Wall clock time and date at job start Tue Mar 31 2020 14:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48500 * 109.47159 * 270.00209 * 3 2 1 5 5 H 1.48504 * 109.47042 * 29.99872 * 3 2 1 6 6 H 1.48496 * 109.47416 * 150.00190 * 3 2 1 7 7 C 1.38813 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99947 * 190.12296 * 7 2 1 9 9 N 1.36941 * 120.00001 * 10.12108 * 7 2 1 10 10 C 1.43459 * 118.94241 * 208.58222 * 9 7 2 11 11 C 1.53789 * 107.96664 * 273.63393 * 10 9 7 12 12 C 1.47148 * 111.83917 * 281.67324 * 11 10 9 13 13 N 1.48208 * 110.34349 * 58.29391 * 12 11 10 14 14 C 1.34780 * 119.97194 * 102.46751 * 13 12 11 15 15 O 1.21551 * 119.99783 * 4.43584 * 14 13 12 16 16 C 1.47836 * 119.99740 * 184.43336 * 14 13 12 17 17 C 1.40026 * 120.55942 * 301.26713 * 16 14 13 18 18 C 1.38352 * 118.28644 * 180.02562 * 17 16 14 19 19 C 1.38352 * 119.30840 * 0.02562 * 18 17 16 20 20 N 1.31925 * 121.07707 * 0.02562 * 19 18 17 21 21 C 1.31696 * 121.88130 * 359.97438 * 20 19 18 22 22 C 1.50695 * 119.72200 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.47033 * 20.95475 * 22 21 20 24 24 F 1.39894 * 109.47531 * 140.95449 * 22 21 20 25 25 C 1.43621 * 120.05594 * 282.74241 * 13 12 11 26 26 C 1.48858 * 118.93640 * 28.56405 * 9 7 2 27 27 H 0.96996 * 120.00613 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.76124 * 154.01228 * 10 9 7 29 29 H 1.09005 * 109.80072 * 33.26948 * 10 9 7 30 30 H 1.08997 * 109.00987 * 161.06428 * 11 10 9 31 31 H 1.09004 * 108.94794 * 42.23433 * 11 10 9 32 32 H 1.09008 * 109.31953 * 298.02695 * 12 11 10 33 33 H 1.08998 * 109.18307 * 178.47400 * 12 11 10 34 34 H 1.08002 * 120.85754 * 0.05317 * 17 16 14 35 35 H 1.08005 * 120.34793 * 180.27579 * 18 17 16 36 36 H 1.07996 * 119.46669 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.47356 * 260.96045 * 22 21 20 38 38 H 1.08998 * 108.87357 * 211.19634 * 25 13 12 39 39 H 1.09001 * 108.87478 * 329.63195 * 25 13 12 40 40 H 1.08996 * 109.48316 * 260.60080 * 26 9 7 41 41 H 1.09001 * 109.48452 * 20.63948 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0777 -1.2094 0.1638 9 7 1.3416 -2.3788 -0.2095 10 6 1.8585 -3.5838 0.3725 11 6 2.8950 -4.1731 -0.5989 12 6 2.2550 -4.8776 -1.7211 13 7 1.3602 -3.9584 -2.4635 14 6 1.7599 -3.4327 -3.6384 15 8 2.8185 -3.7743 -4.1283 16 6 0.9106 -2.4405 -4.3312 17 6 -0.3989 -2.7635 -4.7077 18 6 -1.1519 -1.7995 -5.3540 19 6 -0.5925 -0.5594 -5.6059 20 7 0.6447 -0.2835 -5.2403 21 6 1.4010 -1.1673 -4.6228 22 6 2.8082 -0.8003 -4.2276 23 9 2.9282 0.5923 -4.1697 24 9 3.0974 -1.3458 -2.9723 25 6 0.0701 -3.6229 -1.9291 26 6 0.1015 -2.3661 -1.0328 27 1 -0.4851 0.8400 -0.0004 28 1 1.0483 -4.2969 0.5241 29 1 2.3345 -3.3584 1.3269 30 1 3.5317 -4.8727 -0.0574 31 1 3.5110 -3.3645 -0.9926 32 1 1.6729 -5.7151 -1.3362 33 1 3.0254 -5.2531 -2.3945 34 1 -0.8106 -3.7398 -4.4985 35 1 -2.1672 -2.0114 -5.6553 36 1 -1.1781 0.1951 -6.1099 37 1 3.5073 -1.1948 -4.9651 38 1 -0.6181 -3.4440 -2.7552 39 1 -0.2981 -4.4642 -1.3419 40 1 -0.7697 -2.3629 -0.3778 41 1 0.0895 -1.4735 -1.6583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981592871.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:34 Heat of formation + Delta-G solvation = -70.335971 kcal Electronic energy + Delta-G solvation = -30631.551297 eV Core-core repulsion = 26376.041619 eV Total energy + Delta-G solvation = -4255.509679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.01063 -48.04910 -41.93699 -40.42105 -38.56145 -35.98217 -34.73902 -33.62983 -33.13178 -32.55147 -29.35925 -28.08258 -27.13135 -25.65528 -25.43235 -23.65230 -23.19995 -21.47143 -20.47090 -18.93438 -18.80437 -18.64459 -18.43495 -17.96297 -17.60183 -16.94401 -16.91935 -16.30380 -16.00688 -15.71663 -15.52636 -15.01035 -14.87683 -14.80845 -14.60288 -14.48581 -14.30699 -14.08246 -13.89505 -13.82706 -13.42886 -13.28876 -13.12338 -12.88517 -12.54730 -12.45015 -12.33308 -12.10399 -11.72801 -11.68969 -11.40493 -11.23273 -10.91159 -10.61271 -10.46367 -10.26898 -9.55968 -8.55630 -7.83647 -5.27001 -0.36433 0.02668 1.33287 1.41484 1.43766 1.46341 2.10465 2.34083 2.49173 2.61510 3.01318 3.19301 3.31906 3.40204 3.70868 3.76709 3.84410 3.97156 4.06995 4.09644 4.22785 4.28561 4.35075 4.42558 4.51721 4.61179 4.72486 4.82768 4.86016 4.93394 4.96658 5.08208 5.27813 5.31295 5.47410 5.53300 5.63870 5.73916 5.80104 6.41491 6.45235 6.68996 7.06220 7.23497 8.00294 8.37064 9.20140 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.008654 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.883862 B = 3234.753160 C = 4306.449183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.032 4.032 3 Si 0.925 3.075 4 H -0.299 1.299 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.227 4.227 8 H 0.043 0.957 9 N -0.599 5.599 10 C 0.158 3.842 11 C -0.158 4.158 12 C 0.128 3.872 13 N -0.570 5.570 14 C 0.569 3.431 15 O -0.574 6.574 16 C -0.152 4.152 17 C -0.051 4.051 18 C -0.136 4.136 19 C 0.106 3.894 20 N -0.488 5.488 21 C 0.073 3.927 22 C 0.309 3.691 23 F -0.205 7.205 24 F -0.187 7.187 25 C 0.079 3.921 26 C 0.179 3.821 27 H 0.244 0.756 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.087 0.913 31 H 0.026 0.974 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.180 0.820 35 H 0.198 0.802 36 H 0.200 0.800 37 H 0.145 0.855 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.021 0.979 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 -10.716 -10.650 16.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.227 4.227 3 Si 0.756 3.244 4 H -0.227 1.227 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.358 4.358 8 H 0.061 0.939 9 N -0.322 5.322 10 C 0.031 3.969 11 C -0.198 4.198 12 C 0.007 3.993 13 N -0.299 5.299 14 C 0.356 3.644 15 O -0.456 6.456 16 C -0.157 4.157 17 C -0.077 4.077 18 C -0.154 4.154 19 C -0.052 4.052 20 N -0.197 5.197 21 C -0.065 4.065 22 C 0.254 3.746 23 F -0.186 7.186 24 F -0.168 7.168 25 C -0.046 4.046 26 C 0.053 3.947 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.106 0.894 31 H 0.045 0.955 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.197 0.803 35 H 0.215 0.785 36 H 0.216 0.784 37 H 0.162 0.838 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.039 0.961 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.618 -9.962 -10.974 15.524 hybrid contribution 0.570 1.105 0.600 1.381 sum -4.048 -8.856 -10.374 14.228 Atomic orbital electron populations 1.70044 1.05454 1.24731 1.57323 1.25312 0.95826 0.99530 1.02051 0.85893 0.78817 0.82666 0.77031 1.22715 1.21592 1.19971 1.19046 0.90116 0.85639 1.41006 0.93917 1.43768 1.27835 1.03668 1.56887 1.20456 0.94913 0.87854 0.93635 1.21706 1.00065 0.99804 0.98266 1.20764 0.93990 0.91378 0.93119 1.47369 1.18405 1.45236 1.18912 1.18133 0.84838 0.79863 0.81516 1.90696 1.24465 1.62638 1.67758 1.20683 0.97754 0.94937 1.02338 1.22111 0.89874 1.02098 0.93577 1.22710 1.03091 0.92754 0.96888 1.23673 0.89483 0.97553 0.94490 1.67291 1.08212 1.33452 1.10781 1.21486 0.95958 0.90843 0.98228 1.20496 0.94959 0.74896 0.84223 1.92967 1.96980 1.31819 1.96844 1.93135 1.94241 1.85022 1.44371 1.22241 0.83847 0.99514 0.99029 1.21498 0.87431 0.94442 0.91288 0.94650 0.92029 0.94767 0.89440 0.95503 0.87697 0.90505 0.80269 0.78463 0.78353 0.83822 0.88901 0.88345 0.96057 0.95070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.47 10.88 21.65 0.24 -54.23 16 2 C -0.03 -1.85 5.03 84.86 0.43 -1.42 16 3 Si 0.93 48.85 29.57 68.60 2.03 50.88 16 4 H -0.30 -16.59 7.11 99.48 0.71 -15.88 16 5 H -0.29 -15.00 7.11 99.48 0.71 -14.29 16 6 H -0.27 -14.07 7.11 99.48 0.71 -13.36 16 7 C -0.23 -12.65 9.24 84.03 0.78 -11.87 16 8 H 0.04 2.50 7.85 -2.91 -0.02 2.48 16 9 N -0.60 -28.47 2.53 -699.04 -1.77 -30.24 16 10 C 0.16 6.08 5.63 87.21 0.49 6.57 16 11 C -0.16 -5.36 5.64 29.04 0.16 -5.19 16 12 C 0.13 3.76 5.72 84.23 0.48 4.24 16 13 N -0.57 -18.79 2.47 -835.61 -2.06 -20.85 16 14 C 0.57 20.72 5.10 86.78 0.44 21.16 16 15 O -0.57 -23.53 15.59 -3.88 -0.06 -23.59 16 16 C -0.15 -5.08 4.96 -19.99 -0.10 -5.18 16 17 C -0.05 -1.17 7.86 22.73 0.18 -0.99 16 18 C -0.14 -2.47 10.10 22.32 0.23 -2.24 16 19 C 0.11 2.52 11.17 84.71 0.95 3.47 16 20 N -0.49 -16.99 9.85 -182.85 -1.80 -18.79 16 21 C 0.07 2.79 6.61 42.89 0.28 3.07 16 22 C 0.31 12.80 5.03 71.23 0.36 13.16 16 23 F -0.20 -9.30 16.97 44.97 0.76 -8.54 16 24 F -0.19 -9.03 14.84 44.97 0.67 -8.37 16 25 C 0.08 2.42 4.97 87.39 0.43 2.86 16 26 C 0.18 7.86 5.14 86.40 0.44 8.31 16 27 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.06 2.01 7.58 -2.39 -0.02 1.99 16 29 H 0.03 1.38 8.02 -2.38 -0.02 1.36 16 30 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.03 1.15 7.91 -2.39 -0.02 1.13 16 32 H 0.10 2.26 8.06 -2.38 -0.02 2.25 16 33 H 0.08 2.35 7.08 -2.39 -0.02 2.33 16 34 H 0.18 2.79 7.12 -2.91 -0.02 2.77 16 35 H 0.20 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.20 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.14 5.03 8.14 -2.38 -0.02 5.01 16 38 H 0.09 2.39 4.22 -2.39 -0.01 2.38 16 39 H 0.10 2.44 7.73 -2.39 -0.02 2.42 16 40 H 0.02 1.01 7.96 -2.39 -0.02 0.99 16 41 H 0.03 1.62 6.64 -2.39 -0.02 1.61 16 Total: -1.00 -78.81 337.12 4.62 -74.18 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.07 Total: 3.61 kcal Atomic # 6 Polarization: 30.38 SS G_CDS: 5.56 Total: 35.94 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -5.39 Total: -124.12 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.06 Total: -23.59 kcal Atomic # 9 Polarization: -18.34 SS G_CDS: 1.43 Total: -16.91 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.03 Total: 50.88 kcal Total: -78.81 4.62 -74.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981592871.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.846 kcal (2) G-P(sol) polarization free energy of solvation -78.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds