90 -2.39 -0.02 1.21 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.50 6.45 -2.39 -0.02 1.49 16 34 H 0.41 7.56 8.49 -92.71 -0.79 6.77 16 35 H 0.42 11.45 8.71 -92.71 -0.81 10.64 16 36 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.14 4.76 8.06 -2.91 -0.02 4.73 16 38 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 39 H 0.27 14.70 8.29 -92.71 -0.77 13.93 16 40 H 0.14 1.25 8.05 -2.39 -0.02 1.23 16 41 H 0.14 1.29 8.05 -2.39 -0.02 1.27 16 Total: -1.00 -76.98 352.26 3.44 -73.54 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.50 Total: 31.58 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 5.69 Total: 3.55 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -5.27 Total: -119.39 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 1.54 Total: -5.28 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Total: -76.98 3.44 -73.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881141944.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.261 kcal (2) G-P(sol) polarization free energy of solvation -76.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds