Wall clock time and date at job start Tue Mar 31 2020 14:06:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86802 * 119.99581 * 2 1
4 4 H 1.48502 * 109.46833 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47183 * 299.99457 * 3 2 1
6 6 H 1.48500 * 109.47259 * 59.99542 * 3 2 1
7 7 C 1.38809 * 120.00290 * 179.97438 * 2 1 3
8 8 H 1.08007 * 120.00158 * 197.38029 * 7 2 1
9 9 N 1.36941 * 120.00186 * 17.37867 * 7 2 1
10 10 C 1.46927 * 120.62489 * 27.65721 * 9 7 2
11 11 C 1.53200 * 108.76111 * 126.40559 * 10 9 7
12 12 C 1.53039 * 109.31092 * 54.65490 * 11 10 9
13 13 C 1.53040 * 109.53022 * 298.61238 * 12 11 10
14 14 H 1.09009 * 109.49705 * 301.42526 * 13 12 11
15 15 N 1.46496 * 109.50324 * 181.32578 * 13 12 11
16 16 C 1.34772 * 120.00306 * 155.00037 * 15 13 12
17 17 O 1.21556 * 119.99724 * 359.97438 * 16 15 13
18 18 C 1.47839 * 119.99930 * 180.02562 * 16 15 13
19 19 C 1.40022 * 120.55625 * 179.72501 * 18 16 15
20 20 C 1.38356 * 118.28809 * 179.73580 * 19 18 16
21 21 C 1.38362 * 119.30081 * 0.53505 * 20 19 18
22 22 C 1.50699 * 119.45951 * 179.74647 * 21 20 19
23 23 F 1.39897 * 109.47265 * 299.97980 * 22 21 20
24 24 F 1.39908 * 109.47084 * 59.97477 * 22 21 20
25 25 N 1.31918 * 121.07616 * 359.72313 * 21 20 19
26 26 C 1.31689 * 121.88374 * 0.02562 * 25 21 20
27 27 C 1.46914 * 120.63145 * 207.68085 * 9 7 2
28 28 H 0.96998 * 120.00359 * 0.02562 * 1 2 3
29 29 H 1.08995 * 109.58710 * 246.19755 * 10 9 7
30 30 H 1.08998 * 109.58751 * 6.62827 * 10 9 7
31 31 H 1.08994 * 109.50776 * 294.69361 * 11 10 9
32 32 H 1.08994 * 109.48272 * 174.59818 * 11 10 9
33 33 H 1.09000 * 109.45878 * 178.59534 * 12 11 10
34 34 H 1.09001 * 109.46168 * 58.62753 * 12 11 10
35 35 H 0.96997 * 119.99243 * 335.00030 * 15 13 12
36 36 H 1.08001 * 120.85874 * 359.97080 * 19 18 16
37 37 H 1.08001 * 120.35131 * 180.27618 * 20 19 18
38 38 H 1.09000 * 109.46942 * 179.97438 * 22 21 20
39 39 H 1.08001 * 119.71879 * 180.02562 * 26 25 21
40 40 H 1.09007 * 109.58897 * 113.80283 * 27 9 7
41 41 H 1.08997 * 109.59275 * 353.37370 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3465 0.0006
5 1 1.8914 2.3964 -1.2126
6 1 1.8912 2.3966 1.2124
7 6 2.0103 -1.2021 0.0005
8 1 3.0534 -1.2233 0.2799
9 7 1.3726 -2.3612 -0.3532
10 6 0.2281 -2.3347 -1.2741
11 6 0.5014 -3.3049 -2.4278
12 6 0.8190 -4.6900 -1.8598
13 6 2.0746 -4.6101 -0.9885
14 1 2.9086 -4.2401 -1.5852
15 7 2.3962 -5.9423 -0.4707
16 6 3.6632 -6.2422 -0.1225
17 8 4.5391 -5.4074 -0.2384
18 6 3.9877 -7.5867 0.3996
19 6 5.3011 -7.9127 0.7595
20 6 5.5510 -9.1828 1.2479
21 6 4.5075 -10.0852 1.3535
22 6 4.7768 -11.4714 1.8797
23 9 5.7042 -12.1126 1.0515
24 9 5.2919 -11.3857 3.1776
25 7 3.2806 -9.7517 1.0015
26 6 2.9918 -8.5541 0.5361
27 6 1.8195 -3.6546 0.1814
28 1 -0.4850 0.8400 -0.0004
29 1 -0.6741 -2.6412 -0.7447
30 1 0.0988 -1.3264 -1.6675
31 1 1.3502 -2.9473 -3.0107
32 1 -0.3792 -3.3670 -3.0670
33 1 0.9895 -5.3882 -2.6793
34 1 -0.0202 -5.0363 -1.2565
35 1 1.6972 -6.6084 -0.3785
36 1 6.0977 -7.1900 0.6620
37 1 6.5509 -9.4682 1.5398
38 1 3.8477 -12.0413 1.8943
39 1 1.9749 -8.3185 0.2587
40 1 1.0470 -4.0687 0.8296
41 1 2.7401 -3.5172 0.7485
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001007473287.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:06:04
Heat of formation + Delta-G solvation = -100.075101 kcal
Electronic energy + Delta-G solvation = -26855.613520 eV
Core-core repulsion = 22598.814255 eV
Total energy + Delta-G solvation = -4256.799264 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.134 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-50.10657 -48.09816 -41.89347 -40.51633 -38.93276 -36.06891 -34.42637 -33.93975
-33.21882 -32.34726 -30.45335 -28.12309 -27.26445 -25.04755 -24.63453 -23.88657
-23.27450 -21.71967 -21.09670 -19.31042 -18.82950 -18.65867 -18.50000 -18.34433
-17.50935 -16.95232 -16.46725 -16.35301 -16.13085 -15.80696 -15.46294 -15.36531
-15.11552 -14.90836 -14.61171 -14.51735 -14.46440 -14.35622 -14.18244 -14.03005
-13.57007 -13.40816 -13.04442 -12.78423 -12.57624 -12.38317 -12.12493 -11.98014
-11.81102 -11.62790 -11.33913 -11.30952 -11.20284 -10.76846 -10.64634 -10.56041
-10.18054 -8.70944 -7.91952 -5.37049 -0.78535 -0.04217 1.42684 1.44784
1.55721 1.58407 1.91992 2.16832 2.48825 2.52129 3.12133 3.22374
3.23076 3.45607 3.58126 3.64076 3.74291 3.83456 3.89314 3.93065
4.10637 4.11239 4.24484 4.39235 4.47871 4.55027 4.69476 4.80936
4.85037 4.91186 5.01713 5.11507 5.14296 5.19635 5.27322 5.41572
5.54155 5.62978 5.76957 6.35461 6.39756 6.45816 7.08758 7.12629
7.81666 8.30637 9.13764
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.025109 B = 0.002392 C = 0.002281
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1114.872178 B =11704.183452 C =12269.690571
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C -0.044 4.044
3 Si 0.964 3.036
4 H -0.274 1.274
5 H -0.284 1.284
6 H -0.289 1.289
7 C -0.266 4.266
8 H 0.053 0.947
9 N -0.607 5.607
10 C 0.170 3.830
11 C -0.130 4.130
12 C -0.105 4.105
13 C 0.141 3.859
14 H 0.062 0.938
15 N -0.697 5.697
16 C 0.558 3.442
17 O -0.573 6.573
18 C -0.170 4.170
19 C -0.023 4.023
20 C -0.139 4.139
21 C 0.061 3.939
22 C 0.327 3.673
23 F -0.198 7.198
24 F -0.199 7.199
25 N -0.465 5.465
26 C 0.145 3.855
27 C 0.144 3.856
28 H 0.252 0.748
29 H 0.006 0.994
30 H 0.054 0.946
31 H 0.047 0.953
32 H 0.085 0.915
33 H 0.090 0.910
34 H 0.079 0.921
35 H 0.416 0.584
36 H 0.154 0.846
37 H 0.167 0.833
38 H 0.163 0.837
39 H 0.198 0.802
40 H 0.024 0.976
41 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.812 -25.165 -0.549 25.627
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.574 5.574
2 C -0.240 4.240
3 Si 0.792 3.208
4 H -0.199 1.199
5 H -0.210 1.210
6 H -0.216 1.216
7 C -0.396 4.396
8 H 0.071 0.929
9 N -0.331 5.331
10 C 0.044 3.956
11 C -0.169 4.169
12 C -0.143 4.143
13 C 0.035 3.965
14 H 0.080 0.920
15 N -0.348 5.348
16 C 0.345 3.655
17 O -0.452 6.452
18 C -0.175 4.175
19 C -0.049 4.049
20 C -0.158 4.158
21 C -0.078 4.078
22 C 0.273 3.727
23 F -0.179 7.179
24 F -0.180 7.180
25 N -0.174 5.174
26 C -0.014 4.014
27 C 0.017 3.983
28 H 0.061 0.939
29 H 0.025 0.975
30 H 0.072 0.928
31 H 0.066 0.934
32 H 0.104 0.896
33 H 0.109 0.891
34 H 0.098 0.902
35 H 0.255 0.745
36 H 0.171 0.829
37 H 0.184 0.816
38 H 0.180 0.820
39 H 0.215 0.785
40 H 0.042 0.958
41 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges 4.687 -25.074 -0.531 25.514
hybrid contribution 0.955 1.821 0.263 2.073
sum 5.642 -23.254 -0.268 23.930
Atomic orbital electron populations
1.70166 1.06345 1.25941 1.54989 1.25703 0.96112 1.01177 1.01018
0.85269 0.78384 0.80010 0.77162 1.19868 1.21005 1.21564 1.19419
0.92597 0.86350 1.41267 0.92887 1.44235 1.36033 1.01511 1.51343
1.20748 0.87539 0.98249 0.89018 1.22013 1.01433 0.95276 0.98208
1.21632 0.95778 0.97711 0.99179 1.21342 0.98342 0.81401 0.95417
0.92002 1.45785 1.09132 1.15249 1.64682 1.18356 0.82890 0.86936
0.77363 1.90822 1.48336 1.50793 1.55293 1.21077 0.96704 0.94969
1.04789 1.21918 0.96213 0.96336 0.90436 1.22121 1.01875 0.93005
0.98828 1.22047 0.90541 0.96997 0.98168 1.20333 0.90764 0.89228
0.72376 1.93032 1.69875 1.82495 1.72473 1.93037 1.89302 1.96941
1.38702 1.67316 1.20148 1.19644 1.10263 1.23354 1.00143 0.86373
0.91549 1.21227 0.96563 0.86492 0.94057 0.93857 0.97546 0.92787
0.93402 0.89645 0.89141 0.90207 0.74523 0.82860 0.81558 0.82006
0.78497 0.95826 0.95164
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.73 11.19 21.65 0.24 -54.49 16
2 C -0.04 -2.52 4.91 84.86 0.42 -2.10 16
3 Si 0.96 45.93 29.59 68.60 2.03 47.96 16
4 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16
5 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16
6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16
7 C -0.27 -15.27 9.59 84.03 0.81 -14.46 16
8 H 0.05 3.11 7.89 -2.91 -0.02 3.09 16
9 N -0.61 -30.98 2.99 -699.09 -2.09 -33.07 16
10 C 0.17 7.89 5.31 86.37 0.46 8.35 16
11 C -0.13 -4.42 6.08 30.67 0.19 -4.23 16
12 C -0.11 -2.83 5.35 30.62 0.16 -2.67 16
13 C 0.14 4.62 2.60 45.07 0.12 4.74 16
14 H 0.06 2.42 7.58 -2.38 -0.02 2.40 16
15 N -0.70 -16.91 5.03 -445.03 -2.24 -19.15 16
16 C 0.56 15.52 7.75 86.79 0.67 16.19 16
17 O -0.57 -21.66 16.08 -3.89 -0.06 -21.73 16
18 C -0.17 -3.54 5.89 -20.00 -0.12 -3.66 16
19 C -0.02 -0.44 9.72 22.73 0.22 -0.22 16
20 C -0.14 -2.22 9.60 22.33 0.21 -2.00 16
21 C 0.06 0.96 6.28 42.57 0.27 1.23 16
22 C 0.33 4.02 5.54 71.24 0.39 4.42 16
23 F -0.20 -2.89 17.25 44.97 0.78 -2.11 16
24 F -0.20 -3.02 17.25 44.97 0.78 -2.24 16
25 N -0.47 -7.64 10.23 -182.82 -1.87 -9.51 16
26 C 0.14 2.28 10.71 85.02 0.91 3.19 16
27 C 0.14 6.12 6.09 86.37 0.53 6.65 16
28 H 0.25 14.28 8.31 -92.71 -0.77 13.50 16
29 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16
30 H 0.05 2.89 6.04 -2.39 -0.01 2.87 16
31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16
32 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16
33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16
34 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16
35 H 0.42 6.43 6.67 -92.71 -0.62 5.81 16
36 H 0.15 3.05 7.74 -2.91 -0.02 3.03 16
37 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16
38 H 0.16 1.09 8.10 -2.39 -0.02 1.07 16
39 H 0.20 1.75 6.42 -2.91 -0.02 1.73 16
40 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16
41 H 0.03 1.42 7.93 -2.39 -0.02 1.40 16
Total: -1.00 -73.73 349.94 3.25 -70.48
By element:
Atomic # 1 Polarization: 7.98 SS G_CDS: 0.46 Total: 8.43 kcal
Atomic # 6 Polarization: 10.19 SS G_CDS: 5.24 Total: 15.43 kcal
Atomic # 7 Polarization: -110.26 SS G_CDS: -5.96 Total: -116.22 kcal
Atomic # 8 Polarization: -21.66 SS G_CDS: -0.06 Total: -21.73 kcal
Atomic # 9 Polarization: -5.91 SS G_CDS: 1.55 Total: -4.36 kcal
Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal
Total: -73.73 3.25 -70.48 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001007473287.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.594 kcal
(2) G-P(sol) polarization free energy of solvation -73.732 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.326 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.481 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds