Wall clock time and date at job start Tue Mar 31 2020 14:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49697 * 2 1 4 4 C 1.53188 * 109.52830 * 120.08110 * 2 1 3 5 5 N 1.46928 * 108.77791 * 174.60423 * 4 2 1 6 6 C 1.36941 * 120.62892 * 126.36693 * 5 4 2 7 7 H 1.07995 * 120.00109 * 328.19010 * 6 5 4 8 8 C 1.38818 * 119.99599 * 148.18755 * 6 5 4 9 9 N 1.31616 * 119.99749 * 167.43366 * 8 6 5 10 10 Si 1.86795 * 120.00065 * 347.43706 * 8 6 5 11 11 H 1.48506 * 109.47236 * 85.82313 * 10 8 6 12 12 H 1.48501 * 109.47281 * 205.82262 * 10 8 6 13 13 H 1.48498 * 109.47292 * 325.82281 * 10 8 6 14 14 C 1.46921 * 118.74006 * 306.39095 * 5 4 2 15 15 C 1.53186 * 108.77455 * 53.60498 * 14 5 4 16 16 C 1.53038 * 109.31602 * 305.36599 * 15 14 5 17 17 H 1.09003 * 109.45855 * 181.38276 * 16 15 14 18 18 N 1.46498 * 109.45144 * 301.35164 * 16 15 14 19 19 C 1.34777 * 119.99999 * 275.06148 * 18 16 15 20 20 O 1.21696 * 120.00103 * 354.75546 * 19 18 16 21 21 C 1.46664 * 119.99939 * 174.75719 * 19 18 16 22 22 C 1.37896 * 126.22558 * 4.87947 * 21 19 18 23 23 C 1.39888 * 107.09895 * 179.90593 * 22 21 19 24 24 Cl 1.73592 * 126.07850 * 180.17016 * 23 22 21 25 25 C 1.35522 * 107.84654 * 0.35831 * 23 22 21 26 26 N 1.35624 * 108.85669 * 359.77830 * 25 23 22 27 27 C 1.46495 * 125.68008 * 179.97438 * 26 25 23 28 28 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46910 * 299.99634 * 1 2 3 30 30 H 1.08991 * 109.47173 * 60.00392 * 1 2 3 31 31 H 1.09001 * 109.58621 * 294.39148 * 4 2 1 32 32 H 1.08997 * 109.58930 * 54.81416 * 4 2 1 33 33 H 0.97001 * 120.00064 * 180.02562 * 9 8 6 34 34 H 1.09009 * 109.58564 * 293.82308 * 14 5 4 35 35 H 1.08996 * 109.70910 * 173.46564 * 14 5 4 36 36 H 1.09008 * 109.50059 * 185.41436 * 15 14 5 37 37 H 1.09000 * 109.49448 * 65.32066 * 15 14 5 38 38 H 0.96994 * 119.99850 * 95.06132 * 18 16 15 39 39 H 1.08000 * 126.44766 * 0.03796 * 22 21 19 40 40 H 1.08006 * 125.56915 * 179.77345 * 25 23 22 41 41 H 1.09005 * 109.47144 * 271.58308 * 27 26 25 42 42 H 1.08993 * 109.47128 * 31.58582 * 27 26 25 43 43 H 1.09003 * 109.47333 * 151.58279 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0421 -0.7236 1.2493 5 7 3.5054 -0.8282 1.1689 6 6 4.2944 -0.3772 2.1932 7 1 3.9770 0.4662 2.7883 8 6 5.5023 -1.0043 2.4667 9 7 6.3716 -0.4345 3.2741 10 14 5.8940 -2.6567 1.6886 11 1 6.4921 -2.4426 0.3463 12 1 6.8563 -3.3927 2.5475 13 1 4.6451 -3.4487 1.5534 14 6 4.1060 -1.4254 -0.0316 15 6 3.5709 -0.6939 -1.2666 16 6 2.0409 -0.7228 -1.2486 17 1 1.6577 -0.2243 -2.1390 18 7 1.5793 -2.1130 -1.2308 19 6 1.4512 -2.7953 -2.3861 20 8 1.6264 -2.2299 -3.4493 21 6 1.1007 -4.2193 -2.3617 22 6 0.7827 -4.9612 -1.2437 23 6 0.5154 -6.2641 -1.6771 24 17 0.0601 -7.6031 -0.6705 25 6 0.6792 -6.2963 -3.0220 26 7 1.0350 -5.0595 -3.4500 27 6 1.3050 -4.6809 -4.8391 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.7645 -0.1580 2.1388 32 1 1.6065 -1.7216 1.2978 33 1 7.2158 -0.8725 3.4649 34 1 3.8388 -2.4807 -0.0876 35 1 5.1905 -1.3249 0.0111 36 1 3.9334 -1.1883 -2.1679 37 1 3.9154 0.3401 -1.2547 38 1 1.3659 -2.5425 -0.3877 39 1 0.7449 -4.6032 -0.2255 40 1 0.5479 -7.1650 -3.6503 41 1 2.3571 -4.8546 -5.0652 42 1 0.6861 -5.2810 -5.5061 43 1 1.0727 -3.6252 -4.9798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942404655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:52 Heat of formation + Delta-G solvation = 11.208782 kcal Electronic energy + Delta-G solvation = -26404.854952 eV Core-core repulsion = 22704.677999 eV Total energy + Delta-G solvation = -3700.176953 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.55965 -40.99853 -39.09353 -37.36917 -36.13152 -34.38694 -33.51613 -33.40122 -32.16409 -30.17257 -27.78558 -27.43853 -26.98223 -24.43285 -23.39600 -23.06536 -21.78107 -20.88539 -20.26032 -19.16354 -18.68426 -17.48263 -17.04924 -16.83920 -16.50105 -16.12918 -15.81415 -15.42855 -15.25027 -15.06348 -14.92265 -14.80672 -14.54257 -14.21357 -14.00138 -13.84506 -13.78040 -13.50427 -13.22805 -13.13112 -12.94523 -12.79509 -12.41665 -12.23556 -12.09752 -11.93382 -11.84561 -11.65446 -11.43792 -11.25559 -11.05802 -10.73958 -10.12219 -9.74637 -9.28111 -8.85050 -8.16130 -5.54916 0.30763 1.12153 1.27420 1.38156 1.40560 1.46301 1.70509 2.23789 2.39356 2.43349 3.09751 3.30093 3.59857 3.75671 3.87901 3.93538 4.00652 4.07906 4.22043 4.22302 4.37645 4.41395 4.52131 4.54903 4.57730 4.72448 4.74411 4.85762 4.87549 4.93006 4.94831 5.03056 5.15441 5.21733 5.30983 5.33430 5.45279 5.56902 5.68064 5.90057 6.02846 6.14858 6.46441 6.92127 7.09517 7.61036 8.02951 9.03793 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.011897 B = 0.004363 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.051876 B = 6415.519712 C = 7330.847544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 H 0.080 0.920 4 C 0.149 3.851 5 N -0.617 5.617 6 C -0.243 4.243 7 H 0.056 0.944 8 C -0.031 4.031 9 N -0.961 5.961 10 Si 0.950 3.050 11 H -0.281 1.281 12 H -0.314 1.314 13 H -0.258 1.258 14 C 0.123 3.877 15 C -0.138 4.138 16 C 0.170 3.830 17 H 0.090 0.910 18 N -0.698 5.698 19 C 0.591 3.409 20 O -0.575 6.575 21 C -0.061 4.061 22 C -0.131 4.131 23 C -0.142 4.142 24 Cl -0.048 7.048 25 C 0.050 3.950 26 N -0.405 5.405 27 C 0.061 3.939 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.261 0.739 34 H 0.030 0.970 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.407 0.593 39 H 0.156 0.844 40 H 0.214 0.786 41 H 0.083 0.917 42 H 0.120 0.880 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.324 -11.433 -16.037 25.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.128 4.128 3 H 0.099 0.901 4 C 0.025 3.975 5 N -0.341 5.341 6 C -0.373 4.373 7 H 0.073 0.927 8 C -0.226 4.226 9 N -0.608 5.608 10 Si 0.781 3.219 11 H -0.209 1.209 12 H -0.244 1.244 13 H -0.183 1.183 14 C -0.002 4.002 15 C -0.178 4.178 16 C 0.065 3.935 17 H 0.108 0.892 18 N -0.349 5.349 19 C 0.379 3.621 20 O -0.457 6.457 21 C -0.174 4.174 22 C -0.158 4.158 23 C -0.175 4.175 24 Cl -0.020 7.020 25 C -0.088 4.088 26 N -0.077 5.077 27 C -0.078 4.078 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.245 0.755 39 H 0.174 0.826 40 H 0.230 0.770 41 H 0.102 0.898 42 H 0.138 0.862 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.013 -10.993 -16.976 25.796 hybrid contribution 0.900 -0.845 0.697 1.418 sum -15.113 -11.838 -16.279 25.170 Atomic orbital electron populations 1.21697 0.92535 1.02422 1.02551 1.21807 0.97110 0.99915 0.94009 0.90135 1.21166 0.81748 0.97919 0.96687 1.44415 1.02274 1.72099 1.15358 1.18870 1.00850 1.09146 1.08460 0.92671 1.25956 0.97516 1.00919 0.98208 1.69891 1.09109 1.40405 1.41387 0.85945 0.77619 0.81932 0.76422 1.20860 1.24361 1.18254 1.21335 0.96695 0.95282 0.86913 1.22290 0.96576 1.01572 0.97390 1.20818 0.92520 0.80839 0.99287 0.89209 1.45757 1.66589 1.13937 1.08603 1.17028 0.76322 0.84633 0.84102 1.90735 1.53729 1.70681 1.30515 1.19942 1.17443 0.92266 0.87795 1.21429 1.03843 0.92321 0.98236 1.20029 1.15200 0.90275 0.91974 1.98327 1.91471 1.43991 1.68165 1.22272 1.03401 0.88981 0.94186 1.44018 1.48364 1.07427 1.07930 1.22538 1.03855 1.04471 0.76950 0.92177 0.91441 0.91901 0.91915 0.94385 0.93038 0.95220 0.93644 0.92106 0.90976 0.75527 0.82613 0.76964 0.89830 0.86156 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.06 71.98 0.65 -2.17 16 2 C -0.11 -2.99 2.67 -10.72 -0.03 -3.02 16 3 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 4 C 0.15 5.15 5.50 86.36 0.48 5.62 16 5 N -0.62 -27.51 2.75 -699.11 -1.92 -29.43 16 6 C -0.24 -13.46 10.06 84.03 0.85 -12.62 16 7 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 8 C -0.03 -1.82 5.35 84.86 0.45 -1.37 16 9 N -0.96 -60.45 13.97 21.65 0.30 -60.15 16 10 Si 0.95 47.29 24.24 68.60 1.66 48.95 16 11 H -0.28 -13.52 6.40 99.48 0.64 -12.88 16 12 H -0.31 -16.00 7.11 99.48 0.71 -15.29 16 13 H -0.26 -12.13 6.59 99.48 0.66 -11.48 16 14 C 0.12 5.13 3.89 86.36 0.34 5.46 16 15 C -0.14 -4.77 5.77 30.67 0.18 -4.60 16 16 C 0.17 4.89 2.26 45.02 0.10 4.99 16 17 H 0.09 2.54 7.51 -2.39 -0.02 2.53 16 18 N -0.70 -18.82 3.58 -446.38 -1.60 -20.42 16 19 C 0.59 16.56 7.74 86.44 0.67 17.23 16 20 O -0.57 -18.28 14.24 -4.33 -0.06 -18.35 16 21 C -0.06 -1.50 6.88 40.35 0.28 -1.22 16 22 C -0.13 -3.05 10.35 22.59 0.23 -2.82 16 23 C -0.14 -2.95 6.66 22.04 0.15 -2.80 16 24 Cl -0.05 -0.94 29.30 -2.72 -0.08 -1.02 16 25 C 0.05 0.82 11.36 83.48 0.95 1.77 16 26 N -0.41 -7.98 3.16 -534.17 -1.69 -9.67 16 27 C 0.06 0.89 10.68 127.77 1.36 2.26 16 28 H 0.06 1.18 7.54 -2.39 -0.02 1.16 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 32 H 0.04 1.19 6.64 -2.39 -0.02 1.17 16 33 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 34 H 0.03 1.23 6.52 -2.38 -0.02 1.21 16 35 H 0.05 2.16 4.36 -2.39 -0.01 2.15 16 36 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.41 10.33 5.63 -92.71 -0.52 9.81 16 39 H 0.16 3.35 7.45 -2.91 -0.02 3.33 16 40 H 0.21 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.09 1.75 6.13 -2.39 -0.01 1.73 16 Total: -1.00 -70.00 350.70 3.66 -66.34 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.39 Total: 17.03 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 6.65 Total: 6.72 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -4.91 Total: -119.68 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.06 Total: -18.35 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.66 Total: 48.95 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -70.00 3.66 -66.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942404655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.548 kcal (2) G-P(sol) polarization free energy of solvation -69.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds