Wall clock time and date at job start Tue Mar 31 2020 14:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46893 * 2 1 4 4 C 1.50695 * 109.47274 * 120.00168 * 2 1 3 5 5 H 1.07996 * 120.00270 * 124.91871 * 4 2 1 6 6 C 1.37885 * 120.00036 * 304.91595 * 4 2 1 7 7 N 1.31513 * 119.99843 * 351.64004 * 6 4 2 8 8 Si 1.86792 * 120.00021 * 171.63580 * 6 4 2 9 9 H 1.48497 * 109.47377 * 60.00521 * 8 6 4 10 10 H 1.48502 * 109.47297 * 300.00058 * 8 6 4 11 11 H 1.48503 * 109.47208 * 180.02562 * 8 6 4 12 12 C 1.53002 * 109.47038 * 240.00065 * 2 1 3 13 13 N 1.46505 * 109.47090 * 59.99934 * 12 2 1 14 14 C 1.38554 * 119.99581 * 179.97438 * 13 12 2 15 15 C 1.39566 * 120.52683 * 359.72373 * 14 13 12 16 16 C 1.38278 * 118.32058 * 179.71167 * 15 14 13 17 17 Cl 1.73601 * 120.41439 * 180.26185 * 16 15 14 18 18 N 1.32686 * 119.16532 * 0.56116 * 16 15 14 19 19 C 1.31751 * 120.99101 * 359.72132 * 18 16 15 20 20 C 1.50710 * 119.07697 * 180.02562 * 19 18 16 21 21 H 1.09007 * 109.82313 * 195.54507 * 20 19 18 22 22 C 1.54378 * 109.83093 * 74.56742 * 20 19 18 23 23 C 1.55310 * 102.25269 * 219.13315 * 22 20 19 24 24 C 1.54949 * 100.94250 * 34.13047 * 23 22 20 25 25 O 1.43237 * 109.82930 * 316.43264 * 20 19 18 26 26 N 1.31765 * 121.84928 * 359.97438 * 19 18 16 27 27 H 1.08994 * 109.46965 * 292.91806 * 1 2 3 28 28 H 1.08999 * 109.46907 * 52.91689 * 1 2 3 29 29 H 1.09005 * 109.47016 * 172.92013 * 1 2 3 30 30 H 1.09002 * 109.47064 * 187.36056 * 3 2 1 31 31 H 1.09003 * 109.47312 * 307.35858 * 3 2 1 32 32 H 1.08994 * 109.47237 * 67.36013 * 3 2 1 33 33 H 0.97003 * 120.00052 * 5.71615 * 7 6 4 34 34 H 1.09001 * 109.46975 * 179.97438 * 12 2 1 35 35 H 1.09000 * 109.47315 * 299.99646 * 12 2 1 36 36 H 0.97000 * 119.99806 * 359.97438 * 13 12 2 37 37 H 1.07997 * 120.83325 * 0.02562 * 15 14 13 38 38 H 1.09004 * 110.84647 * 337.31381 * 22 20 19 39 39 H 1.08994 * 110.85227 * 100.93449 * 22 20 19 40 40 H 1.08998 * 111.12076 * 276.21180 * 23 22 20 41 41 H 1.08990 * 111.16157 * 152.06540 * 23 22 20 42 42 H 1.08999 * 110.30709 * 204.64391 * 24 23 22 43 43 H 1.08995 * 110.39514 * 82.51374 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.7171 -1.5399 1.1333 6 6 1.6178 -0.3014 2.4802 7 7 0.9188 0.8048 2.6117 8 14 2.0490 -1.3185 3.9865 9 1 3.5254 -1.4154 4.1123 10 1 1.4737 -2.6802 3.8455 11 1 1.4901 -0.6686 5.1992 12 6 2.0400 -0.7212 -1.2493 13 7 1.5516 -0.0306 -2.4455 14 6 1.8868 -0.5037 -3.7038 15 6 2.6937 -1.6338 -3.8446 16 6 2.9948 -2.0699 -5.1218 17 17 3.9881 -3.4736 -5.3598 18 7 2.5200 -1.3984 -6.1631 19 6 1.7655 -0.3314 -5.9955 20 6 1.2488 0.3982 -7.2087 21 1 0.8874 1.3854 -6.9204 22 6 0.1059 -0.4106 -7.8590 23 6 0.3842 -0.2148 -9.3743 24 6 1.9329 -0.1650 -9.3849 25 8 2.2941 0.5278 -8.1795 26 7 1.4491 0.1151 -4.7968 27 1 -0.3633 0.4002 0.9465 28 1 -0.3633 0.6197 -0.8198 29 1 -0.3633 -1.0199 -0.1267 30 1 3.1220 1.4454 -0.1317 31 1 1.5731 1.9930 -0.8168 32 1 1.7881 1.9169 0.9484 33 1 0.6239 1.2887 1.8245 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2493 36 1 0.9937 0.7578 -2.3564 37 1 3.0690 -2.1574 -2.9778 38 1 0.1716 -1.4637 -7.5855 39 1 -0.8653 0.0022 -7.5864 40 1 -0.0414 0.7219 -9.7340 41 1 0.0144 -1.0600 -9.9547 42 1 2.2878 0.3835 -10.2574 43 1 2.3454 -1.1739 -9.3794 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884527658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:28 Heat of formation + Delta-G solvation = -16.479579 kcal Electronic energy + Delta-G solvation = -25300.562129 eV Core-core repulsion = 21599.184519 eV Total energy + Delta-G solvation = -3701.377610 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.28879 -40.26974 -39.26720 -37.97459 -36.57163 -34.25830 -33.44425 -32.96345 -31.55625 -29.92970 -27.91419 -27.89857 -26.53197 -25.33763 -24.50158 -22.70309 -22.28724 -20.82011 -19.83528 -18.94608 -18.43344 -17.39394 -17.03708 -16.62084 -16.50877 -16.23478 -16.10410 -15.61537 -15.53495 -15.37587 -14.54137 -14.49931 -14.45654 -14.07812 -13.78770 -13.41968 -13.29115 -13.10643 -12.77915 -12.69430 -12.55695 -12.54288 -12.42727 -12.17887 -12.05168 -11.92220 -11.89130 -11.73785 -11.62020 -11.41326 -10.83393 -10.59032 -10.55467 -10.50286 -10.25209 -9.27821 -8.38262 -6.25109 -0.31139 0.09681 0.48794 1.58481 1.63458 1.81484 1.82988 2.43392 2.61611 2.75795 3.05950 3.25423 3.39211 3.54212 3.68960 3.90917 4.00163 4.05226 4.11875 4.22237 4.28273 4.35324 4.44431 4.49301 4.66933 4.78358 4.80484 4.83961 4.86516 4.90256 4.93614 4.94847 5.00322 5.16237 5.18152 5.25128 5.46609 5.59864 5.76283 5.95141 6.00746 6.14032 6.32534 6.41674 6.73944 7.01219 7.52353 8.89413 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.002883 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.896556 B = 9710.076129 C =10777.363734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.039 3.961 3 C -0.137 4.137 4 C -0.601 4.601 5 H 0.050 0.950 6 C -0.016 4.016 7 N -0.941 5.941 8 Si 1.102 2.898 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.291 1.291 12 C 0.153 3.847 13 N -0.686 5.686 14 C 0.446 3.554 15 C -0.284 4.284 16 C 0.244 3.756 17 Cl -0.006 7.006 18 N -0.556 5.556 19 C 0.358 3.642 20 C 0.151 3.849 21 H 0.117 0.883 22 C -0.137 4.137 23 C -0.140 4.140 24 C 0.043 3.957 25 O -0.385 6.385 26 N -0.583 5.583 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.278 0.722 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.410 0.590 37 H 0.160 0.840 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 -4.022 -21.836 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.038 3.962 3 C -0.195 4.195 4 C -0.639 4.639 5 H 0.068 0.932 6 C -0.216 4.216 7 N -0.582 5.582 8 Si 0.927 3.073 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.217 1.217 12 C 0.030 3.970 13 N -0.316 5.316 14 C 0.200 3.800 15 C -0.314 4.314 16 C 0.075 3.925 17 Cl 0.022 6.978 18 N -0.279 5.279 19 C 0.088 3.912 20 C 0.091 3.909 21 H 0.135 0.865 22 C -0.175 4.175 23 C -0.177 4.177 24 C -0.032 4.032 25 O -0.303 6.303 26 N -0.310 5.310 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.248 0.752 37 H 0.177 0.823 38 H 0.086 0.914 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.766 -3.710 -20.744 21.087 hybrid contribution 0.349 -0.354 -0.399 0.638 sum -0.416 -4.064 -21.143 21.534 Atomic orbital electron populations 1.21917 0.97681 0.99651 1.00373 1.18485 0.92723 0.92850 0.92143 1.21962 0.99233 0.98234 1.00103 1.22051 1.30589 1.18647 0.92655 0.93210 1.26745 0.94635 0.96550 1.03656 1.70935 1.37406 1.14948 1.34910 0.83096 0.76649 0.74658 0.72942 1.20187 1.19944 1.21651 1.21546 0.97961 0.95559 0.81929 1.44905 1.53635 1.31970 1.01093 1.18585 0.87108 0.87758 0.86576 1.21953 1.08722 1.02007 0.98708 1.21735 0.91484 0.89966 0.89292 1.98408 1.65920 1.35935 1.97505 1.67582 1.15844 1.10402 1.34031 1.23584 0.87799 0.87518 0.92283 1.21501 0.87431 0.98436 0.83573 0.86547 1.23119 0.98003 1.00263 0.96150 1.23264 0.94974 1.04919 0.94574 1.23623 0.95501 0.97330 0.86774 1.88470 1.42942 1.74049 1.24855 1.67700 1.30174 1.34965 0.98178 0.93351 0.94001 0.94482 0.94748 0.94160 0.93544 0.90585 0.92272 0.91923 0.75222 0.82265 0.91370 0.87625 0.88409 0.87807 0.87704 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.82 7.85 71.98 0.57 -5.26 16 2 C 0.04 1.66 0.50 -52.93 -0.03 1.64 16 3 C -0.14 -5.85 7.91 71.98 0.57 -5.28 16 4 C -0.60 -30.04 8.00 25.60 0.20 -29.83 16 5 H 0.05 2.46 7.76 -2.91 -0.02 2.44 16 6 C -0.02 -0.83 5.07 84.66 0.43 -0.40 16 7 N -0.94 -52.24 12.17 21.45 0.26 -51.98 16 8 Si 1.10 47.21 29.91 68.60 2.05 49.26 16 9 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 12 C 0.15 5.54 3.75 86.38 0.32 5.87 16 13 N -0.69 -22.42 5.19 -344.60 -1.79 -24.20 16 14 C 0.45 14.41 7.71 133.14 1.03 15.44 16 15 C -0.28 -8.64 9.20 22.60 0.21 -8.43 16 16 C 0.24 7.24 7.33 84.57 0.62 7.86 16 17 Cl -0.01 -0.16 29.15 -2.72 -0.08 -0.24 16 18 N -0.56 -16.96 10.13 -179.02 -1.81 -18.78 16 19 C 0.36 10.62 6.50 138.77 0.90 11.52 16 20 C 0.15 3.49 3.94 30.32 0.12 3.61 16 21 H 0.12 2.51 8.13 -2.38 -0.02 2.49 16 22 C -0.14 -2.29 6.53 31.86 0.21 -2.08 16 23 C -0.14 -1.63 7.16 32.05 0.23 -1.40 16 24 C 0.04 0.72 7.78 72.65 0.57 1.28 16 25 O -0.39 -9.48 10.83 -148.98 -1.61 -11.10 16 26 N -0.58 -18.51 10.36 -185.47 -1.92 -20.43 16 27 H 0.05 2.31 5.16 -2.39 -0.01 2.30 16 28 H 0.04 1.52 7.04 -2.39 -0.02 1.51 16 29 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 1.49 7.05 -2.39 -0.02 1.47 16 32 H 0.05 2.24 5.30 -2.39 -0.01 2.22 16 33 H 0.28 15.06 3.59 -92.71 -0.33 14.73 16 34 H 0.06 2.15 7.96 -2.39 -0.02 2.13 16 35 H 0.06 2.24 7.98 -2.39 -0.02 2.22 16 36 H 0.41 13.24 6.41 -92.71 -0.59 12.64 16 37 H 0.16 4.52 6.86 -2.91 -0.02 4.50 16 38 H 0.07 1.33 7.84 -2.39 -0.02 1.31 16 39 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -59.49 356.37 1.92 -57.57 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.88 Total: 25.37 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 5.94 Total: -5.48 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -5.26 Total: -115.39 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -1.61 Total: -11.10 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.05 Total: 49.26 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -59.49 1.92 -57.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884527658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.093 kcal (2) G-P(sol) polarization free energy of solvation -59.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds