Wall clock time and date at job start Tue Mar 31 2020 14:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49697 * 2 1 4 4 C 1.53188 * 109.52830 * 120.08110 * 2 1 3 5 5 N 1.46928 * 108.77791 * 174.60423 * 4 2 1 6 6 C 1.36941 * 120.62892 * 126.36693 * 5 4 2 7 7 H 1.07995 * 120.00109 * 328.19010 * 6 5 4 8 8 C 1.38818 * 119.99599 * 148.18755 * 6 5 4 9 9 N 1.31616 * 119.99749 * 167.43366 * 8 6 5 10 10 Si 1.86795 * 120.00065 * 347.43706 * 8 6 5 11 11 H 1.48506 * 109.47236 * 85.82313 * 10 8 6 12 12 H 1.48501 * 109.47281 * 205.82262 * 10 8 6 13 13 H 1.48498 * 109.47292 * 325.82281 * 10 8 6 14 14 C 1.46921 * 118.74006 * 306.39095 * 5 4 2 15 15 C 1.53186 * 108.77455 * 53.60498 * 14 5 4 16 16 C 1.53038 * 109.31602 * 305.36599 * 15 14 5 17 17 H 1.09003 * 109.45855 * 181.38276 * 16 15 14 18 18 N 1.46498 * 109.45144 * 301.35164 * 16 15 14 19 19 C 1.34777 * 119.99999 * 275.06148 * 18 16 15 20 20 O 1.21696 * 120.00103 * 354.75546 * 19 18 16 21 21 C 1.46664 * 119.99939 * 174.75719 * 19 18 16 22 22 C 1.37896 * 126.22558 * 4.87947 * 21 19 18 23 23 C 1.39888 * 107.09895 * 179.90593 * 22 21 19 24 24 Cl 1.73592 * 126.07850 * 180.17016 * 23 22 21 25 25 C 1.35522 * 107.84654 * 0.35831 * 23 22 21 26 26 N 1.35624 * 108.85669 * 359.77830 * 25 23 22 27 27 C 1.46495 * 125.68008 * 179.97438 * 26 25 23 28 28 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46910 * 299.99634 * 1 2 3 30 30 H 1.08991 * 109.47173 * 60.00392 * 1 2 3 31 31 H 1.09001 * 109.58621 * 294.39148 * 4 2 1 32 32 H 1.08997 * 109.58930 * 54.81416 * 4 2 1 33 33 H 0.97001 * 120.00064 * 180.02562 * 9 8 6 34 34 H 1.09009 * 109.58564 * 293.82308 * 14 5 4 35 35 H 1.08996 * 109.70910 * 173.46564 * 14 5 4 36 36 H 1.09008 * 109.50059 * 185.41436 * 15 14 5 37 37 H 1.09000 * 109.49448 * 65.32066 * 15 14 5 38 38 H 0.96994 * 119.99850 * 95.06132 * 18 16 15 39 39 H 1.08000 * 126.44766 * 0.03796 * 22 21 19 40 40 H 1.08006 * 125.56915 * 179.77345 * 25 23 22 41 41 H 1.09005 * 109.47144 * 271.58308 * 27 26 25 42 42 H 1.08993 * 109.47128 * 31.58582 * 27 26 25 43 43 H 1.09003 * 109.47333 * 151.58279 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0421 -0.7236 1.2493 5 7 3.5054 -0.8282 1.1689 6 6 4.2944 -0.3772 2.1932 7 1 3.9770 0.4662 2.7883 8 6 5.5023 -1.0043 2.4667 9 7 6.3716 -0.4345 3.2741 10 14 5.8940 -2.6567 1.6886 11 1 6.4921 -2.4426 0.3463 12 1 6.8563 -3.3927 2.5475 13 1 4.6451 -3.4487 1.5534 14 6 4.1060 -1.4254 -0.0316 15 6 3.5709 -0.6939 -1.2666 16 6 2.0409 -0.7228 -1.2486 17 1 1.6577 -0.2243 -2.1390 18 7 1.5793 -2.1130 -1.2308 19 6 1.4512 -2.7953 -2.3861 20 8 1.6264 -2.2299 -3.4493 21 6 1.1007 -4.2193 -2.3617 22 6 0.7827 -4.9612 -1.2437 23 6 0.5154 -6.2641 -1.6771 24 17 0.0601 -7.6031 -0.6705 25 6 0.6792 -6.2963 -3.0220 26 7 1.0350 -5.0595 -3.4500 27 6 1.3050 -4.6809 -4.8391 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.7645 -0.1580 2.1388 32 1 1.6065 -1.7216 1.2978 33 1 7.2158 -0.8725 3.4649 34 1 3.8388 -2.4807 -0.0876 35 1 5.1905 -1.3249 0.0111 36 1 3.9334 -1.1883 -2.1679 37 1 3.9154 0.3401 -1.2547 38 1 1.3659 -2.5425 -0.3877 39 1 0.7449 -4.6032 -0.2255 40 1 0.5479 -7.1650 -3.6503 41 1 2.3571 -4.8546 -5.0652 42 1 0.6861 -5.2810 -5.5061 43 1 1.0727 -3.6252 -4.9798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942404655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:52 Heat of formation + Delta-G solvation = 30.725973 kcal Electronic energy + Delta-G solvation = -26404.008623 eV Core-core repulsion = 22704.677999 eV Total energy + Delta-G solvation = -3699.330624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.67015 -39.76630 -37.75579 -36.53508 -34.54929 -33.25001 -32.42701 -31.62299 -30.67534 -29.13833 -26.70248 -26.39630 -25.29566 -23.23447 -21.85488 -21.56524 -20.88853 -19.89006 -18.90147 -18.17357 -16.78705 -16.23079 -15.95151 -15.50794 -15.17061 -14.83682 -14.48114 -14.25440 -14.03813 -13.80910 -13.54828 -13.51204 -13.44636 -13.16050 -13.03587 -12.59060 -12.42373 -12.27634 -11.80048 -11.67820 -11.58848 -11.52998 -11.33932 -11.01136 -10.69290 -10.56598 -10.22278 -9.99051 -9.93493 -9.65335 -9.52622 -8.97306 -8.87061 -8.61400 -8.39848 -6.94076 -5.95700 -3.39799 1.24801 1.93378 2.25567 2.61845 3.28510 3.29950 3.43827 3.46372 3.48200 4.49960 4.55224 4.63741 4.68051 4.90801 4.97294 4.99675 5.04356 5.21748 5.29700 5.31482 5.40621 5.43696 5.64361 5.73425 5.81833 5.84942 5.94507 6.00249 6.12414 6.21797 6.23771 6.32605 6.36173 6.54071 6.57885 6.60275 6.65039 6.70075 6.79749 6.88381 7.58476 7.97770 8.21260 8.32192 8.91039 9.68940 10.06921 11.20294 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.011897 B = 0.004363 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.051876 B = 6415.519712 C = 7330.847544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 H 0.088 0.912 4 C 0.154 3.846 5 N -0.606 5.606 6 C -0.262 4.262 7 H 0.085 0.915 8 C 0.026 3.974 9 N -0.913 5.913 10 Si 0.894 3.106 11 H -0.288 1.288 12 H -0.305 1.305 13 H -0.271 1.271 14 C 0.122 3.878 15 C -0.146 4.146 16 C 0.161 3.839 17 H 0.082 0.918 18 N -0.700 5.700 19 C 0.590 3.410 20 O -0.553 6.553 21 C -0.032 4.032 22 C -0.129 4.129 23 C -0.121 4.121 24 Cl -0.051 7.051 25 C 0.028 3.972 26 N -0.403 5.403 27 C 0.064 3.936 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.018 0.982 33 H 0.263 0.737 34 H 0.026 0.974 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.404 0.596 39 H 0.154 0.846 40 H 0.177 0.823 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.237 -9.560 -13.944 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 H 0.106 0.894 4 C 0.028 3.972 5 N -0.329 5.329 6 C -0.390 4.390 7 H 0.103 0.897 8 C -0.173 4.173 9 N -0.556 5.556 10 Si 0.725 3.275 11 H -0.216 1.216 12 H -0.233 1.233 13 H -0.196 1.196 14 C -0.004 4.004 15 C -0.186 4.186 16 C 0.057 3.943 17 H 0.100 0.900 18 N -0.351 5.351 19 C 0.377 3.623 20 O -0.433 6.433 21 C -0.146 4.146 22 C -0.155 4.155 23 C -0.154 4.154 24 Cl -0.022 7.022 25 C -0.109 4.109 26 N -0.076 5.076 27 C -0.076 4.076 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.240 0.760 39 H 0.171 0.829 40 H 0.194 0.806 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.873 -9.119 -14.851 22.275 hybrid contribution 0.329 -1.442 0.074 1.481 sum -13.544 -10.561 -14.777 22.656 Atomic orbital electron populations 1.21764 0.95306 1.01517 1.01448 1.21960 0.94988 1.01021 0.96085 0.89377 1.20955 0.84526 0.96525 0.95195 1.44322 1.00589 1.72092 1.15928 1.18908 1.00827 1.10709 1.08560 0.89706 1.25366 0.97202 0.97815 0.96950 1.69757 1.08410 1.38812 1.38647 0.86883 0.77663 0.85719 0.77202 1.21642 1.23343 1.19597 1.21409 0.98244 0.94722 0.86007 1.22400 0.94594 1.02400 0.99218 1.20969 0.94467 0.79997 0.98821 0.89955 1.45842 1.66557 1.14351 1.08321 1.16825 0.76973 0.83980 0.84555 1.90745 1.52677 1.70045 1.29871 1.20132 1.15128 0.92726 0.86607 1.21272 1.04373 0.91744 0.98124 1.19883 1.13986 0.90393 0.91095 1.98327 1.91448 1.44353 1.68088 1.21684 1.06284 0.88649 0.94294 1.43764 1.48983 1.07374 1.07480 1.22391 1.02731 1.04887 0.77629 0.92988 0.92405 0.93083 0.91325 0.96377 0.92701 0.95657 0.90854 0.92403 0.90556 0.75958 0.82882 0.80569 0.90297 0.89766 0.87090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.06 37.16 0.34 -1.36 16 2 C -0.12 -1.77 2.67 -90.50 -0.24 -2.02 16 3 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 4 C 0.15 2.76 5.50 -3.71 -0.02 2.74 16 5 N -0.61 -13.62 2.75 -172.33 -0.47 -14.10 16 6 C -0.26 -7.10 10.06 -15.06 -0.15 -7.25 16 7 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 8 C 0.03 0.73 5.35 -17.43 -0.09 0.64 16 9 N -0.91 -27.80 13.97 55.49 0.78 -27.03 16 10 Si 0.89 22.59 24.24 -169.99 -4.12 18.47 16 11 H -0.29 -7.11 6.40 56.52 0.36 -6.75 16 12 H -0.31 -7.88 7.11 56.52 0.40 -7.48 16 13 H -0.27 -6.67 6.59 56.52 0.37 -6.30 16 14 C 0.12 2.59 3.89 -3.72 -0.01 2.58 16 15 C -0.15 -2.60 5.77 -26.62 -0.15 -2.75 16 16 C 0.16 2.47 2.26 -67.89 -0.15 2.32 16 17 H 0.08 1.26 7.51 -51.93 -0.39 0.87 16 18 N -0.70 -10.14 3.58 -55.08 -0.20 -10.34 16 19 C 0.59 8.79 7.74 -12.86 -0.10 8.69 16 20 O -0.55 -9.21 14.24 5.19 0.07 -9.13 16 21 C -0.03 -0.43 6.88 -81.98 -0.56 -0.99 16 22 C -0.13 -1.63 10.35 -39.09 -0.40 -2.03 16 23 C -0.12 -1.41 6.66 -39.93 -0.27 -1.67 16 24 Cl -0.05 -0.55 29.30 -51.86 -1.52 -2.07 16 25 C 0.03 0.28 11.36 -16.85 -0.19 0.09 16 26 N -0.40 -4.54 3.16 -120.19 -0.38 -4.92 16 27 C 0.06 0.55 10.68 59.84 0.64 1.19 16 28 H 0.05 0.59 7.54 -51.93 -0.39 0.20 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 32 H 0.02 0.31 6.64 -51.93 -0.34 -0.04 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.03 0.55 6.52 -51.92 -0.34 0.21 16 35 H 0.07 1.75 4.36 -51.93 -0.23 1.53 16 36 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.40 5.57 5.63 -40.82 -0.23 5.34 16 39 H 0.15 1.78 7.45 -52.49 -0.39 1.39 16 40 H 0.18 1.18 8.06 -52.48 -0.42 0.76 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.11 1.15 6.13 -51.93 -0.32 0.83 16 LS Contribution 350.70 15.07 5.28 5.28 Total: -1.00 -31.83 350.70 -7.98 -39.81 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.05 Total: 3.87 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -1.38 Total: 0.16 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.28 Total: -56.39 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.13 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.12 Total: 18.47 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.52 Total: -2.07 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.83 -7.98 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942404655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.536 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds