Wall clock time and date at job start Tue Mar 31 2020 13:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99708 * 2 1 4 4 C 1.50705 * 109.47248 * 180.02562 * 3 2 1 5 5 N 1.29422 * 124.80942 * 89.97115 * 4 3 2 6 6 C 1.30945 * 117.36661 * 179.73139 * 5 4 3 7 7 C 1.35668 * 114.18446 * 0.52625 * 6 5 4 8 8 C 1.46686 * 126.12522 * 179.78622 * 7 6 5 9 9 O 1.21690 * 120.00183 * 359.71192 * 8 7 6 10 10 N 1.34773 * 119.99906 * 179.71323 * 8 7 6 11 11 C 1.46501 * 119.99959 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.49676 * 35.06874 * 11 10 8 13 13 C 1.53041 * 109.49697 * 155.13264 * 11 10 8 14 14 C 1.53036 * 109.53734 * 181.28759 * 13 11 10 15 15 C 1.53189 * 109.33865 * 298.67795 * 14 13 11 16 16 N 1.46927 * 108.77536 * 54.62197 * 15 14 13 17 17 C 1.36943 * 120.63244 * 126.41224 * 16 15 14 18 18 H 1.08003 * 119.99728 * 332.60653 * 17 16 15 19 19 C 1.38803 * 120.00050 * 152.60283 * 17 16 15 20 20 N 1.31627 * 119.99924 * 159.35284 * 19 17 16 21 21 Si 1.86797 * 120.00118 * 339.35942 * 19 17 16 22 22 H 1.48495 * 109.47249 * 92.92243 * 21 19 17 23 23 H 1.48505 * 109.47030 * 212.92214 * 21 19 17 24 24 H 1.48494 * 109.47189 * 332.91628 * 21 19 17 25 25 C 1.46923 * 118.73975 * 306.39124 * 16 15 14 26 26 S 1.70960 * 124.79796 * 269.99978 * 4 3 2 27 27 H 1.09000 * 109.46951 * 300.00104 * 1 2 3 28 28 H 1.08996 * 109.47173 * 60.00366 * 1 2 3 29 29 H 1.09001 * 109.46771 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47500 * 59.99989 * 3 2 1 31 31 H 1.09007 * 109.47242 * 299.99486 * 3 2 1 32 32 H 1.07993 * 122.90841 * 180.34608 * 6 5 4 33 33 H 0.96998 * 120.00176 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.43297 * 61.27959 * 13 11 10 35 35 H 1.09002 * 109.48195 * 301.32100 * 13 11 10 36 36 H 1.09010 * 109.49484 * 178.71274 * 14 13 11 37 37 H 1.08994 * 109.50217 * 58.65246 * 14 13 11 38 38 H 1.09002 * 109.58854 * 174.41052 * 15 14 13 39 39 H 1.09001 * 109.59109 * 294.69523 * 15 14 13 40 40 H 0.96999 * 119.99921 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.58928 * 173.39180 * 25 16 15 42 42 H 1.09003 * 109.58804 * 293.82312 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2486 1.1280 -1.0636 6 6 5.5434 1.0310 -0.8945 7 6 5.9331 0.9943 0.4045 8 6 7.3127 0.8847 0.8907 9 8 8.2332 0.8119 0.0981 10 7 7.5608 0.8646 2.2152 11 6 8.9386 0.7546 2.7009 12 1 9.6055 1.2938 2.0282 13 6 9.0347 1.3553 4.1052 14 6 10.4801 1.2699 4.6005 15 6 10.9057 -0.2000 4.6725 16 7 10.6796 -0.8225 3.3610 17 6 11.6917 -1.4852 2.7194 18 1 12.7196 -1.2094 2.9035 19 6 11.3967 -2.5113 1.8324 20 7 12.2808 -2.8730 0.9269 21 14 9.7448 -3.3786 1.9236 22 1 8.7886 -2.7211 0.9970 23 1 9.9111 -4.8022 1.5351 24 1 9.2215 -3.3022 3.3112 25 6 9.3467 -0.7211 2.7513 26 16 4.4857 1.1094 1.4028 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 6.2406 0.9816 -1.7178 33 1 6.8271 0.9230 2.8470 34 1 8.3854 0.8002 4.7822 35 1 8.7218 2.3990 4.0764 36 1 10.5522 1.7185 5.5914 37 1 11.1333 1.8044 3.9109 38 1 11.9633 -0.2621 4.9290 39 1 10.3151 -0.7147 5.4304 40 1 12.0748 -3.5903 0.3073 41 1 9.3756 -1.1270 1.7401 42 1 8.6272 -1.2789 3.3507 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009745499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:58 Heat of formation + Delta-G solvation = -3.791589 kcal Electronic energy + Delta-G solvation = -25227.407323 eV Core-core repulsion = 21528.623612 eV Total energy + Delta-G solvation = -3698.783711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.35317 -39.44219 -38.20934 -37.52724 -34.40268 -32.76633 -31.88719 -30.71227 -29.73332 -28.33648 -26.59194 -25.30697 -24.42814 -23.13158 -22.28416 -21.07230 -20.09773 -19.35711 -18.70499 -17.12538 -17.05131 -16.84131 -16.26557 -15.87661 -15.64104 -15.25099 -15.02918 -14.63340 -14.25392 -14.03359 -13.89716 -13.72058 -13.20081 -13.11333 -12.83443 -12.82196 -12.39263 -12.21648 -11.94063 -11.84179 -11.60677 -11.15280 -10.76762 -10.63430 -10.37782 -10.27237 -10.23393 -10.12483 -9.80830 -9.79550 -9.73972 -9.45416 -9.27140 -8.96334 -8.51587 -6.96862 -5.91619 -3.28211 -0.06085 0.85564 1.28262 2.21249 3.06739 3.21850 3.29792 3.40568 3.50622 3.53261 3.91916 4.42054 4.57632 4.70065 4.80343 4.84962 4.88383 4.94977 5.01656 5.07401 5.17866 5.22825 5.23229 5.44372 5.48323 5.78042 5.85858 5.91091 5.99723 6.17031 6.23730 6.40101 6.45888 6.51659 6.58886 6.62733 6.74214 6.90290 7.31008 7.53899 7.97650 8.23779 8.36177 8.95400 9.74967 10.10235 11.24132 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.003358 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.647680 B = 8335.996173 C = 9020.658631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.139 3.861 4 C 0.043 3.957 5 N -0.457 5.457 6 C 0.113 3.887 7 C -0.273 4.273 8 C 0.587 3.413 9 O -0.507 6.507 10 N -0.718 5.718 11 C 0.126 3.874 12 H 0.096 0.904 13 C -0.117 4.117 14 C -0.132 4.132 15 C 0.145 3.855 16 N -0.600 5.600 17 C -0.264 4.264 18 H 0.088 0.912 19 C 0.029 3.971 20 N -0.903 5.903 21 Si 0.878 3.122 22 H -0.287 1.287 23 H -0.302 1.302 24 H -0.271 1.271 25 C 0.119 3.881 26 S 0.187 5.813 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.193 0.807 33 H 0.392 0.608 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.023 0.977 40 H 0.263 0.737 41 H 0.080 0.920 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.478 12.108 4.162 26.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.059 3.941 4 C -0.232 4.232 5 N -0.172 5.172 6 C -0.044 4.044 7 C -0.398 4.398 8 C 0.371 3.629 9 O -0.383 6.383 10 N -0.369 5.369 11 C 0.021 3.979 12 H 0.114 0.886 13 C -0.155 4.155 14 C -0.172 4.172 15 C 0.019 3.981 16 N -0.324 5.324 17 C -0.392 4.392 18 H 0.105 0.895 19 C -0.171 4.171 20 N -0.545 5.545 21 Si 0.709 3.291 22 H -0.214 1.214 23 H -0.230 1.230 24 H -0.197 1.197 25 C -0.008 4.008 26 S 0.443 5.557 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.210 0.790 33 H 0.225 0.775 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -23.112 11.788 4.060 26.260 hybrid contribution -0.974 -0.453 -0.553 1.208 sum -24.086 11.335 3.507 26.850 Atomic orbital electron populations 1.22823 0.79812 1.03485 1.00363 1.87990 1.20449 1.26061 1.95526 1.20821 0.84278 0.86282 1.02718 1.26893 1.00569 1.04117 0.91600 1.66150 1.04951 1.14957 1.31153 1.22233 0.90475 0.95921 0.95810 1.26067 0.98357 1.17423 0.97945 1.16725 0.85707 0.77435 0.83055 1.90932 1.43854 1.48601 1.54877 1.46057 1.10300 1.74709 1.05827 1.21881 0.80563 1.00033 0.95464 0.88610 1.21691 0.98597 0.99859 0.95344 1.22000 0.95117 0.99788 1.00260 1.20991 0.99640 0.90310 0.87171 1.44282 1.08272 1.63061 1.16785 1.18883 0.87979 1.11201 1.21172 0.89492 1.25253 0.96891 0.97575 0.97334 1.69832 1.35787 1.30944 1.17971 0.87003 0.85298 0.78706 0.78142 1.21444 1.23011 1.19655 1.21712 0.87552 0.92634 0.98878 1.83732 0.96760 1.64140 1.11099 0.93616 0.93505 0.89005 0.90604 0.89707 0.79010 0.77477 0.92021 0.92317 0.92026 0.91541 0.91559 0.95864 0.92703 0.90197 0.95738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.65 10.69 -35.23 -0.38 -4.03 16 3 C 0.14 1.11 6.51 36.01 0.23 1.34 16 4 C 0.04 0.48 7.02 -13.29 -0.09 0.39 16 5 N -0.46 -6.13 10.51 -11.50 -0.12 -6.25 16 6 C 0.11 1.60 11.09 -18.85 -0.21 1.39 16 7 C -0.27 -3.93 6.48 -37.09 -0.24 -4.17 16 8 C 0.59 10.33 7.75 -12.85 -0.10 10.23 16 9 O -0.51 -11.16 16.53 5.20 0.09 -11.07 16 10 N -0.72 -11.30 5.08 -54.99 -0.28 -11.58 16 11 C 0.13 2.30 2.60 -67.81 -0.18 2.12 16 12 H 0.10 2.00 7.58 -51.93 -0.39 1.60 16 13 C -0.12 -1.68 5.36 -26.69 -0.14 -1.83 16 14 C -0.13 -2.03 6.08 -26.62 -0.16 -2.19 16 15 C 0.14 2.77 6.52 -3.71 -0.02 2.75 16 16 N -0.60 -14.51 2.77 -172.32 -0.48 -14.99 16 17 C -0.26 -7.59 10.03 -15.06 -0.15 -7.74 16 18 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16 19 C 0.03 0.88 5.23 -17.43 -0.09 0.79 16 20 N -0.90 -28.76 13.97 55.49 0.78 -27.98 16 21 Si 0.88 23.62 24.34 -169.99 -4.14 19.48 16 22 H -0.29 -7.79 6.62 56.52 0.37 -7.42 16 23 H -0.30 -8.17 7.11 56.52 0.40 -7.77 16 24 H -0.27 -7.03 6.64 56.52 0.38 -6.66 16 25 C 0.12 2.71 3.78 -3.71 -0.01 2.70 16 26 S 0.19 1.95 22.31 -107.50 -2.40 -0.45 16 27 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.19 2.61 8.06 -52.49 -0.42 2.19 16 33 H 0.39 4.79 7.79 -40.82 -0.32 4.48 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 41 H 0.08 2.13 4.50 -51.93 -0.23 1.89 16 42 H 0.02 0.55 7.08 -51.93 -0.37 0.18 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -36.27 356.73 -7.60 -43.87 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.99 Total: 0.57 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -0.06 Total: 7.06 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.10 Total: -60.81 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.29 Total: -15.10 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -4.14 Total: 19.48 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.40 Total: -0.45 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.27 -7.60 -43.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009745499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.077 kcal (2) G-P(sol) polarization free energy of solvation -36.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds