Wall clock time and date at job start Tue Mar 31 2020 14:19:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52993 * 115.56206 * 2 1
4 4 C 1.53003 * 117.49832 * 145.69201 * 2 1 3
5 5 H 1.08997 * 117.51662 * 0.02562 * 4 2 1
6 6 C 1.52999 * 117.49723 * 214.97499 * 4 2 1
7 7 N 1.46501 * 109.46843 * 174.98502 * 6 4 2
8 8 C 1.34780 * 119.99936 * 180.02562 * 7 6 4
9 9 O 1.21576 * 119.99852 * 359.97438 * 8 7 6
10 10 N 1.34773 * 119.99738 * 180.02562 * 8 7 6
11 11 C 1.39254 * 119.99496 * 185.14953 * 10 8 7
12 12 C 1.39689 * 119.57337 * 174.64028 * 11 10 8
13 13 C 1.38642 * 119.49584 * 180.02562 * 12 11 10
14 14 C 1.38361 * 118.66868 * 0.27092 * 13 12 11
15 15 C 1.40570 * 119.12964 * 359.44290 * 14 13 12
16 16 C 1.41331 * 119.78780 * 180.27153 * 15 14 13
17 17 H 1.08008 * 120.00058 * 0.29997 * 16 15 14
18 18 C 1.40028 * 120.00420 * 180.29679 * 16 15 14
19 19 N 1.30741 * 119.99702 * 359.97438 * 18 16 15
20 20 Si 1.86801 * 120.00288 * 180.02562 * 18 16 15
21 21 H 1.48492 * 109.47297 * 89.99750 * 20 18 16
22 22 H 1.48500 * 109.46979 * 210.00173 * 20 18 16
23 23 H 1.48508 * 109.46838 * 329.99807 * 20 18 16
24 24 N 1.31901 * 119.57521 * 354.62090 * 11 10 8
25 25 C 1.53000 * 117.49605 * 214.31268 * 2 1 3
26 26 F 1.39895 * 117.50042 * 145.02012 * 25 2 1
27 27 F 1.39901 * 117.51873 * 359.97438 * 25 2 1
28 28 H 1.08999 * 109.47177 * 274.31323 * 1 2 3
29 29 H 1.09008 * 109.47337 * 34.30520 * 1 2 3
30 30 H 1.09004 * 109.47453 * 154.31214 * 1 2 3
31 31 H 1.09007 * 109.47077 * 205.69306 * 3 2 1
32 32 H 1.09003 * 109.47560 * 325.68616 * 3 2 1
33 33 H 1.08999 * 109.47434 * 85.69265 * 3 2 1
34 34 H 1.08998 * 109.46781 * 54.98795 * 6 4 2
35 35 H 1.08995 * 109.47453 * 294.98762 * 6 4 2
36 36 H 0.97005 * 119.99850 * 0.02562 * 7 6 4
37 37 H 0.96994 * 120.00331 * 5.14331 * 10 8 7
38 38 H 1.08004 * 120.24968 * 359.97438 * 12 11 10
39 39 H 1.07999 * 120.66519 * 180.02562 * 13 12 11
40 40 H 1.07998 * 120.43047 * 179.73099 * 14 13 12
41 41 H 0.97005 * 120.00059 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1901 1.3802 0.0000
4 6 2.2364 -1.1211 0.7650
5 1 1.6115 -1.8589 1.2679
6 6 3.5490 -0.7760 1.4713
7 7 4.0083 -1.9346 2.2414
8 6 5.1520 -1.8619 2.9507
9 8 5.8028 -0.8350 2.9511
10 7 5.5748 -2.9279 3.6587
11 6 6.6970 -2.8202 4.4760
12 6 7.0619 -3.8942 5.2913
13 6 8.1792 -3.7850 6.1048
14 6 8.9000 -2.6041 6.0875
15 6 8.4853 -1.5616 5.2406
16 6 9.2146 -0.3515 5.2076
17 1 10.0904 -0.2317 5.8283
18 6 8.8019 0.6922 4.3703
19 7 7.7421 0.5471 3.6186
20 14 9.7664 2.2914 4.3262
21 1 10.8212 2.2048 3.2846
22 1 8.8483 3.4146 4.0089
23 1 10.3965 2.5261 5.6504
24 7 7.4020 -1.7054 4.4702
25 6 2.2364 -1.1210 -0.7651
26 9 3.4365 -0.8055 -1.4110
27 9 1.4342 -2.0680 -1.4107
28 1 -0.3633 0.0773 1.0247
29 1 -0.3634 0.8489 -0.5792
30 1 -0.3634 -0.9261 -0.4455
31 1 3.1824 1.3084 -0.4456
32 1 1.5812 2.0743 -0.5793
33 1 2.2773 1.7413 1.0247
34 1 3.3891 0.0669 2.1436
35 1 4.3022 -0.5111 0.7294
36 1 3.4892 -2.7541 2.2407
37 1 5.0974 -3.7701 3.5989
38 1 6.4775 -4.8025 5.2884
39 1 8.4786 -4.6038 6.7422
40 1 9.7725 -2.4866 6.7130
41 1 7.4560 1.2702 3.0388
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000881141959.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:19:23
Heat of formation + Delta-G solvation = -38.317162 kcal
Electronic energy + Delta-G solvation = -27509.453090 eV
Core-core repulsion = 23255.331851 eV
Total energy + Delta-G solvation = -4254.121239 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.134 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-48.85328 -47.51479 -39.54974 -38.44128 -37.50726 -34.30379 -33.70265 -32.95412
-30.29186 -29.95845 -28.84355 -28.00311 -26.23165 -25.30521 -22.16382 -21.48806
-21.10911 -20.10477 -19.47057 -18.01212 -17.80961 -17.16657 -16.68279 -16.22889
-16.06217 -15.16370 -14.80983 -14.56894 -14.40073 -14.17926 -14.16749 -13.81418
-13.64596 -13.51982 -13.42589 -13.15005 -12.97120 -12.78522 -12.72274 -12.53793
-12.13942 -11.91687 -11.89175 -11.45477 -11.13302 -10.91807 -10.61465 -10.56660
-10.43067 -9.91637 -9.89131 -9.65673 -9.12431 -8.99537 -8.51106 -7.92044
-7.18477 -6.91479 -6.07638 -4.35558 2.70497 2.80392 2.87466 3.14008
3.16352 3.19868 3.22236 3.30555 3.94855 3.98861 4.10052 4.22433
4.38571 4.51944 4.74929 4.88036 4.98833 5.04723 5.23167 5.34496
5.43388 5.49676 5.50480 5.71353 5.76101 5.88623 5.99175 6.08662
6.13018 6.50505 6.62896 6.81655 6.87974 6.91435 7.26507 7.37074
7.65102 7.76184 7.84927 8.20283 8.32587 8.67027 8.83161 9.09727
9.59236 10.30377 10.53366
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.013899 B = 0.003479 C = 0.002928
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2014.114169 B = 8046.597687 C = 9561.314407
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.108 4.108
3 C -0.128 4.128
4 C -0.153 4.153
5 H 0.134 0.866
6 C 0.173 3.827
7 N -0.760 5.760
8 C 0.664 3.336
9 O -0.460 6.460
10 N -0.673 5.673
11 C 0.387 3.613
12 C -0.358 4.358
13 C -0.036 4.036
14 C -0.307 4.307
15 C 0.271 3.729
16 C -0.425 4.425
17 H 0.082 0.918
18 C 0.057 3.943
19 N -0.649 5.649
20 Si 0.894 3.106
21 H -0.272 1.272
22 H -0.278 1.278
23 H -0.264 1.264
24 N -0.472 5.472
25 C 0.196 3.804
26 F -0.153 7.153
27 F -0.162 7.162
28 H 0.075 0.925
29 H 0.071 0.929
30 H 0.068 0.932
31 H 0.073 0.927
32 H 0.070 0.930
33 H 0.079 0.921
34 H 0.080 0.920
35 H 0.076 0.924
36 H 0.385 0.615
37 H 0.395 0.605
38 H 0.090 0.910
39 H 0.095 0.905
40 H 0.096 0.904
41 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.599 -1.007 -7.808 17.473
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.110 4.110
3 C -0.185 4.185
4 C -0.173 4.173
5 H 0.151 0.849
6 C 0.048 3.952
7 N -0.421 5.421
8 C 0.362 3.638
9 O -0.324 6.324
10 N -0.321 5.321
11 C 0.147 3.853
12 C -0.384 4.384
13 C -0.060 4.060
14 C -0.330 4.330
15 C 0.146 3.854
16 C -0.456 4.456
17 H 0.100 0.900
18 C -0.173 4.173
19 N -0.267 5.267
20 Si 0.718 3.282
21 H -0.197 1.197
22 H -0.204 1.204
23 H -0.188 1.188
24 N -0.190 5.190
25 C 0.159 3.841
26 F -0.134 7.134
27 F -0.142 7.142
28 H 0.094 0.906
29 H 0.090 0.910
30 H 0.087 0.913
31 H 0.092 0.908
32 H 0.089 0.911
33 H 0.098 0.902
34 H 0.098 0.902
35 H 0.094 0.906
36 H 0.217 0.783
37 H 0.228 0.772
38 H 0.108 0.892
39 H 0.114 0.886
40 H 0.114 0.886
41 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -15.334 0.870 -8.574 17.590
hybrid contribution 0.135 -1.234 0.193 1.256
sum -15.199 -0.364 -8.381 17.361
Atomic orbital electron populations
1.21422 0.89901 1.03336 1.03294 1.22996 0.96914 0.92858 0.98243
1.21460 1.01176 0.92141 1.03752 1.24124 1.00550 1.01690 0.90891
0.84853 1.20473 0.91299 0.88886 0.94563 1.45233 1.26377 1.16079
1.54374 1.16385 0.81480 0.85543 0.80343 1.91395 1.52610 1.27073
1.61321 1.42533 1.29850 1.12841 1.46871 1.18336 0.86675 0.91862
0.88420 1.20432 1.06368 0.99997 1.11631 1.20545 0.93741 0.96016
0.95716 1.21620 1.05142 0.96735 1.09523 1.18387 0.88135 0.91999
0.86868 1.19574 1.09693 0.96340 1.19973 0.90006 1.26188 0.95420
0.99908 0.95749 1.70350 1.14950 1.29831 1.11595 0.86550 0.80236
0.81872 0.79494 1.19697 1.20358 1.18796 1.68687 1.07486 1.18906
1.23944 1.20420 0.81098 0.94007 0.88554 1.93014 1.44715 1.92484
1.83155 1.92989 1.72230 1.65428 1.83563 0.90642 0.90990 0.91348
0.90823 0.91093 0.90231 0.90160 0.90577 0.78278 0.77226 0.89178
0.88640 0.88603 0.91674
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.81 9.82 37.16 0.36 -0.45 16
2 C -0.11 -0.95 2.70 -154.51 -0.42 -1.37 16
3 C -0.13 -1.10 8.83 37.15 0.33 -0.77 16
4 C -0.15 -1.50 5.55 -90.62 -0.50 -2.00 16
5 H 0.13 1.05 8.04 -51.93 -0.42 0.63 16
6 C 0.17 2.29 5.02 -4.04 -0.02 2.27 16
7 N -0.76 -11.08 5.56 -65.23 -0.36 -11.44 16
8 C 0.66 13.62 8.52 -86.92 -0.74 12.88 16
9 O -0.46 -11.75 12.10 5.30 0.06 -11.69 16
10 N -0.67 -13.42 5.39 -15.78 -0.09 -13.50 16
11 C 0.39 9.56 7.43 -154.99 -1.15 8.41 16
12 C -0.36 -8.13 9.95 -38.89 -0.39 -8.51 16
13 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16
14 C -0.31 -7.83 9.83 -38.66 -0.38 -8.21 16
15 C 0.27 7.72 6.55 -85.00 -0.56 7.17 16
16 C -0.43 -11.84 9.14 -37.74 -0.34 -12.19 16
17 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16
18 C 0.06 1.51 5.50 -17.35 -0.10 1.42 16
19 N -0.65 -18.19 8.98 55.55 0.50 -17.69 16
20 Si 0.89 19.43 29.56 -169.99 -5.02 14.40 16
21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16
22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16
23 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16
24 N -0.47 -13.44 5.74 -10.26 -0.06 -13.50 16
25 C 0.20 2.17 5.08 -26.73 -0.14 2.04 16
26 F -0.15 -2.06 15.37 2.25 0.03 -2.02 16
27 F -0.16 -1.85 16.50 2.25 0.04 -1.82 16
28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
29 H 0.07 0.41 7.92 -51.92 -0.41 -0.01 16
30 H 0.07 0.46 7.10 -51.93 -0.37 0.09 16
31 H 0.07 0.73 7.10 -51.93 -0.37 0.36 16
32 H 0.07 0.49 7.92 -51.93 -0.41 0.08 16
33 H 0.08 0.67 7.83 -51.93 -0.41 0.26 16
34 H 0.08 1.12 7.77 -51.93 -0.40 0.71 16
35 H 0.08 1.17 7.06 -51.93 -0.37 0.80 16
36 H 0.38 4.25 8.42 -40.82 -0.34 3.91 16
37 H 0.39 6.02 8.71 -40.82 -0.36 5.66 16
38 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16
39 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16
40 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16
41 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16
LS Contribution 350.93 15.07 5.29 5.29
Total: -1.00 -33.94 350.93 -9.14 -43.07
By element:
Atomic # 1 Polarization: 14.53 SS G_CDS: -5.09 Total: 9.44 kcal
Atomic # 6 Polarization: 3.89 SS G_CDS: -4.44 Total: -0.55 kcal
Atomic # 7 Polarization: -56.12 SS G_CDS: -0.01 Total: -56.13 kcal
Atomic # 8 Polarization: -11.75 SS G_CDS: 0.06 Total: -11.69 kcal
Atomic # 9 Polarization: -3.91 SS G_CDS: 0.07 Total: -3.84 kcal
Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.40 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -33.94 -9.14 -43.07 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000881141959.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.756 kcal
(2) G-P(sol) polarization free energy of solvation -33.935 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.179 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.317 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds