Wall clock time and date at job start Tue Mar 31 2020 14:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 115.55856 * 2 1 4 4 C 1.52998 * 117.50029 * 145.68464 * 2 1 3 5 5 H 1.09003 * 117.50152 * 215.00328 * 4 2 1 6 6 C 1.53000 * 117.50099 * 0.02562 * 4 2 1 7 7 N 1.46499 * 109.47462 * 184.91058 * 6 4 2 8 8 C 1.34769 * 120.00228 * 179.97438 * 7 6 4 9 9 O 1.21581 * 119.99960 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00095 * 179.72645 * 8 7 6 11 11 C 1.39244 * 119.99853 * 175.13886 * 10 8 7 12 12 C 1.39688 * 119.57356 * 185.40893 * 11 10 8 13 13 C 1.38646 * 119.49419 * 179.72522 * 12 11 10 14 14 C 1.38353 * 118.67308 * 0.52990 * 13 12 11 15 15 C 1.40577 * 119.13005 * 359.73384 * 14 13 12 16 16 C 1.41326 * 119.78980 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99817 * 0.02562 * 16 15 14 18 18 C 1.40020 * 120.00326 * 180.02562 * 16 15 14 19 19 N 1.30742 * 119.99942 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 120.00249 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46842 * 90.00146 * 20 18 16 22 22 H 1.48497 * 109.47175 * 210.00381 * 20 18 16 23 23 H 1.48504 * 109.46883 * 330.00203 * 20 18 16 24 24 N 1.31903 * 119.57734 * 5.66954 * 11 10 8 25 25 C 1.53006 * 60.03121 * 107.50406 * 4 2 1 26 26 F 1.39897 * 117.49515 * 107.47594 * 25 4 2 27 27 F 1.39893 * 117.50115 * 252.47485 * 25 4 2 28 28 H 1.09002 * 109.47262 * 274.30713 * 1 2 3 29 29 H 1.09000 * 109.47305 * 34.31598 * 1 2 3 30 30 H 1.09002 * 109.46671 * 154.31025 * 1 2 3 31 31 H 1.09002 * 109.46652 * 205.68909 * 3 2 1 32 32 H 1.08996 * 109.46994 * 325.68556 * 3 2 1 33 33 H 1.09004 * 109.47022 * 85.69027 * 3 2 1 34 34 H 1.09001 * 109.47169 * 64.90561 * 6 4 2 35 35 H 1.09005 * 109.46988 * 304.90983 * 6 4 2 36 36 H 0.96998 * 119.99720 * 0.02562 * 7 6 4 37 37 H 0.96999 * 120.00054 * 355.13076 * 10 8 7 38 38 H 1.08003 * 120.25251 * 359.97066 * 12 11 10 39 39 H 1.07996 * 120.66403 * 180.26270 * 13 12 11 40 40 H 1.07996 * 120.43850 * 179.74927 * 14 13 12 41 41 H 0.97004 * 119.99890 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3804 0.0000 4 6 2.2365 -1.1209 0.7651 5 1 3.1714 -0.8750 1.2687 6 6 1.3589 -2.1564 1.4711 7 7 2.2060 -3.0721 2.2394 8 6 1.6470 -4.0729 2.9480 9 8 0.4396 -4.2161 2.9494 10 7 2.4267 -4.9186 3.6504 11 6 1.8458 -5.8891 4.4626 12 6 2.6578 -6.6859 5.2731 13 6 2.0773 -7.6478 6.0855 14 6 0.7020 -7.7967 6.0593 15 6 -0.0601 -6.9678 5.2178 16 6 -1.4659 -7.1083 5.1796 17 1 -1.9513 -7.8505 5.7961 18 6 -2.2293 -6.2854 4.3426 19 7 -1.6417 -5.3874 3.5960 20 14 -4.0874 -6.4717 4.2917 21 1 -4.7019 -5.5838 5.3111 22 1 -4.5857 -6.0971 2.9439 23 1 -4.4515 -7.8823 4.5796 24 7 0.5364 -6.0476 4.4529 25 6 2.2372 -1.1215 -0.7650 26 9 3.4375 -0.8058 -1.4104 27 9 1.4358 -2.0689 -1.4109 28 1 -0.3634 0.0772 1.0248 29 1 -0.3634 0.8488 -0.5793 30 1 -0.3633 -0.9261 -0.4455 31 1 3.1824 1.3085 -0.4455 32 1 1.5812 2.0743 -0.5793 33 1 2.2772 1.7414 1.0248 34 1 0.7939 -2.7204 0.7290 35 1 0.6684 -1.6488 2.1447 36 1 3.1692 -2.9576 2.2386 37 1 3.3925 -4.8514 3.5899 38 1 3.7294 -6.5510 5.2700 39 1 2.6867 -8.2713 6.7228 40 1 0.2203 -8.5398 6.6774 41 1 -2.1706 -4.8175 3.0158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881141961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:25 Heat of formation + Delta-G solvation = -38.361144 kcal Electronic energy + Delta-G solvation = -27509.508650 eV Core-core repulsion = 23255.385503 eV Total energy + Delta-G solvation = -4254.123146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.85237 -47.51429 -39.54953 -38.43836 -37.50633 -34.30413 -33.70243 -32.95418 -30.29139 -29.95863 -28.84324 -28.00308 -26.23110 -25.30536 -22.16370 -21.48802 -21.10899 -20.10465 -19.46966 -18.01187 -17.80885 -17.16675 -16.68321 -16.22889 -16.06206 -15.16419 -14.80873 -14.56948 -14.40000 -14.17903 -14.16781 -13.81331 -13.64641 -13.52047 -13.42577 -13.14946 -12.97184 -12.78531 -12.72297 -12.53875 -12.13947 -11.91979 -11.88853 -11.45437 -11.13260 -10.91822 -10.61488 -10.56756 -10.43059 -9.90988 -9.89360 -9.65857 -9.12408 -8.99513 -8.51157 -7.92028 -7.18499 -6.91419 -6.07633 -4.35563 2.70275 2.80386 2.87420 3.13971 3.16424 3.19910 3.22364 3.30484 3.94924 3.98885 4.10043 4.22397 4.38669 4.51895 4.74915 4.87992 4.98851 5.04685 5.23153 5.34499 5.43388 5.49646 5.50458 5.71306 5.75992 5.88581 5.99136 6.08612 6.13127 6.50539 6.62906 6.81653 6.87984 6.91423 7.26516 7.37056 7.65130 7.76206 7.84960 8.20292 8.32601 8.67021 8.83191 9.09736 9.59201 10.30399 10.53364 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.003479 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.314555 B = 8045.274202 C = 9559.094428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.108 4.108 3 C -0.123 4.123 4 C -0.153 4.153 5 H 0.134 0.866 6 C 0.173 3.827 7 N -0.760 5.760 8 C 0.664 3.336 9 O -0.460 6.460 10 N -0.672 5.672 11 C 0.387 3.613 12 C -0.358 4.358 13 C -0.036 4.036 14 C -0.307 4.307 15 C 0.271 3.729 16 C -0.425 4.425 17 H 0.082 0.918 18 C 0.057 3.943 19 N -0.649 5.649 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.264 1.264 24 N -0.472 5.472 25 C 0.196 3.804 26 F -0.162 7.162 27 F -0.153 7.153 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.385 0.615 37 H 0.395 0.605 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.634 13.677 -7.764 17.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.110 4.110 3 C -0.179 4.179 4 C -0.172 4.172 5 H 0.151 0.849 6 C 0.048 3.952 7 N -0.421 5.421 8 C 0.363 3.637 9 O -0.324 6.324 10 N -0.321 5.321 11 C 0.147 3.853 12 C -0.384 4.384 13 C -0.060 4.060 14 C -0.330 4.330 15 C 0.146 3.854 16 C -0.456 4.456 17 H 0.100 0.900 18 C -0.173 4.173 19 N -0.267 5.267 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.188 1.188 24 N -0.190 5.190 25 C 0.159 3.841 26 F -0.142 7.142 27 F -0.134 7.134 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.217 0.783 37 H 0.228 0.772 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.827 14.244 -8.535 17.598 hybrid contribution 1.054 -0.646 0.203 1.253 sum 6.881 13.598 -8.332 17.368 Atomic orbital electron populations 1.21461 0.89656 1.03660 1.03748 1.23011 0.97423 0.92331 0.98241 1.21423 1.00788 0.92447 1.03290 1.24124 1.03009 0.99225 0.90892 0.84856 1.20476 0.91441 0.88716 0.94596 1.45227 1.09194 1.33197 1.54435 1.16384 0.86848 0.80178 0.80339 1.91396 1.09489 1.70305 1.61225 1.42534 1.08534 1.33707 1.47318 1.18333 0.91389 0.87081 0.88487 1.20432 0.97379 1.08903 1.11717 1.20543 0.94507 0.95273 0.95695 1.21620 0.93797 1.07873 1.09728 1.18388 0.93499 0.86610 0.86891 1.19572 0.90197 1.15683 1.20124 0.90006 1.26186 0.99904 0.95425 0.95746 1.70350 1.35388 1.09247 1.11744 0.86552 0.83854 0.79614 0.78141 1.19705 1.20351 1.18788 1.68688 1.04922 1.21534 1.23882 1.20431 0.80956 0.94140 0.88566 1.92988 1.45080 1.92573 1.83570 1.93014 1.72075 1.65118 1.83154 0.90231 0.91093 0.90826 0.91349 0.90990 0.90640 0.90572 0.90163 0.78278 0.77225 0.89179 0.88642 0.88602 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 8.83 37.16 0.33 -0.77 16 2 C -0.11 -0.95 2.70 -154.47 -0.42 -1.37 16 3 C -0.12 -0.81 9.82 37.16 0.36 -0.44 16 4 C -0.15 -1.50 5.55 -90.62 -0.50 -2.00 16 5 H 0.13 1.05 8.04 -51.93 -0.42 0.63 16 6 C 0.17 2.28 5.02 -4.04 -0.02 2.26 16 7 N -0.76 -11.08 5.56 -65.23 -0.36 -11.44 16 8 C 0.66 13.62 8.52 -86.92 -0.74 12.88 16 9 O -0.46 -11.75 12.11 5.29 0.06 -11.69 16 10 N -0.67 -13.42 5.39 -15.79 -0.09 -13.50 16 11 C 0.39 9.57 7.43 -155.00 -1.15 8.41 16 12 C -0.36 -8.13 9.96 -38.89 -0.39 -8.52 16 13 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 14 C -0.31 -7.83 9.83 -38.66 -0.38 -8.21 16 15 C 0.27 7.72 6.55 -85.00 -0.56 7.17 16 16 C -0.43 -11.84 9.14 -37.74 -0.34 -12.19 16 17 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 18 C 0.06 1.51 5.50 -17.35 -0.10 1.42 16 19 N -0.65 -18.19 8.99 55.55 0.50 -17.69 16 20 Si 0.89 19.43 29.56 -169.99 -5.02 14.40 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 24 N -0.47 -13.44 5.74 -10.26 -0.06 -13.50 16 25 C 0.20 2.17 5.08 -26.69 -0.14 2.03 16 26 F -0.16 -1.85 16.50 2.25 0.04 -1.82 16 27 F -0.15 -2.06 15.38 2.25 0.03 -2.02 16 28 H 0.08 0.66 7.84 -51.93 -0.41 0.26 16 29 H 0.07 0.49 7.92 -51.93 -0.41 0.08 16 30 H 0.07 0.73 7.11 -51.93 -0.37 0.36 16 31 H 0.07 0.46 7.10 -51.93 -0.37 0.09 16 32 H 0.07 0.41 7.92 -51.93 -0.41 -0.01 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 1.17 7.06 -51.93 -0.37 0.81 16 35 H 0.08 1.11 7.77 -51.93 -0.40 0.71 16 36 H 0.38 4.25 8.42 -40.82 -0.34 3.91 16 37 H 0.39 6.02 8.71 -40.82 -0.36 5.67 16 38 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 39 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 40 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 41 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 LS Contribution 350.96 15.07 5.29 5.29 Total: -1.00 -33.95 350.96 -9.14 -43.09 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.09 Total: 9.43 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -4.44 Total: -0.54 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.01 Total: -56.13 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.06 Total: -11.69 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.07 Total: -3.84 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.95 -9.14 -43.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881141961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.725 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds