Wall clock time and date at job start Tue Mar 31 2020 14:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.99807 * 2 1 4 4 C 1.54334 * 109.99088 * 238.95586 * 2 1 3 5 5 H 1.08996 * 110.51743 * 336.97951 * 4 2 1 6 6 N 1.46503 * 110.99758 * 100.12958 * 4 2 1 7 7 C 1.36939 * 119.99934 * 200.23522 * 6 4 2 8 8 H 1.08004 * 119.99723 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00325 * 179.97438 * 7 6 4 10 10 N 1.31619 * 119.99802 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00288 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46802 * 60.00322 * 11 9 7 13 13 H 1.48500 * 109.47436 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47520 * 300.00487 * 11 9 7 15 15 C 1.55161 * 103.01963 * 218.66371 * 4 2 1 16 16 C 1.54902 * 101.57872 * 35.31303 * 15 4 2 17 17 N 1.47021 * 109.88167 * 121.09346 * 2 1 3 18 18 C 1.34782 * 125.64852 * 298.39722 * 17 2 1 19 19 O 1.21559 * 119.99473 * 3.31601 * 18 17 2 20 20 C 1.47836 * 120.00307 * 183.31797 * 18 17 2 21 21 C 1.40020 * 120.56149 * 153.64595 * 20 18 17 22 22 C 1.38355 * 118.28975 * 180.24644 * 21 20 18 23 23 C 1.38350 * 119.30616 * 359.75414 * 22 21 20 24 24 C 1.50698 * 119.46355 * 180.02562 * 23 22 21 25 25 F 1.39895 * 109.46922 * 300.02038 * 24 23 22 26 26 F 1.39895 * 109.47094 * 60.02256 * 24 23 22 27 27 N 1.31930 * 121.07593 * 0.02562 * 23 22 21 28 28 C 1.31693 * 121.88113 * 359.97438 * 27 23 22 29 29 H 1.08996 * 109.47007 * 300.36234 * 1 2 3 30 30 H 1.08998 * 109.46668 * 60.36350 * 1 2 3 31 31 H 1.08998 * 109.46971 * 180.36047 * 1 2 3 32 32 H 0.97001 * 120.00058 * 20.22740 * 6 4 2 33 33 H 0.96993 * 120.00108 * 180.02562 * 10 9 7 34 34 H 1.08996 * 111.00277 * 277.23741 * 15 4 2 35 35 H 1.09001 * 110.99619 * 153.38383 * 15 4 2 36 36 H 1.08999 * 110.36372 * 204.14997 * 16 15 4 37 37 H 1.08997 * 110.46651 * 81.87332 * 16 15 4 38 38 H 1.08011 * 120.85815 * 359.97438 * 21 20 18 39 39 H 1.08008 * 120.34738 * 179.72751 * 22 21 20 40 40 H 1.09005 * 109.46676 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.72238 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7479 -1.2426 5 1 1.3054 -1.4407 -1.6195 6 7 2.4632 0.1936 -2.2892 7 6 2.5625 -0.2278 -3.5883 8 1 2.3423 -1.2544 -3.8413 9 6 2.9462 0.6644 -4.5801 10 7 3.2151 1.9154 -4.2717 11 14 3.0824 0.0893 -6.3521 12 1 1.7627 -0.4127 -6.8122 13 1 3.5070 1.2248 -7.2098 14 1 4.0861 -1.0014 -6.4429 15 6 3.2865 -1.5184 -0.6913 16 6 2.8099 -1.8825 0.7370 17 7 2.0300 -0.7140 1.1839 18 6 1.8074 -0.3620 2.4658 19 8 1.0922 0.5876 2.7197 20 6 2.4329 -1.1305 3.5628 21 6 2.6894 -0.5260 4.7995 22 6 3.2811 -1.2876 5.7915 23 6 3.5927 -2.6108 5.5342 24 6 4.2367 -3.4438 6.6124 25 9 5.4569 -2.8671 6.9808 26 9 3.3919 -3.4991 7.7260 27 7 3.3352 -3.1552 4.3604 28 6 2.7734 -2.4718 3.3849 29 1 -0.3633 0.5194 0.8867 30 1 -0.3632 0.5082 -0.8932 31 1 -0.3633 -1.0276 0.0065 32 1 2.6613 1.1156 -2.0619 33 1 3.4829 2.5389 -4.9647 34 1 4.1670 -0.8769 -0.6577 35 1 3.4807 -2.4157 -1.2789 36 1 3.6655 -2.0411 1.3934 37 1 2.1806 -2.7721 0.7136 38 1 2.4360 0.5095 4.9731 39 1 3.4979 -0.8536 6.7565 40 1 4.4101 -4.4524 6.2372 41 1 2.5787 -2.9524 2.4376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986342599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:22 Heat of formation + Delta-G solvation = -90.149424 kcal Electronic energy + Delta-G solvation = -27118.453877 eV Core-core repulsion = 22862.085023 eV Total energy + Delta-G solvation = -4256.368855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.10464 -48.09520 -42.08975 -40.69291 -38.84876 -36.01907 -34.29190 -33.74628 -32.95411 -32.18074 -30.83381 -28.22076 -27.01150 -25.40907 -24.90641 -24.36842 -23.21621 -21.76238 -20.73714 -19.24660 -18.95586 -18.82336 -18.34551 -18.22041 -17.67574 -17.24501 -16.57480 -16.14411 -15.95435 -15.78973 -15.45804 -15.17127 -14.99750 -14.78927 -14.68870 -14.49781 -14.46051 -14.33172 -14.13049 -13.68243 -13.55739 -13.30542 -13.10692 -12.88793 -12.64530 -12.56549 -12.32266 -12.19109 -12.11286 -11.70242 -11.58999 -11.37850 -11.21394 -10.89665 -10.75092 -10.50012 -9.80831 -9.02135 -7.93088 -5.23011 -0.75607 -0.05516 1.49143 1.50833 1.53077 1.58835 1.70049 2.16914 2.43033 2.58381 3.10486 3.18832 3.26828 3.40610 3.53402 3.61165 3.70531 3.75116 3.83337 3.93427 3.97466 4.10516 4.15677 4.27645 4.36083 4.38522 4.50559 4.58820 4.65422 4.68798 4.80799 4.88891 5.02455 5.18182 5.21009 5.23310 5.28193 5.44324 5.56132 6.26915 6.35823 6.42411 6.89329 7.33888 8.05849 8.28913 9.30255 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.025172 B = 0.002483 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.083742 B =11274.552164 C =11814.600440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.134 3.866 3 H 0.049 0.951 4 C 0.171 3.829 5 H 0.075 0.925 6 N -0.729 5.729 7 C -0.235 4.235 8 H 0.085 0.915 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.972 3.028 12 H -0.277 1.277 13 H -0.302 1.302 14 H -0.275 1.275 15 C -0.148 4.148 16 C 0.090 3.910 17 N -0.598 5.598 18 C 0.572 3.428 19 O -0.569 6.569 20 C -0.168 4.168 21 C -0.023 4.023 22 C -0.137 4.137 23 C 0.059 3.941 24 C 0.328 3.672 25 F -0.198 7.198 26 F -0.198 7.198 27 N -0.463 5.463 28 C 0.127 3.873 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.371 0.629 33 H 0.250 0.750 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.156 0.844 39 H 0.169 0.831 40 H 0.162 0.838 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 -13.933 21.639 25.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.030 3.970 3 H 0.067 0.933 4 C 0.061 3.939 5 H 0.093 0.907 6 N -0.369 5.369 7 C -0.367 4.367 8 H 0.103 0.897 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.801 3.199 12 H -0.203 1.203 13 H -0.229 1.229 14 H -0.201 1.201 15 C -0.188 4.188 16 C -0.031 4.031 17 N -0.330 5.330 18 C 0.361 3.639 19 O -0.449 6.449 20 C -0.174 4.174 21 C -0.049 4.049 22 C -0.157 4.157 23 C -0.080 4.080 24 C 0.273 3.727 25 F -0.179 7.179 26 F -0.179 7.179 27 N -0.172 5.172 28 C -0.031 4.031 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.203 0.797 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.174 0.826 39 H 0.187 0.813 40 H 0.179 0.821 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.620 -14.389 21.576 25.942 hybrid contribution -0.008 1.857 -0.890 2.059 sum 0.612 -12.532 20.687 24.194 Atomic orbital electron populations 1.21960 0.93822 1.02742 1.01876 1.21688 0.95102 0.95548 0.84687 0.93265 1.21449 0.94987 0.91125 0.86326 0.90712 1.42506 1.81110 1.09561 1.03678 1.19576 1.36823 0.95501 0.84766 0.89702 1.25564 1.03219 0.95883 1.02131 1.69820 1.54608 1.04432 1.33370 0.85229 0.78096 0.76533 0.79992 1.20329 1.22891 1.20124 1.23417 0.99071 1.01601 0.94746 1.23003 0.96010 0.88235 0.95893 1.48458 1.51544 1.28866 1.04151 1.17971 0.80745 0.83525 0.81634 1.90774 1.39818 1.30662 1.83653 1.20994 1.03896 0.96969 0.95493 1.21879 0.91376 1.01487 0.90175 1.22118 0.98019 0.93927 1.01603 1.22081 0.98288 0.93440 0.94160 1.20315 0.73899 0.98719 0.79725 1.93033 1.45023 1.87466 1.92392 1.93031 1.71902 1.97435 1.55507 1.67379 1.11715 1.38244 0.99853 1.23915 0.90901 0.89714 0.98549 0.92710 0.92149 0.90918 0.79733 0.94160 0.92600 0.88647 0.88439 0.87150 0.82598 0.81349 0.82081 0.78332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 9.10 71.98 0.66 -3.88 16 2 C 0.13 4.42 3.24 45.35 0.15 4.57 16 3 H 0.05 1.94 7.70 -2.39 -0.02 1.92 16 4 C 0.17 5.95 3.11 46.18 0.14 6.09 16 5 H 0.08 2.51 7.82 -2.39 -0.02 2.49 16 6 N -0.73 -34.30 5.25 -317.30 -1.67 -35.97 16 7 C -0.24 -12.13 9.98 84.03 0.84 -11.29 16 8 H 0.09 4.08 7.83 -2.91 -0.02 4.05 16 9 C -0.08 -4.17 5.50 84.86 0.47 -3.71 16 10 N -0.97 -58.22 13.06 21.65 0.28 -57.94 16 11 Si 0.97 44.32 29.55 68.60 2.03 46.35 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 13 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 14 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 15 C -0.15 -4.14 6.77 31.99 0.22 -3.92 16 16 C 0.09 1.82 5.03 86.85 0.44 2.26 16 17 N -0.60 -16.19 3.06 -791.43 -2.43 -18.61 16 18 C 0.57 16.19 7.48 86.78 0.65 16.84 16 19 O -0.57 -20.17 15.63 -3.90 -0.06 -20.23 16 20 C -0.17 -3.67 5.72 -19.99 -0.11 -3.79 16 21 C -0.02 -0.44 9.73 22.73 0.22 -0.22 16 22 C -0.14 -2.17 9.60 22.32 0.21 -1.96 16 23 C 0.06 0.95 6.28 42.57 0.27 1.22 16 24 C 0.33 4.11 5.54 71.24 0.39 4.51 16 25 F -0.20 -3.00 17.25 44.97 0.78 -2.23 16 26 F -0.20 -2.94 17.25 44.97 0.78 -2.16 16 27 N -0.46 -8.09 10.23 -182.82 -1.87 -9.96 16 28 C 0.13 2.25 9.14 85.02 0.78 3.03 16 29 H 0.05 1.80 6.78 -2.39 -0.02 1.79 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.37 19.47 7.53 -92.71 -0.70 18.78 16 33 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.10 1.63 6.13 -2.39 -0.01 1.61 16 37 H 0.11 1.53 7.31 -2.39 -0.02 1.51 16 38 H 0.16 2.87 7.94 -2.90 -0.02 2.85 16 39 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.16 1.16 8.10 -2.38 -0.02 1.14 16 41 H 0.20 2.65 4.52 -2.91 -0.01 2.64 16 Total: -1.00 -68.07 349.41 3.54 -64.53 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.39 Total: 26.46 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 5.31 Total: 9.76 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -5.68 Total: -122.48 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.06 Total: -20.23 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 1.55 Total: -4.39 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -68.07 3.54 -64.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986342599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.619 kcal (2) G-P(sol) polarization free energy of solvation -68.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds