Wall clock time and date at job start Tue Mar 31 2020 14:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46893 * 2 1 4 4 C 1.50695 * 109.47274 * 120.00168 * 2 1 3 5 5 H 1.07996 * 120.00270 * 124.91871 * 4 2 1 6 6 C 1.37885 * 120.00036 * 304.91595 * 4 2 1 7 7 N 1.31513 * 119.99843 * 351.64004 * 6 4 2 8 8 Si 1.86792 * 120.00021 * 171.63580 * 6 4 2 9 9 H 1.48497 * 109.47377 * 60.00521 * 8 6 4 10 10 H 1.48502 * 109.47297 * 300.00058 * 8 6 4 11 11 H 1.48503 * 109.47208 * 180.02562 * 8 6 4 12 12 C 1.53002 * 109.47038 * 240.00065 * 2 1 3 13 13 N 1.46505 * 109.47090 * 59.99934 * 12 2 1 14 14 C 1.38554 * 119.99581 * 179.97438 * 13 12 2 15 15 C 1.39566 * 120.52683 * 359.72373 * 14 13 12 16 16 C 1.38278 * 118.32058 * 179.71167 * 15 14 13 17 17 Cl 1.73601 * 120.41439 * 180.26185 * 16 15 14 18 18 N 1.32686 * 119.16532 * 0.56116 * 16 15 14 19 19 C 1.31751 * 120.99101 * 359.72132 * 18 16 15 20 20 C 1.50710 * 119.07697 * 180.02562 * 19 18 16 21 21 H 1.09007 * 109.82313 * 195.54507 * 20 19 18 22 22 C 1.54378 * 109.83093 * 74.56742 * 20 19 18 23 23 C 1.55310 * 102.25269 * 219.13315 * 22 20 19 24 24 C 1.54949 * 100.94250 * 34.13047 * 23 22 20 25 25 O 1.43237 * 109.82930 * 316.43264 * 20 19 18 26 26 N 1.31765 * 121.84928 * 359.97438 * 19 18 16 27 27 H 1.08994 * 109.46965 * 292.91806 * 1 2 3 28 28 H 1.08999 * 109.46907 * 52.91689 * 1 2 3 29 29 H 1.09005 * 109.47016 * 172.92013 * 1 2 3 30 30 H 1.09002 * 109.47064 * 187.36056 * 3 2 1 31 31 H 1.09003 * 109.47312 * 307.35858 * 3 2 1 32 32 H 1.08994 * 109.47237 * 67.36013 * 3 2 1 33 33 H 0.97003 * 120.00052 * 5.71615 * 7 6 4 34 34 H 1.09001 * 109.46975 * 179.97438 * 12 2 1 35 35 H 1.09000 * 109.47315 * 299.99646 * 12 2 1 36 36 H 0.97000 * 119.99806 * 359.97438 * 13 12 2 37 37 H 1.07997 * 120.83325 * 0.02562 * 15 14 13 38 38 H 1.09004 * 110.84647 * 337.31381 * 22 20 19 39 39 H 1.08994 * 110.85227 * 100.93449 * 22 20 19 40 40 H 1.08998 * 111.12076 * 276.21180 * 23 22 20 41 41 H 1.08990 * 111.16157 * 152.06540 * 23 22 20 42 42 H 1.08999 * 110.30709 * 204.64391 * 24 23 22 43 43 H 1.08995 * 110.39514 * 82.51374 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.7171 -1.5399 1.1333 6 6 1.6178 -0.3014 2.4802 7 7 0.9188 0.8048 2.6117 8 14 2.0490 -1.3185 3.9865 9 1 3.5254 -1.4154 4.1123 10 1 1.4737 -2.6802 3.8455 11 1 1.4901 -0.6686 5.1992 12 6 2.0400 -0.7212 -1.2493 13 7 1.5516 -0.0306 -2.4455 14 6 1.8868 -0.5037 -3.7038 15 6 2.6937 -1.6338 -3.8446 16 6 2.9948 -2.0699 -5.1218 17 17 3.9881 -3.4736 -5.3598 18 7 2.5200 -1.3984 -6.1631 19 6 1.7655 -0.3314 -5.9955 20 6 1.2488 0.3982 -7.2087 21 1 0.8874 1.3854 -6.9204 22 6 0.1059 -0.4106 -7.8590 23 6 0.3842 -0.2148 -9.3743 24 6 1.9329 -0.1650 -9.3849 25 8 2.2941 0.5278 -8.1795 26 7 1.4491 0.1151 -4.7968 27 1 -0.3633 0.4002 0.9465 28 1 -0.3633 0.6197 -0.8198 29 1 -0.3633 -1.0199 -0.1267 30 1 3.1220 1.4454 -0.1317 31 1 1.5731 1.9930 -0.8168 32 1 1.7881 1.9169 0.9484 33 1 0.6239 1.2887 1.8245 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2493 36 1 0.9937 0.7578 -2.3564 37 1 3.0690 -2.1574 -2.9778 38 1 0.1716 -1.4637 -7.5855 39 1 -0.8653 0.0022 -7.5864 40 1 -0.0414 0.7219 -9.7340 41 1 0.0144 -1.0600 -9.9547 42 1 2.2878 0.3835 -10.2574 43 1 2.3454 -1.1739 -9.3794 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884527658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:29 Heat of formation + Delta-G solvation = -1.465676 kcal Electronic energy + Delta-G solvation = -25299.911078 eV Core-core repulsion = 21599.184519 eV Total energy + Delta-G solvation = -3700.726558 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.11598 -39.36175 -37.72824 -36.82794 -35.08068 -33.02925 -32.34482 -31.80090 -30.10019 -28.94838 -26.27051 -26.16829 -24.92262 -24.15091 -23.28102 -22.00676 -21.21439 -19.14959 -18.42559 -17.76186 -16.81920 -16.51621 -16.12533 -15.43665 -15.27457 -15.00292 -14.80221 -14.29973 -13.97377 -13.82359 -13.65089 -13.37098 -12.89444 -12.76151 -12.52193 -12.16297 -12.02478 -11.70762 -11.50998 -11.45328 -11.41018 -11.24913 -11.15492 -10.79087 -10.72265 -10.71586 -10.57254 -10.16499 -9.99249 -9.83713 -9.71893 -9.49911 -9.28521 -8.68210 -8.33147 -7.96125 -6.37752 -4.23774 0.88059 1.34068 1.64417 3.09397 3.36444 3.37833 3.50194 3.56090 3.84089 4.01988 4.25708 4.41659 4.58220 4.61177 4.82693 4.88480 4.98262 5.12549 5.20898 5.32363 5.42400 5.48410 5.50513 5.60358 5.65230 5.71155 5.86704 5.90811 6.05727 6.09186 6.32817 6.45343 6.55920 6.62836 6.71799 6.77238 6.91784 6.96141 7.32681 7.35406 7.50471 7.71754 8.04101 8.23904 8.26369 8.70914 9.47417 10.88347 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.002883 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.896556 B = 9710.076129 C =10777.363734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 C -0.147 4.147 4 C -0.592 4.592 5 H 0.053 0.947 6 C 0.028 3.972 7 N -0.913 5.913 8 Si 1.064 2.936 9 H -0.288 1.288 10 H -0.287 1.287 11 H -0.282 1.282 12 C 0.136 3.864 13 N -0.687 5.687 14 C 0.455 3.545 15 C -0.278 4.278 16 C 0.250 3.750 17 Cl -0.026 7.026 18 N -0.549 5.549 19 C 0.366 3.634 20 C 0.155 3.845 21 H 0.111 0.889 22 C -0.141 4.141 23 C -0.153 4.153 24 C 0.052 3.948 25 O -0.361 6.361 26 N -0.575 5.575 27 H 0.074 0.926 28 H 0.018 0.982 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.017 0.983 32 H 0.072 0.928 33 H 0.281 0.719 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.410 0.590 37 H 0.153 0.847 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.526 -3.409 -19.991 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.045 3.955 3 C -0.205 4.205 4 C -0.630 4.630 5 H 0.071 0.929 6 C -0.176 4.176 7 N -0.552 5.552 8 Si 0.893 3.107 9 H -0.214 1.214 10 H -0.214 1.214 11 H -0.208 1.208 12 C 0.014 3.986 13 N -0.316 5.316 14 C 0.208 3.792 15 C -0.308 4.308 16 C 0.081 3.919 17 Cl 0.003 6.997 18 N -0.272 5.272 19 C 0.095 3.905 20 C 0.095 3.905 21 H 0.129 0.871 22 C -0.179 4.179 23 C -0.191 4.191 24 C -0.024 4.024 25 O -0.278 6.278 26 N -0.302 5.302 27 H 0.093 0.907 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.248 0.752 37 H 0.170 0.830 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.594 -3.085 -18.855 19.115 hybrid contribution 0.245 -0.522 -0.855 1.031 sum -0.349 -3.607 -19.710 20.040 Atomic orbital electron populations 1.22059 0.98020 0.99525 1.00971 1.18491 0.92486 0.92782 0.91770 1.22106 0.99360 0.98256 1.00736 1.21689 1.31159 1.18856 0.91300 0.92863 1.25681 0.94769 0.96270 1.00903 1.70881 1.35815 1.13803 1.34731 0.83602 0.76188 0.75252 0.75687 1.21430 1.21373 1.20769 1.21921 0.98227 0.95927 0.82553 1.45175 1.53139 1.31887 1.01378 1.18483 0.86721 0.87335 0.86649 1.21861 1.08660 1.02063 0.98216 1.21508 0.91515 0.89490 0.89347 1.98405 1.66607 1.37136 1.97567 1.67471 1.15687 1.10141 1.33931 1.22876 0.88367 0.87594 0.91662 1.21289 0.86783 0.98055 0.84354 0.87123 1.23114 0.98372 1.01550 0.94873 1.23270 0.96607 1.03209 0.95984 1.23407 0.93839 0.97737 0.87428 1.88495 1.42062 1.73580 1.23676 1.67661 1.29831 1.34750 0.97919 0.90706 0.96291 0.94335 0.94395 0.96416 0.90886 0.90225 0.92159 0.92070 0.75250 0.82961 0.89994 0.89265 0.90128 0.89656 0.89638 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 7.85 37.16 0.29 -2.85 16 2 C 0.05 0.99 0.50 -155.66 -0.08 0.91 16 3 C -0.15 -3.14 7.91 37.16 0.29 -2.85 16 4 C -0.59 -14.83 8.00 -34.44 -0.28 -15.10 16 5 H 0.05 1.33 7.76 -52.49 -0.41 0.92 16 6 C 0.03 0.74 5.07 -17.82 -0.09 0.65 16 7 N -0.91 -24.98 12.17 55.43 0.67 -24.30 16 8 Si 1.06 23.47 29.91 -169.99 -5.08 18.38 16 9 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.14 2.53 3.75 -4.04 -0.02 2.51 16 13 N -0.69 -11.60 5.19 -60.27 -0.31 -11.91 16 14 C 0.45 7.58 7.71 -154.77 -1.19 6.38 16 15 C -0.28 -4.36 9.20 -39.07 -0.36 -4.72 16 16 C 0.25 3.84 7.33 -17.17 -0.13 3.71 16 17 Cl -0.03 -0.34 29.15 -51.86 -1.51 -1.85 16 18 N -0.55 -8.64 10.13 -7.94 -0.08 -8.72 16 19 C 0.37 5.59 6.50 -157.25 -1.02 4.57 16 20 C 0.16 1.90 3.94 -27.16 -0.11 1.80 16 21 H 0.11 1.27 8.13 -51.93 -0.42 0.84 16 22 C -0.14 -1.32 6.53 -24.78 -0.16 -1.48 16 23 C -0.15 -1.11 7.16 -24.48 -0.18 -1.29 16 24 C 0.05 0.48 7.78 38.19 0.30 0.78 16 25 O -0.36 -4.67 10.83 -35.23 -0.38 -5.05 16 26 N -0.57 -9.39 10.36 -9.97 -0.10 -9.50 16 27 H 0.07 1.78 5.16 -51.93 -0.27 1.51 16 28 H 0.02 0.35 7.04 -51.93 -0.37 -0.02 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.02 0.33 7.05 -51.93 -0.37 -0.04 16 32 H 0.07 1.74 5.30 -51.93 -0.28 1.47 16 33 H 0.28 7.45 3.59 -40.82 -0.15 7.31 16 34 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 35 H 0.06 1.13 7.98 -51.93 -0.41 0.71 16 36 H 0.41 6.89 6.41 -40.82 -0.26 6.62 16 37 H 0.15 2.24 6.86 -52.49 -0.36 1.88 16 38 H 0.08 0.86 7.84 -51.93 -0.41 0.45 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -27.93 356.37 -10.01 -37.94 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.86 Total: 6.62 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -2.72 Total: -6.98 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.18 Total: -54.43 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.38 Total: -5.05 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.08 Total: 18.38 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.51 Total: -1.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.93 -10.01 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884527658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.474 kcal (2) G-P(sol) polarization free energy of solvation -27.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds