Wall clock time and date at job start Tue Mar 31 2020 14:06:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86802 * 119.99581 * 2 1
4 4 H 1.48502 * 109.46833 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47183 * 299.99457 * 3 2 1
6 6 H 1.48500 * 109.47259 * 59.99542 * 3 2 1
7 7 C 1.38809 * 120.00290 * 179.97438 * 2 1 3
8 8 H 1.08007 * 120.00158 * 197.38029 * 7 2 1
9 9 N 1.36941 * 120.00186 * 17.37867 * 7 2 1
10 10 C 1.46927 * 120.62489 * 27.65721 * 9 7 2
11 11 C 1.53200 * 108.76111 * 126.40559 * 10 9 7
12 12 C 1.53039 * 109.31092 * 54.65490 * 11 10 9
13 13 C 1.53040 * 109.53022 * 298.61238 * 12 11 10
14 14 H 1.09009 * 109.49705 * 301.42526 * 13 12 11
15 15 N 1.46496 * 109.50324 * 181.32578 * 13 12 11
16 16 C 1.34772 * 120.00306 * 155.00037 * 15 13 12
17 17 O 1.21556 * 119.99724 * 359.97438 * 16 15 13
18 18 C 1.47839 * 119.99930 * 180.02562 * 16 15 13
19 19 C 1.40022 * 120.55625 * 179.72501 * 18 16 15
20 20 C 1.38356 * 118.28809 * 179.73580 * 19 18 16
21 21 C 1.38362 * 119.30081 * 0.53505 * 20 19 18
22 22 C 1.50699 * 119.45951 * 179.74647 * 21 20 19
23 23 F 1.39897 * 109.47265 * 299.97980 * 22 21 20
24 24 F 1.39908 * 109.47084 * 59.97477 * 22 21 20
25 25 N 1.31918 * 121.07616 * 359.72313 * 21 20 19
26 26 C 1.31689 * 121.88374 * 0.02562 * 25 21 20
27 27 C 1.46914 * 120.63145 * 207.68085 * 9 7 2
28 28 H 0.96998 * 120.00359 * 0.02562 * 1 2 3
29 29 H 1.08995 * 109.58710 * 246.19755 * 10 9 7
30 30 H 1.08998 * 109.58751 * 6.62827 * 10 9 7
31 31 H 1.08994 * 109.50776 * 294.69361 * 11 10 9
32 32 H 1.08994 * 109.48272 * 174.59818 * 11 10 9
33 33 H 1.09000 * 109.45878 * 178.59534 * 12 11 10
34 34 H 1.09001 * 109.46168 * 58.62753 * 12 11 10
35 35 H 0.96997 * 119.99243 * 335.00030 * 15 13 12
36 36 H 1.08001 * 120.85874 * 359.97080 * 19 18 16
37 37 H 1.08001 * 120.35131 * 180.27618 * 20 19 18
38 38 H 1.09000 * 109.46942 * 179.97438 * 22 21 20
39 39 H 1.08001 * 119.71879 * 180.02562 * 26 25 21
40 40 H 1.09007 * 109.58897 * 113.80283 * 27 9 7
41 41 H 1.08997 * 109.59275 * 353.37370 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3465 0.0006
5 1 1.8914 2.3964 -1.2126
6 1 1.8912 2.3966 1.2124
7 6 2.0103 -1.2021 0.0005
8 1 3.0534 -1.2233 0.2799
9 7 1.3726 -2.3612 -0.3532
10 6 0.2281 -2.3347 -1.2741
11 6 0.5014 -3.3049 -2.4278
12 6 0.8190 -4.6900 -1.8598
13 6 2.0746 -4.6101 -0.9885
14 1 2.9086 -4.2401 -1.5852
15 7 2.3962 -5.9423 -0.4707
16 6 3.6632 -6.2422 -0.1225
17 8 4.5391 -5.4074 -0.2384
18 6 3.9877 -7.5867 0.3996
19 6 5.3011 -7.9127 0.7595
20 6 5.5510 -9.1828 1.2479
21 6 4.5075 -10.0852 1.3535
22 6 4.7768 -11.4714 1.8797
23 9 5.7042 -12.1126 1.0515
24 9 5.2919 -11.3857 3.1776
25 7 3.2806 -9.7517 1.0015
26 6 2.9918 -8.5541 0.5361
27 6 1.8195 -3.6546 0.1814
28 1 -0.4850 0.8400 -0.0004
29 1 -0.6741 -2.6412 -0.7447
30 1 0.0988 -1.3264 -1.6675
31 1 1.3502 -2.9473 -3.0107
32 1 -0.3792 -3.3670 -3.0670
33 1 0.9895 -5.3882 -2.6793
34 1 -0.0202 -5.0363 -1.2565
35 1 1.6972 -6.6084 -0.3785
36 1 6.0977 -7.1900 0.6620
37 1 6.5509 -9.4682 1.5398
38 1 3.8477 -12.0413 1.8943
39 1 1.9749 -8.3185 0.2587
40 1 1.0470 -4.0687 0.8296
41 1 2.7401 -3.5172 0.7485
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001007473287.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:06:04
Heat of formation + Delta-G solvation = -78.717037 kcal
Electronic energy + Delta-G solvation = -26854.687365 eV
Core-core repulsion = 22598.814255 eV
Total energy + Delta-G solvation = -4255.873109 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.134 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-49.49011 -47.47483 -41.01554 -39.39113 -37.40566 -34.55357 -33.26332 -32.86399
-32.17004 -30.51501 -29.04886 -27.26562 -25.33171 -24.29822 -23.65642 -22.22144
-21.96265 -20.55987 -19.56845 -18.45656 -18.09753 -17.72857 -17.59627 -16.88341
-16.54931 -15.48815 -15.37295 -15.18094 -14.84814 -14.55633 -14.47029 -14.15426
-13.87994 -13.83637 -13.62832 -13.60453 -13.43551 -13.15149 -12.90422 -12.45931
-12.44565 -11.89606 -11.76922 -11.16773 -10.96376 -10.83240 -10.49554 -10.41833
-10.31184 -10.25863 -9.99299 -9.95188 -9.78951 -9.69986 -9.64328 -8.96807
-8.45122 -6.71806 -5.81516 -3.23798 0.01540 0.69042 2.55194 2.79409
3.05007 3.37186 3.39385 3.45374 3.49145 3.67252 3.87999 4.19596
4.31085 4.46108 4.51363 4.52581 4.60275 4.77515 5.02955 5.20381
5.32719 5.43269 5.48102 5.54680 5.60025 5.64308 5.92289 5.99902
6.05641 6.16825 6.43457 6.53326 6.56875 6.61768 6.76640 6.89248
7.15251 7.31348 7.50552 7.60968 7.80657 8.15920 8.42535 9.18852
9.80970 10.36065 11.27231
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.025109 B = 0.002392 C = 0.002281
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1114.872178 B =11704.183452 C =12269.690571
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.002 3.998
3 Si 0.902 3.098
4 H -0.276 1.276
5 H -0.288 1.288
6 H -0.290 1.290
7 C -0.251 4.251
8 H 0.067 0.933
9 N -0.587 5.587
10 C 0.166 3.834
11 C -0.139 4.139
12 C -0.115 4.115
13 C 0.125 3.875
14 H 0.089 0.911
15 N -0.712 5.712
16 C 0.556 3.444
17 O -0.522 6.522
18 C -0.156 4.156
19 C -0.017 4.017
20 C -0.137 4.137
21 C 0.062 3.938
22 C 0.325 3.675
23 F -0.192 7.192
24 F -0.191 7.191
25 N -0.460 5.460
26 C 0.135 3.865
27 C 0.142 3.858
28 H 0.253 0.747
29 H 0.020 0.980
30 H 0.090 0.910
31 H 0.058 0.942
32 H 0.055 0.945
33 H 0.052 0.948
34 H 0.060 0.940
35 H 0.394 0.606
36 H 0.158 0.842
37 H 0.149 0.851
38 H 0.134 0.866
39 H 0.169 0.831
40 H 0.018 0.982
41 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.335 -22.659 -0.048 23.279
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.196 4.196
3 Si 0.732 3.268
4 H -0.201 1.201
5 H -0.215 1.215
6 H -0.217 1.217
7 C -0.380 4.380
8 H 0.085 0.915
9 N -0.310 5.310
10 C 0.041 3.959
11 C -0.179 4.179
12 C -0.153 4.153
13 C 0.020 3.980
14 H 0.107 0.893
15 N -0.363 5.363
16 C 0.340 3.660
17 O -0.399 6.399
18 C -0.161 4.161
19 C -0.044 4.044
20 C -0.157 4.157
21 C -0.076 4.076
22 C 0.270 3.730
23 F -0.173 7.173
24 F -0.173 7.173
25 N -0.169 5.169
26 C -0.024 4.024
27 C 0.014 3.986
28 H 0.063 0.937
29 H 0.038 0.962
30 H 0.108 0.892
31 H 0.076 0.924
32 H 0.074 0.926
33 H 0.070 0.930
34 H 0.079 0.921
35 H 0.229 0.771
36 H 0.175 0.825
37 H 0.166 0.834
38 H 0.151 0.849
39 H 0.186 0.814
40 H 0.036 0.964
41 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 5.230 -22.501 -0.030 23.101
hybrid contribution 0.755 1.105 0.037 1.339
sum 5.984 -21.396 0.008 22.217
Atomic orbital electron populations
1.70044 1.05254 1.25452 1.54040 1.25024 0.95303 0.98436 1.00848
0.86216 0.79525 0.83783 0.77264 1.20141 1.21498 1.21715 1.19261
0.92855 0.84631 1.41295 0.91482 1.44009 1.35625 1.00998 1.50367
1.20864 0.88562 0.98654 0.87866 1.22180 1.00539 0.95046 1.00158
1.21690 0.96596 0.98794 0.98266 1.21867 0.98129 0.80651 0.97388
0.89256 1.46084 1.08616 1.16278 1.65292 1.17914 0.83342 0.86237
0.78493 1.90841 1.46876 1.48961 1.53208 1.21331 0.95669 0.96226
1.02859 1.21826 0.96383 0.95709 0.90450 1.21927 1.00829 0.93714
0.99262 1.21662 0.90614 0.96200 0.99138 1.20108 0.89987 0.89852
0.73058 1.93040 1.69478 1.82528 1.72286 1.93048 1.89100 1.96950
1.38170 1.67212 1.20013 1.19730 1.09924 1.22968 0.99457 0.87130
0.92886 1.21179 0.98033 0.86889 0.92478 0.93668 0.96225 0.89181
0.92357 0.92593 0.92960 0.92097 0.77117 0.82465 0.83364 0.84877
0.81360 0.96377 0.92345
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.96 11.19 55.49 0.62 -25.34 16
2 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16
3 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16
4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16
5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
7 C -0.25 -6.95 9.59 -15.06 -0.14 -7.09 16
8 H 0.07 1.88 7.89 -52.48 -0.41 1.46 16
9 N -0.59 -14.58 2.99 -172.32 -0.52 -15.09 16
10 C 0.17 3.82 5.31 -3.71 -0.02 3.80 16
11 C -0.14 -2.48 6.08 -26.61 -0.16 -2.64 16
12 C -0.12 -1.73 5.35 -26.69 -0.14 -1.87 16
13 C 0.12 2.10 2.60 -67.81 -0.18 1.92 16
14 H 0.09 1.73 7.58 -51.92 -0.39 1.34 16
15 N -0.71 -9.28 5.03 -54.63 -0.28 -9.55 16
16 C 0.56 7.88 7.75 -12.33 -0.10 7.78 16
17 O -0.52 -9.60 16.08 5.32 0.09 -9.51 16
18 C -0.16 -1.72 5.89 -104.82 -0.62 -2.34 16
19 C -0.02 -0.17 9.72 -38.87 -0.38 -0.55 16
20 C -0.14 -1.21 9.60 -39.49 -0.38 -1.59 16
21 C 0.06 0.57 6.28 -82.51 -0.52 0.05 16
22 C 0.32 2.42 5.54 36.01 0.20 2.62 16
23 F -0.19 -1.62 17.25 2.25 0.04 -1.58 16
24 F -0.19 -1.66 17.25 2.25 0.04 -1.62 16
25 N -0.46 -4.45 10.23 -9.14 -0.09 -4.54 16
26 C 0.13 1.25 10.71 -17.14 -0.18 1.06 16
27 C 0.14 2.98 6.09 -3.71 -0.02 2.96 16
28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16
29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
30 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16
31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16
34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
35 H 0.39 3.73 6.67 -40.82 -0.27 3.45 16
36 H 0.16 1.53 7.74 -52.49 -0.41 1.13 16
37 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16
38 H 0.13 0.67 8.10 -51.93 -0.42 0.25 16
39 H 0.17 1.08 6.42 -52.49 -0.34 0.75 16
40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
41 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16
LS Contribution 349.94 15.07 5.27 5.27
Total: -1.00 -32.52 349.94 -7.65 -40.16
By element:
Atomic # 1 Polarization: 6.02 SS G_CDS: -5.06 Total: 0.95 kcal
Atomic # 6 Polarization: 6.79 SS G_CDS: -2.73 Total: 4.06 kcal
Atomic # 7 Polarization: -54.26 SS G_CDS: -0.26 Total: -54.53 kcal
Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal
Atomic # 9 Polarization: -3.28 SS G_CDS: 0.08 Total: -3.21 kcal
Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -32.52 -7.65 -40.16 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001007473287.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.555 kcal
(2) G-P(sol) polarization free energy of solvation -32.517 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.071 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.717 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds