Wall clock time and date at job start Tue Mar 31 2020 14:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 115.55856 * 2 1 4 4 C 1.52998 * 117.50029 * 145.68464 * 2 1 3 5 5 H 1.09003 * 117.50152 * 215.00328 * 4 2 1 6 6 C 1.53000 * 117.50099 * 0.02562 * 4 2 1 7 7 N 1.46499 * 109.47462 * 184.91058 * 6 4 2 8 8 C 1.34769 * 120.00228 * 179.97438 * 7 6 4 9 9 O 1.21581 * 119.99960 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00095 * 179.72645 * 8 7 6 11 11 C 1.39244 * 119.99853 * 175.13886 * 10 8 7 12 12 C 1.39688 * 119.57356 * 185.40893 * 11 10 8 13 13 C 1.38646 * 119.49419 * 179.72522 * 12 11 10 14 14 C 1.38353 * 118.67308 * 0.52990 * 13 12 11 15 15 C 1.40577 * 119.13005 * 359.73384 * 14 13 12 16 16 C 1.41326 * 119.78980 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99817 * 0.02562 * 16 15 14 18 18 C 1.40020 * 120.00326 * 180.02562 * 16 15 14 19 19 N 1.30742 * 119.99942 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 120.00249 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46842 * 90.00146 * 20 18 16 22 22 H 1.48497 * 109.47175 * 210.00381 * 20 18 16 23 23 H 1.48504 * 109.46883 * 330.00203 * 20 18 16 24 24 N 1.31903 * 119.57734 * 5.66954 * 11 10 8 25 25 C 1.53006 * 60.03121 * 107.50406 * 4 2 1 26 26 F 1.39897 * 117.49515 * 107.47594 * 25 4 2 27 27 F 1.39893 * 117.50115 * 252.47485 * 25 4 2 28 28 H 1.09002 * 109.47262 * 274.30713 * 1 2 3 29 29 H 1.09000 * 109.47305 * 34.31598 * 1 2 3 30 30 H 1.09002 * 109.46671 * 154.31025 * 1 2 3 31 31 H 1.09002 * 109.46652 * 205.68909 * 3 2 1 32 32 H 1.08996 * 109.46994 * 325.68556 * 3 2 1 33 33 H 1.09004 * 109.47022 * 85.69027 * 3 2 1 34 34 H 1.09001 * 109.47169 * 64.90561 * 6 4 2 35 35 H 1.09005 * 109.46988 * 304.90983 * 6 4 2 36 36 H 0.96998 * 119.99720 * 0.02562 * 7 6 4 37 37 H 0.96999 * 120.00054 * 355.13076 * 10 8 7 38 38 H 1.08003 * 120.25251 * 359.97066 * 12 11 10 39 39 H 1.07996 * 120.66403 * 180.26270 * 13 12 11 40 40 H 1.07996 * 120.43850 * 179.74927 * 14 13 12 41 41 H 0.97004 * 119.99890 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3804 0.0000 4 6 2.2365 -1.1209 0.7651 5 1 3.1714 -0.8750 1.2687 6 6 1.3589 -2.1564 1.4711 7 7 2.2060 -3.0721 2.2394 8 6 1.6470 -4.0729 2.9480 9 8 0.4396 -4.2161 2.9494 10 7 2.4267 -4.9186 3.6504 11 6 1.8458 -5.8891 4.4626 12 6 2.6578 -6.6859 5.2731 13 6 2.0773 -7.6478 6.0855 14 6 0.7020 -7.7967 6.0593 15 6 -0.0601 -6.9678 5.2178 16 6 -1.4659 -7.1083 5.1796 17 1 -1.9513 -7.8505 5.7961 18 6 -2.2293 -6.2854 4.3426 19 7 -1.6417 -5.3874 3.5960 20 14 -4.0874 -6.4717 4.2917 21 1 -4.7019 -5.5838 5.3111 22 1 -4.5857 -6.0971 2.9439 23 1 -4.4515 -7.8823 4.5796 24 7 0.5364 -6.0476 4.4529 25 6 2.2372 -1.1215 -0.7650 26 9 3.4375 -0.8058 -1.4104 27 9 1.4358 -2.0689 -1.4109 28 1 -0.3634 0.0772 1.0248 29 1 -0.3634 0.8488 -0.5793 30 1 -0.3633 -0.9261 -0.4455 31 1 3.1824 1.3085 -0.4455 32 1 1.5812 2.0743 -0.5793 33 1 2.2772 1.7414 1.0248 34 1 0.7939 -2.7204 0.7290 35 1 0.6684 -1.6488 2.1447 36 1 3.1692 -2.9576 2.2386 37 1 3.3925 -4.8514 3.5899 38 1 3.7294 -6.5510 5.2700 39 1 2.6867 -8.2713 6.7228 40 1 0.2203 -8.5398 6.6774 41 1 -2.1706 -4.8175 3.0158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881141961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:24 Heat of formation + Delta-G solvation = -59.641468 kcal Electronic energy + Delta-G solvation = -27510.431434 eV Core-core repulsion = 23255.385503 eV Total energy + Delta-G solvation = -4255.045930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.75680 -48.43426 -41.15088 -39.72082 -38.93887 -35.98674 -35.20318 -34.81654 -32.19157 -31.23062 -30.27913 -28.69791 -27.64712 -26.91085 -23.84976 -23.07714 -22.41268 -21.53530 -20.53797 -19.71836 -18.87915 -18.55196 -18.00599 -17.63191 -16.97729 -16.64863 -16.30637 -16.24981 -16.00225 -15.61422 -15.11054 -15.01370 -14.82578 -14.77644 -14.58429 -14.51101 -14.22770 -14.05025 -13.68906 -13.67910 -13.44051 -13.14664 -12.89302 -12.85637 -12.70716 -12.53477 -12.29649 -12.18343 -11.75257 -11.52240 -11.36820 -10.89851 -10.85177 -10.68232 -9.93527 -9.83393 -9.09861 -8.77120 -8.00376 -6.39038 0.98492 1.30171 1.40599 1.52700 1.55177 1.69121 1.93674 2.00985 2.28308 2.56392 3.02763 3.05742 3.17409 3.50356 3.54611 3.84467 3.94238 4.09416 4.29675 4.37692 4.44523 4.56740 4.71164 4.75006 4.83831 4.84803 4.88575 4.92736 4.93022 4.98835 5.08326 5.18630 5.29330 5.30744 5.60304 5.69237 5.87148 5.94183 6.04218 6.32492 6.43863 6.84003 7.09422 7.24633 8.00166 8.39909 8.60484 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.003479 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.314555 B = 8045.274202 C = 9559.094428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 C -0.120 4.120 4 C -0.143 4.143 5 H 0.162 0.838 6 C 0.176 3.824 7 N -0.736 5.736 8 C 0.658 3.342 9 O -0.514 6.514 10 N -0.660 5.660 11 C 0.365 3.635 12 C -0.345 4.345 13 C -0.034 4.034 14 C -0.331 4.331 15 C 0.237 3.763 16 C -0.467 4.467 17 H 0.085 0.915 18 C 0.011 3.989 19 N -0.685 5.685 20 Si 0.972 3.028 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.256 1.256 24 N -0.508 5.508 25 C 0.172 3.828 26 F -0.164 7.164 27 F -0.174 7.174 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.406 0.594 37 H 0.418 0.582 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.104 0.896 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.298 14.960 -7.454 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.089 4.089 3 C -0.177 4.177 4 C -0.162 4.162 5 H 0.179 0.821 6 C 0.051 3.949 7 N -0.397 5.397 8 C 0.356 3.644 9 O -0.381 6.381 10 N -0.311 5.311 11 C 0.125 3.875 12 C -0.371 4.371 13 C -0.058 4.058 14 C -0.354 4.354 15 C 0.112 3.888 16 C -0.498 4.498 17 H 0.103 0.897 18 C -0.215 4.215 19 N -0.304 5.304 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.199 1.199 23 H -0.180 1.180 24 N -0.227 5.227 25 C 0.136 3.864 26 F -0.144 7.144 27 F -0.154 7.154 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.243 0.757 37 H 0.255 0.745 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.122 0.878 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.593 15.557 -8.240 19.172 hybrid contribution 0.747 -1.045 0.114 1.290 sum 8.339 14.512 -8.127 18.606 Atomic orbital electron populations 1.21516 0.89756 1.03543 1.04100 1.23154 0.97392 0.92911 0.95459 1.21496 1.00781 0.90832 1.04606 1.24065 1.03661 0.98709 0.89808 0.82073 1.20410 0.91871 0.88801 0.93789 1.44913 1.10447 1.31550 1.52819 1.16673 0.86412 0.80886 0.80455 1.91388 1.11938 1.71766 1.63032 1.42364 1.09670 1.32658 1.46423 1.18838 0.91022 0.88244 0.89423 1.20916 0.99322 1.07181 1.09668 1.21029 0.93862 0.95321 0.95603 1.21806 0.95242 1.08261 1.10125 1.18877 0.94495 0.87577 0.87900 1.19893 0.90943 1.17122 1.21794 0.89684 1.27029 1.04895 0.94680 0.94900 1.70557 1.37045 1.10196 1.12595 0.85366 0.77275 0.79807 0.78204 1.18970 1.19928 1.18007 1.68649 1.07034 1.22246 1.24758 1.20803 0.81316 0.95427 0.88862 1.92976 1.45204 1.92583 1.83671 1.92970 1.72695 1.66142 1.83612 0.89974 0.89029 0.92854 0.91202 0.89670 0.89058 0.93194 0.90825 0.75748 0.74492 0.84979 0.84457 0.87796 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.83 71.98 0.64 -1.53 16 2 C -0.09 -1.39 2.70 -52.15 -0.14 -1.53 16 3 C -0.12 -1.22 9.82 71.98 0.71 -0.51 16 4 C -0.14 -2.58 5.55 -10.79 -0.06 -2.64 16 5 H 0.16 2.01 8.04 -2.39 -0.02 1.99 16 6 C 0.18 4.66 5.02 86.38 0.43 5.09 16 7 N -0.74 -20.90 5.56 -478.54 -2.66 -23.56 16 8 C 0.66 27.15 8.52 179.06 1.53 28.68 16 9 O -0.51 -27.29 12.11 -3.97 -0.05 -27.34 16 10 N -0.66 -25.77 5.39 -322.12 -1.74 -27.50 16 11 C 0.36 17.91 7.43 133.26 0.99 18.90 16 12 C -0.35 -14.82 9.96 22.72 0.23 -14.60 16 13 C -0.03 -1.49 10.15 22.39 0.23 -1.26 16 14 C -0.33 -16.98 9.83 22.87 0.22 -16.76 16 15 C 0.24 13.94 6.55 40.19 0.26 14.20 16 16 C -0.47 -27.06 9.14 23.46 0.21 -26.85 16 17 H 0.09 4.62 7.85 -2.91 -0.02 4.59 16 18 C 0.01 0.59 5.50 85.29 0.47 1.06 16 19 N -0.69 -40.26 8.99 21.84 0.20 -40.07 16 20 Si 0.97 41.37 29.56 68.60 2.03 43.40 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 24 N -0.51 -29.74 5.74 -186.36 -1.07 -30.81 16 25 C 0.17 3.68 5.08 30.62 0.16 3.84 16 26 F -0.16 -3.54 16.50 44.97 0.74 -2.80 16 27 F -0.17 -4.80 15.38 44.97 0.69 -4.11 16 28 H 0.08 1.32 7.84 -2.39 -0.02 1.30 16 29 H 0.09 1.11 7.92 -2.39 -0.02 1.09 16 30 H 0.05 1.10 7.11 -2.39 -0.02 1.08 16 31 H 0.07 0.73 7.10 -2.39 -0.02 0.71 16 32 H 0.08 0.68 7.92 -2.39 -0.02 0.66 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 1.62 7.06 -2.39 -0.02 1.60 16 35 H 0.07 2.08 7.77 -2.38 -0.02 2.06 16 36 H 0.41 8.07 8.42 -92.71 -0.78 7.29 16 37 H 0.42 11.74 8.71 -92.71 -0.81 10.93 16 38 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 39 H 0.14 4.80 8.06 -2.91 -0.02 4.77 16 40 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 41 H 0.27 14.92 8.29 -92.71 -0.77 14.15 16 Total: -1.00 -78.38 350.96 3.52 -74.86 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -0.49 Total: 31.82 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 5.87 Total: 6.09 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -5.27 Total: -121.93 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.05 Total: -27.34 kcal Atomic # 9 Polarization: -8.34 SS G_CDS: 1.43 Total: -6.90 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -78.38 3.52 -74.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881141961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.216 kcal (2) G-P(sol) polarization free energy of solvation -78.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds