Wall clock time and date at job start Tue Mar 31 2020 14:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48500 * 109.47159 * 270.00209 * 3 2 1 5 5 H 1.48504 * 109.47042 * 29.99872 * 3 2 1 6 6 H 1.48496 * 109.47416 * 150.00190 * 3 2 1 7 7 C 1.38813 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99947 * 190.12296 * 7 2 1 9 9 N 1.36941 * 120.00001 * 10.12108 * 7 2 1 10 10 C 1.43459 * 118.94241 * 208.58222 * 9 7 2 11 11 C 1.53789 * 107.96664 * 273.63393 * 10 9 7 12 12 C 1.47148 * 111.83917 * 281.67324 * 11 10 9 13 13 N 1.48208 * 110.34349 * 58.29391 * 12 11 10 14 14 C 1.34780 * 119.97194 * 102.46751 * 13 12 11 15 15 O 1.21551 * 119.99783 * 4.43584 * 14 13 12 16 16 C 1.47836 * 119.99740 * 184.43336 * 14 13 12 17 17 C 1.40026 * 120.55942 * 301.26713 * 16 14 13 18 18 C 1.38352 * 118.28644 * 180.02562 * 17 16 14 19 19 C 1.38352 * 119.30840 * 0.02562 * 18 17 16 20 20 N 1.31925 * 121.07707 * 0.02562 * 19 18 17 21 21 C 1.31696 * 121.88130 * 359.97438 * 20 19 18 22 22 C 1.50695 * 119.72200 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.47033 * 20.95475 * 22 21 20 24 24 F 1.39894 * 109.47531 * 140.95449 * 22 21 20 25 25 C 1.43621 * 120.05594 * 282.74241 * 13 12 11 26 26 C 1.48858 * 118.93640 * 28.56405 * 9 7 2 27 27 H 0.96996 * 120.00613 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.76124 * 154.01228 * 10 9 7 29 29 H 1.09005 * 109.80072 * 33.26948 * 10 9 7 30 30 H 1.08997 * 109.00987 * 161.06428 * 11 10 9 31 31 H 1.09004 * 108.94794 * 42.23433 * 11 10 9 32 32 H 1.09008 * 109.31953 * 298.02695 * 12 11 10 33 33 H 1.08998 * 109.18307 * 178.47400 * 12 11 10 34 34 H 1.08002 * 120.85754 * 0.05317 * 17 16 14 35 35 H 1.08005 * 120.34793 * 180.27579 * 18 17 16 36 36 H 1.07996 * 119.46669 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.47356 * 260.96045 * 22 21 20 38 38 H 1.08998 * 108.87357 * 211.19634 * 25 13 12 39 39 H 1.09001 * 108.87478 * 329.63195 * 25 13 12 40 40 H 1.08996 * 109.48316 * 260.60080 * 26 9 7 41 41 H 1.09001 * 109.48452 * 20.63948 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0777 -1.2094 0.1638 9 7 1.3416 -2.3788 -0.2095 10 6 1.8585 -3.5838 0.3725 11 6 2.8950 -4.1731 -0.5989 12 6 2.2550 -4.8776 -1.7211 13 7 1.3602 -3.9584 -2.4635 14 6 1.7599 -3.4327 -3.6384 15 8 2.8185 -3.7743 -4.1283 16 6 0.9106 -2.4405 -4.3312 17 6 -0.3989 -2.7635 -4.7077 18 6 -1.1519 -1.7995 -5.3540 19 6 -0.5925 -0.5594 -5.6059 20 7 0.6447 -0.2835 -5.2403 21 6 1.4010 -1.1673 -4.6228 22 6 2.8082 -0.8003 -4.2276 23 9 2.9282 0.5923 -4.1697 24 9 3.0974 -1.3458 -2.9723 25 6 0.0701 -3.6229 -1.9291 26 6 0.1015 -2.3661 -1.0328 27 1 -0.4851 0.8400 -0.0004 28 1 1.0483 -4.2969 0.5241 29 1 2.3345 -3.3584 1.3269 30 1 3.5317 -4.8727 -0.0574 31 1 3.5110 -3.3645 -0.9926 32 1 1.6729 -5.7151 -1.3362 33 1 3.0254 -5.2531 -2.3945 34 1 -0.8106 -3.7398 -4.4985 35 1 -2.1672 -2.0114 -5.6553 36 1 -1.1781 0.1951 -6.1099 37 1 3.5073 -1.1948 -4.9651 38 1 -0.6181 -3.4440 -2.7552 39 1 -0.2981 -4.4642 -1.3419 40 1 -0.7697 -2.3629 -0.3778 41 1 0.0895 -1.4735 -1.6583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981592871.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:35 Heat of formation + Delta-G solvation = -48.665006 kcal Electronic energy + Delta-G solvation = -30630.611574 eV Core-core repulsion = 26376.041619 eV Total energy + Delta-G solvation = -4254.569955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.38263 -46.39164 -40.69544 -39.12611 -36.98114 -34.30624 -33.31965 -32.44504 -31.70708 -30.77663 -27.72797 -26.69409 -25.54512 -24.38042 -23.65537 -22.35388 -21.84648 -19.74158 -19.15750 -17.47737 -17.39344 -17.11966 -16.93129 -16.26358 -16.12127 -15.60517 -15.33684 -14.98250 -14.36874 -14.19016 -13.80774 -13.69163 -13.36839 -13.24971 -13.14315 -13.08320 -12.74337 -12.63894 -12.38763 -12.24510 -12.01212 -11.76970 -11.36664 -11.00866 -10.89848 -10.68790 -10.51647 -10.22694 -10.17542 -9.98424 -9.86926 -9.70828 -9.63164 -9.35620 -9.10772 -8.40316 -8.11375 -6.58841 -5.71229 -3.15999 0.78024 1.09273 2.84168 3.33652 3.47439 3.53160 3.58333 3.62685 3.77918 4.35145 4.52977 4.59505 4.64565 4.70589 4.97905 5.20185 5.29342 5.30255 5.39293 5.39716 5.48364 5.57521 5.65239 5.76515 5.88360 5.92677 5.95135 6.03231 6.15081 6.28172 6.43878 6.45219 6.53739 6.83490 6.86498 7.08834 7.36100 7.49488 7.78160 7.84566 7.90717 8.43219 8.54093 9.29209 9.95622 10.41117 11.37047 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.008654 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.883862 B = 3234.753160 C = 4306.449183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.010 3.990 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.061 0.939 9 N -0.587 5.587 10 C 0.163 3.837 11 C -0.173 4.173 12 C 0.132 3.868 13 N -0.568 5.568 14 C 0.572 3.428 15 O -0.547 6.547 16 C -0.131 4.131 17 C -0.050 4.050 18 C -0.161 4.161 19 C 0.114 3.886 20 N -0.454 5.454 21 C 0.105 3.895 22 C 0.322 3.678 23 F -0.188 7.188 24 F -0.162 7.162 25 C 0.067 3.933 26 C 0.169 3.831 27 H 0.251 0.749 28 H 0.031 0.969 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.164 0.836 37 H 0.123 0.877 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 -8.240 -9.794 13.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.369 4.369 8 H 0.079 0.921 9 N -0.308 5.308 10 C 0.035 3.965 11 C -0.214 4.214 12 C 0.011 3.989 13 N -0.298 5.298 14 C 0.359 3.641 15 O -0.426 6.426 16 C -0.136 4.136 17 C -0.076 4.076 18 C -0.181 4.181 19 C -0.044 4.044 20 N -0.162 5.162 21 C -0.035 4.035 22 C 0.267 3.733 23 F -0.169 7.169 24 F -0.143 7.143 25 C -0.058 4.058 26 C 0.044 3.956 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.182 0.818 37 H 0.140 0.860 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.330 -7.454 -10.139 12.798 hybrid contribution -0.141 0.349 0.375 0.531 sum -2.471 -7.105 -9.763 12.325 Atomic orbital electron populations 1.69950 1.05109 1.25142 1.55583 1.24954 0.95249 0.97991 1.00587 0.86471 0.79158 0.84166 0.78271 1.20712 1.21926 1.20513 1.19046 0.90730 0.84041 1.43061 0.92107 1.43556 1.27663 1.03577 1.55990 1.20275 0.93707 0.88670 0.93858 1.21908 1.00900 1.00577 0.97995 1.20608 0.93442 0.90844 0.94038 1.47247 1.18026 1.45312 1.19227 1.17821 0.85052 0.80048 0.81209 1.90729 1.23284 1.61724 1.66897 1.20644 0.95979 0.95764 1.01208 1.21630 0.91542 1.00183 0.94276 1.22139 1.01440 0.94597 0.99885 1.22896 0.90683 0.95551 0.95249 1.67345 1.06252 1.32915 1.09734 1.21743 0.96360 0.89542 0.95845 1.20026 0.92404 0.75915 0.84958 1.93024 1.96717 1.30324 1.96825 1.93205 1.93837 1.84719 1.42517 1.22405 0.83443 1.01229 0.98709 1.21746 0.88989 0.93198 0.91706 0.93919 0.95034 0.93558 0.92567 0.90946 0.91900 0.90261 0.83692 0.83738 0.81842 0.86025 0.91513 0.91724 0.94108 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.21 10.88 55.49 0.60 -25.60 16 2 C 0.01 0.28 5.03 -17.43 -0.09 0.19 16 3 Si 0.89 23.02 29.57 -169.99 -5.03 18.00 16 4 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.49 9.24 -15.06 -0.14 -6.63 16 8 H 0.06 1.71 7.85 -52.49 -0.41 1.29 16 9 N -0.59 -13.95 2.53 -172.30 -0.44 -14.38 16 10 C 0.16 3.26 5.63 -5.24 -0.03 3.23 16 11 C -0.17 -3.07 5.64 -29.13 -0.16 -3.23 16 12 C 0.13 2.13 5.72 -5.91 -0.03 2.09 16 13 N -0.57 -10.00 2.47 -178.08 -0.44 -10.44 16 14 C 0.57 10.68 5.10 -12.33 -0.06 10.61 16 15 O -0.55 -11.19 15.59 5.32 0.08 -11.11 16 16 C -0.13 -2.26 4.96 -104.82 -0.52 -2.78 16 17 C -0.05 -0.67 7.86 -38.87 -0.31 -0.97 16 18 C -0.16 -1.83 10.10 -39.50 -0.40 -2.23 16 19 C 0.11 1.51 11.17 -17.47 -0.20 1.32 16 20 N -0.45 -7.95 9.85 -9.15 -0.09 -8.04 16 21 C 0.10 1.97 6.61 -82.17 -0.54 1.42 16 22 C 0.32 6.34 5.03 36.00 0.18 6.52 16 23 F -0.19 -4.02 16.97 2.25 0.04 -3.98 16 24 F -0.16 -3.71 14.84 2.25 0.03 -3.68 16 25 C 0.07 1.15 4.97 -4.84 -0.02 1.12 16 26 C 0.17 3.78 5.14 -2.01 -0.01 3.77 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.03 0.57 7.58 -51.93 -0.39 0.18 16 29 H 0.05 0.95 8.02 -51.93 -0.42 0.54 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.55 7.91 -51.93 -0.41 1.14 16 32 H 0.06 0.85 8.06 -51.92 -0.42 0.43 16 33 H 0.08 1.29 7.08 -51.93 -0.37 0.93 16 34 H 0.15 1.53 7.12 -52.49 -0.37 1.15 16 35 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.12 2.00 8.14 -51.93 -0.42 1.57 16 38 H 0.07 1.00 4.22 -51.93 -0.22 0.78 16 39 H 0.06 0.97 7.73 -51.93 -0.40 0.57 16 40 H 0.04 0.98 7.96 -51.93 -0.41 0.57 16 41 H 0.07 1.88 6.64 -51.93 -0.34 1.54 16 LS Contribution 337.12 15.07 5.08 5.08 Total: -1.00 -33.52 337.12 -7.48 -41.01 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.00 Total: -1.29 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: -2.33 Total: 14.44 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.36 Total: -58.46 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.11 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 0.07 Total: -7.66 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.03 Total: 18.00 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.52 -7.48 -41.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981592871.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.659 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds