Wall clock time and date at job start Tue Mar 31 2020 14:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.99807 * 2 1 4 4 C 1.54334 * 109.99088 * 238.95586 * 2 1 3 5 5 H 1.08996 * 110.51743 * 336.97951 * 4 2 1 6 6 N 1.46503 * 110.99758 * 100.12958 * 4 2 1 7 7 C 1.36939 * 119.99934 * 200.23522 * 6 4 2 8 8 H 1.08004 * 119.99723 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00325 * 179.97438 * 7 6 4 10 10 N 1.31619 * 119.99802 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00288 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46802 * 60.00322 * 11 9 7 13 13 H 1.48500 * 109.47436 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47520 * 300.00487 * 11 9 7 15 15 C 1.55161 * 103.01963 * 218.66371 * 4 2 1 16 16 C 1.54902 * 101.57872 * 35.31303 * 15 4 2 17 17 N 1.47021 * 109.88167 * 121.09346 * 2 1 3 18 18 C 1.34782 * 125.64852 * 298.39722 * 17 2 1 19 19 O 1.21559 * 119.99473 * 3.31601 * 18 17 2 20 20 C 1.47836 * 120.00307 * 183.31797 * 18 17 2 21 21 C 1.40020 * 120.56149 * 153.64595 * 20 18 17 22 22 C 1.38355 * 118.28975 * 180.24644 * 21 20 18 23 23 C 1.38350 * 119.30616 * 359.75414 * 22 21 20 24 24 C 1.50698 * 119.46355 * 180.02562 * 23 22 21 25 25 F 1.39895 * 109.46922 * 300.02038 * 24 23 22 26 26 F 1.39895 * 109.47094 * 60.02256 * 24 23 22 27 27 N 1.31930 * 121.07593 * 0.02562 * 23 22 21 28 28 C 1.31693 * 121.88113 * 359.97438 * 27 23 22 29 29 H 1.08996 * 109.47007 * 300.36234 * 1 2 3 30 30 H 1.08998 * 109.46668 * 60.36350 * 1 2 3 31 31 H 1.08998 * 109.46971 * 180.36047 * 1 2 3 32 32 H 0.97001 * 120.00058 * 20.22740 * 6 4 2 33 33 H 0.96993 * 120.00108 * 180.02562 * 10 9 7 34 34 H 1.08996 * 111.00277 * 277.23741 * 15 4 2 35 35 H 1.09001 * 110.99619 * 153.38383 * 15 4 2 36 36 H 1.08999 * 110.36372 * 204.14997 * 16 15 4 37 37 H 1.08997 * 110.46651 * 81.87332 * 16 15 4 38 38 H 1.08011 * 120.85815 * 359.97438 * 21 20 18 39 39 H 1.08008 * 120.34738 * 179.72751 * 22 21 20 40 40 H 1.09005 * 109.46676 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.72238 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7479 -1.2426 5 1 1.3054 -1.4407 -1.6195 6 7 2.4632 0.1936 -2.2892 7 6 2.5625 -0.2278 -3.5883 8 1 2.3423 -1.2544 -3.8413 9 6 2.9462 0.6644 -4.5801 10 7 3.2151 1.9154 -4.2717 11 14 3.0824 0.0893 -6.3521 12 1 1.7627 -0.4127 -6.8122 13 1 3.5070 1.2248 -7.2098 14 1 4.0861 -1.0014 -6.4429 15 6 3.2865 -1.5184 -0.6913 16 6 2.8099 -1.8825 0.7370 17 7 2.0300 -0.7140 1.1839 18 6 1.8074 -0.3620 2.4658 19 8 1.0922 0.5876 2.7197 20 6 2.4329 -1.1305 3.5628 21 6 2.6894 -0.5260 4.7995 22 6 3.2811 -1.2876 5.7915 23 6 3.5927 -2.6108 5.5342 24 6 4.2367 -3.4438 6.6124 25 9 5.4569 -2.8671 6.9808 26 9 3.3919 -3.4991 7.7260 27 7 3.3352 -3.1552 4.3604 28 6 2.7734 -2.4718 3.3849 29 1 -0.3633 0.5194 0.8867 30 1 -0.3632 0.5082 -0.8932 31 1 -0.3633 -1.0276 0.0065 32 1 2.6613 1.1156 -2.0619 33 1 3.4829 2.5389 -4.9647 34 1 4.1670 -0.8769 -0.6577 35 1 3.4807 -2.4157 -1.2789 36 1 3.6655 -2.0411 1.3934 37 1 2.1806 -2.7721 0.7136 38 1 2.4360 0.5095 4.9731 39 1 3.4979 -0.8536 6.7565 40 1 4.4101 -4.4524 6.2372 41 1 2.5787 -2.9524 2.4376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986342599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:22 Heat of formation + Delta-G solvation = -70.595156 kcal Electronic energy + Delta-G solvation = -27117.605940 eV Core-core repulsion = 22862.085023 eV Total energy + Delta-G solvation = -4255.520918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.47309 -47.45768 -41.14942 -39.64980 -37.57226 -34.37680 -33.29132 -32.80505 -31.46969 -30.99826 -29.31638 -27.41587 -25.56750 -24.29122 -23.83770 -23.04382 -22.22543 -20.44974 -19.53868 -18.22531 -18.14052 -17.71201 -17.35171 -17.29198 -16.56568 -16.24244 -15.20164 -15.05565 -14.86536 -14.63641 -14.40898 -14.03318 -13.82120 -13.77604 -13.75331 -13.53638 -13.51368 -13.14314 -12.87800 -12.73837 -12.29070 -11.99461 -11.85075 -11.56991 -11.26075 -11.11517 -10.88045 -10.68188 -10.43888 -10.39727 -10.35342 -10.12377 -9.86332 -9.71804 -9.68733 -9.00997 -8.62658 -7.10895 -5.87594 -3.18737 0.06655 0.70767 2.51637 2.76340 2.88879 3.29485 3.37574 3.42505 3.43605 3.69309 3.91493 4.20299 4.23855 4.40030 4.49019 4.54721 4.57925 4.76691 4.82773 5.03846 5.11392 5.17733 5.32814 5.38912 5.44988 5.54762 5.59793 5.65802 5.80416 5.94187 5.97711 6.03121 6.17937 6.33337 6.47197 6.51120 6.57672 6.81664 7.19363 7.48117 7.59338 8.02961 8.29421 9.41032 9.94267 10.28806 11.34395 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.025172 B = 0.002483 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.083742 B =11274.552164 C =11814.600440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.081 0.919 4 C 0.177 3.823 5 H 0.067 0.933 6 N -0.714 5.714 7 C -0.246 4.246 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.155 4.155 16 C 0.084 3.916 17 N -0.598 5.598 18 C 0.572 3.428 19 O -0.530 6.530 20 C -0.153 4.153 21 C -0.020 4.020 22 C -0.138 4.138 23 C 0.061 3.939 24 C 0.325 3.675 25 F -0.192 7.192 26 F -0.192 7.192 27 N -0.459 5.459 28 C 0.122 3.878 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.386 0.614 33 H 0.258 0.742 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.134 0.866 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 -10.886 20.462 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.099 0.901 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.354 5.354 7 C -0.377 4.377 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.197 4.197 16 C -0.039 4.039 17 N -0.331 5.331 18 C 0.359 3.641 19 O -0.408 6.408 20 C -0.158 4.158 21 C -0.046 4.046 22 C -0.158 4.158 23 C -0.077 4.077 24 C 0.270 3.730 25 F -0.173 7.173 26 F -0.173 7.173 27 N -0.168 5.168 28 C -0.037 4.037 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.220 0.780 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.172 0.828 39 H 0.166 0.834 40 H 0.151 0.849 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.341 -11.261 20.362 23.271 hybrid contribution 0.092 0.943 -0.664 1.157 sum 0.432 -10.318 19.697 22.240 Atomic orbital electron populations 1.22063 0.94497 1.01819 1.02979 1.21993 0.94667 0.96978 0.83933 0.90111 1.21245 0.93518 0.91669 0.87085 0.91554 1.42325 1.80709 1.09313 1.03093 1.19140 1.39549 0.95263 0.83757 0.90985 1.24773 1.01895 0.95638 0.98222 1.69649 1.52083 1.03192 1.32754 0.86248 0.77853 0.77335 0.84589 1.21139 1.21661 1.21163 1.23611 1.01575 1.02029 0.92455 1.22819 0.94848 0.88255 0.97987 1.48468 1.51473 1.28395 1.04770 1.17563 0.81367 0.83925 0.81239 1.90795 1.38055 1.28854 1.83090 1.21191 1.02252 0.96337 0.96000 1.21747 0.91516 1.01098 0.90255 1.21887 0.98785 0.94038 1.01113 1.21689 0.99039 0.93065 0.93923 1.20111 0.74537 0.97893 0.80467 1.93042 1.44662 1.87212 1.92380 1.93038 1.71679 1.97413 1.55220 1.67306 1.11507 1.38357 0.99632 1.23722 0.91612 0.90489 0.97840 0.91784 0.90909 0.92944 0.77959 0.93250 0.90393 0.90166 0.90642 0.90819 0.82779 0.83399 0.84862 0.80030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.10 37.16 0.34 -2.09 16 2 C 0.13 2.09 3.24 -66.94 -0.22 1.88 16 3 H 0.08 1.50 7.70 -51.93 -0.40 1.10 16 4 C 0.18 3.14 3.11 -66.09 -0.21 2.94 16 5 H 0.07 1.18 7.82 -51.93 -0.41 0.77 16 6 N -0.71 -16.56 5.25 -51.64 -0.27 -16.83 16 7 C -0.25 -6.37 9.98 -15.06 -0.15 -6.52 16 8 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 9 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 10 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 11 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.16 -2.32 6.77 -24.58 -0.17 -2.49 16 16 C 0.08 0.98 5.03 -2.53 -0.01 0.96 16 17 N -0.60 -8.46 3.06 -164.12 -0.50 -8.97 16 18 C 0.57 8.30 7.48 -12.33 -0.09 8.21 16 19 O -0.53 -9.28 15.63 5.31 0.08 -9.20 16 20 C -0.15 -1.79 5.72 -104.82 -0.60 -2.39 16 21 C -0.02 -0.20 9.73 -38.87 -0.38 -0.58 16 22 C -0.14 -1.25 9.60 -39.50 -0.38 -1.63 16 23 C 0.06 0.58 6.28 -82.51 -0.52 0.07 16 24 C 0.32 2.51 5.54 36.00 0.20 2.71 16 25 F -0.19 -1.70 17.25 2.25 0.04 -1.66 16 26 F -0.19 -1.68 17.25 2.25 0.04 -1.64 16 27 N -0.46 -4.74 10.23 -9.14 -0.09 -4.84 16 28 C 0.12 1.26 9.14 -17.13 -0.16 1.10 16 29 H 0.06 1.04 6.78 -51.93 -0.35 0.69 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.39 9.72 7.53 -40.82 -0.31 9.41 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 0.77 6.13 -51.93 -0.32 0.45 16 37 H 0.07 0.69 7.31 -51.93 -0.38 0.31 16 38 H 0.15 1.46 7.94 -52.48 -0.42 1.04 16 39 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 40 H 0.13 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.18 1.59 4.52 -52.49 -0.24 1.35 16 LS Contribution 349.41 15.07 5.27 5.27 Total: -1.00 -30.78 349.41 -7.07 -37.85 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.90 Total: 8.05 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -2.43 Total: 1.84 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.14 Total: -56.92 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.20 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.08 Total: -3.30 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.78 -7.07 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986342599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.743 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds