Wall clock time and date at job start Tue Mar 31 2020 14:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35630 * 125.67781 * 2 1 4 4 C 1.35512 * 108.85132 * 180.29365 * 3 2 1 5 5 Cl 1.73606 * 126.07210 * 179.71594 * 4 3 2 6 6 C 1.39880 * 107.85436 * 359.73266 * 4 3 2 7 7 C 1.37631 * 125.67498 * 179.83593 * 2 1 3 8 8 C 1.46669 * 126.22715 * 359.97143 * 7 2 1 9 9 O 1.21701 * 119.99540 * 351.34422 * 8 7 2 10 10 N 1.34775 * 120.00248 * 171.34235 * 8 7 2 11 11 C 1.48380 * 127.17180 * 353.03029 * 10 8 7 12 12 C 1.54941 * 103.37366 * 219.23048 * 11 10 8 13 13 H 1.09003 * 110.90082 * 81.12894 * 12 11 10 14 14 N 1.46506 * 110.74245 * 204.38556 * 12 11 10 15 15 C 1.36930 * 119.99875 * 268.42043 * 14 12 11 16 16 H 1.08004 * 120.00378 * 359.97438 * 15 14 12 17 17 C 1.38816 * 119.99859 * 179.97438 * 15 14 12 18 18 N 1.31615 * 119.99860 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99890 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47078 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47077 * 119.99798 * 19 17 15 22 22 H 1.48501 * 109.46680 * 239.99868 * 19 17 15 23 23 C 1.54618 * 102.83658 * 322.72166 * 12 11 10 24 24 C 1.52998 * 110.32949 * 262.95687 * 23 12 11 25 25 C 1.53006 * 110.41305 * 140.78688 * 23 12 11 26 26 C 1.47489 * 127.03213 * 173.22240 * 10 8 7 27 27 H 1.08999 * 109.47218 * 264.69941 * 1 2 3 28 28 H 1.09003 * 109.47629 * 24.69748 * 1 2 3 29 29 H 1.09000 * 109.47501 * 144.69819 * 1 2 3 30 30 H 1.08011 * 125.57186 * 359.97438 * 3 2 1 31 31 H 1.07996 * 126.45759 * 179.97438 * 6 4 3 32 32 H 1.08994 * 110.52285 * 100.78947 * 11 10 8 33 33 H 1.09001 * 110.83294 * 337.81542 * 11 10 8 34 34 H 0.96997 * 119.99389 * 88.41362 * 14 12 11 35 35 H 0.96999 * 119.99897 * 180.02562 * 18 17 15 36 36 H 1.08994 * 109.47510 * 177.07574 * 24 23 12 37 37 H 1.08996 * 109.47129 * 297.07635 * 24 23 12 38 38 H 1.09005 * 109.47116 * 57.07098 * 24 23 12 39 39 H 1.08992 * 109.46893 * 302.87156 * 25 23 12 40 40 H 1.08997 * 109.47084 * 62.87858 * 25 23 12 41 41 H 1.09005 * 109.46958 * 182.87463 * 25 23 12 42 42 H 1.08995 * 109.91435 * 35.16448 * 26 10 8 43 43 H 1.08998 * 109.91529 * 274.07561 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1017 0.0000 4 6 3.5531 0.7095 -0.0066 5 17 4.9377 1.7567 -0.0162 6 6 3.5782 -0.6891 -0.0046 7 6 2.2676 -1.1180 0.0032 8 6 1.8120 -2.5122 0.0078 9 8 0.6326 -2.7663 0.1677 10 7 2.6993 -3.5117 -0.1651 11 6 4.1362 -3.3848 -0.5131 12 6 4.3694 -4.5528 -1.5041 13 1 4.0378 -4.2839 -2.5071 14 7 5.7795 -4.9502 -1.5152 15 6 6.6444 -4.3800 -2.4105 16 1 6.2872 -3.6377 -3.1089 17 6 7.9806 -4.7562 -2.4206 18 7 8.4162 -5.6605 -1.5693 19 14 9.1605 -3.9789 -3.6426 20 1 8.4274 -2.9989 -4.4838 21 1 10.2483 -3.2850 -2.9075 22 1 9.7435 -5.0353 -4.5082 23 6 3.4874 -5.6804 -0.9198 24 6 4.3313 -6.6245 -0.0612 25 6 2.8003 -6.4576 -2.0446 26 6 2.4402 -4.9592 -0.0509 27 1 -0.3633 -0.0949 1.0233 28 1 -0.3634 0.9337 -0.4294 29 1 -0.3634 -0.8387 -0.5939 30 1 1.9088 2.1245 -0.0004 31 1 4.4582 -1.3152 -0.0090 32 1 4.7565 -3.5044 0.3751 33 1 4.3355 -2.4270 -0.9939 34 1 6.1002 -5.6171 -0.8881 35 1 9.3499 -5.9230 -1.5761 36 1 3.6878 -7.3827 0.3850 37 1 5.0836 -7.1077 -0.6846 38 1 4.8238 -6.0558 0.7275 39 1 2.2131 -5.7711 -2.6544 40 1 3.5545 -6.9410 -2.6655 41 1 2.1439 -7.2144 -1.6149 42 1 1.4375 -5.1865 -0.4125 43 1 2.5401 -5.2734 0.9881 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996026281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:34 Heat of formation + Delta-G solvation = 21.688356 kcal Electronic energy + Delta-G solvation = -26130.221006 eV Core-core repulsion = 22430.498482 eV Total energy + Delta-G solvation = -3699.722524 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.60586 -40.98548 -39.13037 -37.35904 -35.92686 -34.91842 -33.57258 -32.66351 -30.69925 -29.25919 -28.27731 -27.44828 -27.25786 -25.80645 -23.88714 -22.47025 -21.80154 -20.39247 -19.88851 -19.19434 -18.16498 -17.54309 -17.22876 -16.58026 -16.41901 -16.10046 -15.66166 -15.34035 -15.15641 -15.07292 -14.70753 -14.48486 -14.28565 -14.20235 -13.98627 -13.80378 -13.35133 -13.21638 -13.09407 -12.89495 -12.72302 -12.69131 -12.52799 -12.41802 -12.06803 -11.99582 -11.94421 -11.75220 -11.49034 -11.31339 -11.14224 -10.87979 -9.86695 -9.74106 -9.27655 -8.95386 -7.91406 -5.19147 0.28307 1.11296 1.39915 1.50199 1.52190 1.57831 1.60813 2.15924 2.27895 2.59790 3.30606 3.40810 3.70705 3.76470 3.87751 3.91204 4.00298 4.12069 4.20235 4.33458 4.38159 4.42655 4.48425 4.54752 4.64164 4.70358 4.78752 4.79106 4.86869 4.89010 4.97561 5.04975 5.12594 5.20230 5.30429 5.40086 5.43184 5.52430 5.59683 5.67126 6.04060 6.30847 6.40156 6.97095 7.39881 8.11621 8.37569 9.31677 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.009840 B = 0.004783 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.821787 B = 5853.034625 C = 8234.805431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.405 5.405 3 C 0.055 3.945 4 C -0.145 4.145 5 Cl -0.049 7.049 6 C -0.143 4.143 7 C -0.057 4.057 8 C 0.603 3.397 9 O -0.578 6.578 10 N -0.602 5.602 11 C 0.074 3.926 12 C 0.172 3.828 13 H 0.056 0.944 14 N -0.720 5.720 15 C -0.239 4.239 16 H 0.074 0.926 17 C -0.064 4.064 18 N -0.964 5.964 19 Si 0.962 3.038 20 H -0.269 1.269 21 H -0.295 1.295 22 H -0.296 1.296 23 C -0.081 4.081 24 C -0.128 4.128 25 C -0.126 4.126 26 C 0.124 3.876 27 H 0.086 0.914 28 H 0.124 0.876 29 H 0.081 0.919 30 H 0.219 0.781 31 H 0.157 0.843 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.385 0.615 35 H 0.250 0.750 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.443 10.581 4.199 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.078 5.078 3 C -0.083 4.083 4 C -0.178 4.178 5 Cl -0.021 7.021 6 C -0.169 4.169 7 C -0.171 4.171 8 C 0.394 3.606 9 O -0.461 6.461 10 N -0.334 5.334 11 C -0.051 4.051 12 C 0.061 3.939 13 H 0.074 0.926 14 N -0.361 5.361 15 C -0.371 4.371 16 H 0.092 0.908 17 C -0.257 4.257 18 N -0.614 5.614 19 Si 0.792 3.208 20 H -0.193 1.193 21 H -0.223 1.223 22 H -0.223 1.223 23 C -0.082 4.082 24 C -0.186 4.186 25 C -0.183 4.183 26 C 0.002 3.998 27 H 0.104 0.896 28 H 0.143 0.857 29 H 0.099 0.901 30 H 0.235 0.765 31 H 0.174 0.826 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.221 0.779 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.344 10.642 4.142 20.766 hybrid contribution 1.568 0.081 -0.344 1.608 sum -15.776 10.723 3.798 19.450 Atomic orbital electron populations 1.22443 0.73466 1.06082 1.04923 1.44015 1.08107 1.03927 1.51718 1.22292 0.87970 0.93223 1.04774 1.20092 0.89050 0.91064 1.17546 1.98326 1.40908 1.65110 1.97736 1.21937 0.95999 0.94342 1.04653 1.19769 0.90122 0.87909 1.19251 1.16599 0.84173 0.83225 0.76569 1.90746 1.16617 1.84943 1.53812 1.48390 1.10764 1.06538 1.67677 1.23895 0.79212 1.02334 0.99635 1.21406 0.84684 0.91845 0.95928 0.92577 1.42669 1.03555 1.48428 1.41494 1.19615 0.90077 1.16815 1.10581 0.90828 1.25372 0.98703 1.00355 1.01225 1.69786 1.15092 1.36020 1.40519 0.85247 0.79283 0.77587 0.78701 1.19299 1.22285 1.22330 1.21673 0.94786 0.95625 0.96152 1.21668 0.99374 0.98746 0.98780 1.21752 0.99830 0.99778 0.96971 1.22221 0.99365 0.77995 1.00207 0.89567 0.85735 0.90054 0.76456 0.82595 0.91267 0.89353 0.77884 0.94053 0.90382 0.93145 0.93324 0.92813 0.93225 0.90542 0.89994 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 10.34 127.77 1.32 2.41 16 2 N -0.41 -8.98 3.16 -534.17 -1.69 -10.67 16 3 C 0.06 1.06 11.35 83.48 0.95 2.01 16 4 C -0.15 -3.63 6.66 22.04 0.15 -3.49 16 5 Cl -0.05 -1.20 29.30 -2.72 -0.08 -1.28 16 6 C -0.14 -4.16 9.16 22.59 0.21 -3.96 16 7 C -0.06 -1.65 6.82 40.36 0.28 -1.37 16 8 C 0.60 19.33 7.83 86.44 0.68 20.00 16 9 O -0.58 -19.94 15.25 -4.35 -0.07 -20.01 16 10 N -0.60 -18.84 3.30 -813.42 -2.69 -21.53 16 11 C 0.07 2.52 5.27 86.68 0.46 2.98 16 12 C 0.17 6.39 3.16 46.20 0.15 6.53 16 13 H 0.06 2.19 7.81 -2.39 -0.02 2.17 16 14 N -0.72 -33.30 4.97 -317.19 -1.58 -34.87 16 15 C -0.24 -12.49 9.96 84.04 0.84 -11.65 16 16 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 17 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 18 N -0.96 -56.27 13.06 21.65 0.28 -55.99 16 19 Si 0.96 44.89 29.55 68.60 2.03 46.92 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 22 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 23 C -0.08 -2.43 0.95 -51.29 -0.05 -2.48 16 24 C -0.13 -3.89 7.02 71.98 0.51 -3.39 16 25 C -0.13 -3.41 8.23 71.98 0.59 -2.82 16 26 C 0.12 3.51 6.31 86.53 0.55 4.05 16 27 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.12 0.92 8.12 -2.39 -0.02 0.90 16 29 H 0.08 1.60 6.86 -2.39 -0.02 1.58 16 30 H 0.22 2.22 8.06 -2.90 -0.02 2.19 16 31 H 0.16 4.88 5.03 -2.91 -0.01 4.86 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.09 3.04 5.01 -2.39 -0.01 3.03 16 34 H 0.38 18.82 5.13 -92.71 -0.48 18.34 16 35 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.81 7.00 -2.39 -0.02 1.79 16 38 H 0.05 1.55 7.95 -2.38 -0.02 1.54 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.08 2.22 7.54 -2.39 -0.02 2.21 16 43 H 0.08 2.02 7.68 -2.39 -0.02 2.00 16 Total: -1.00 -65.10 359.64 3.84 -61.26 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.56 Total: 30.36 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 7.07 Total: 5.81 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -5.67 Total: -123.06 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.07 Total: -20.01 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -65.10 3.84 -61.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996026281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.948 kcal (2) G-P(sol) polarization free energy of solvation -65.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds