Wall clock time and date at job start Tue Mar 31 2020 13:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99708 * 2 1 4 4 C 1.50705 * 109.47248 * 180.02562 * 3 2 1 5 5 N 1.29422 * 124.80942 * 89.97115 * 4 3 2 6 6 C 1.30945 * 117.36661 * 179.73139 * 5 4 3 7 7 C 1.35668 * 114.18446 * 0.52625 * 6 5 4 8 8 C 1.46686 * 126.12522 * 179.78622 * 7 6 5 9 9 O 1.21690 * 120.00183 * 359.71192 * 8 7 6 10 10 N 1.34773 * 119.99906 * 179.71323 * 8 7 6 11 11 C 1.46501 * 119.99959 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.49676 * 35.06874 * 11 10 8 13 13 C 1.53041 * 109.49697 * 155.13264 * 11 10 8 14 14 C 1.53036 * 109.53734 * 181.28759 * 13 11 10 15 15 C 1.53189 * 109.33865 * 298.67795 * 14 13 11 16 16 N 1.46927 * 108.77536 * 54.62197 * 15 14 13 17 17 C 1.36943 * 120.63244 * 126.41224 * 16 15 14 18 18 H 1.08003 * 119.99728 * 332.60653 * 17 16 15 19 19 C 1.38803 * 120.00050 * 152.60283 * 17 16 15 20 20 N 1.31627 * 119.99924 * 159.35284 * 19 17 16 21 21 Si 1.86797 * 120.00118 * 339.35942 * 19 17 16 22 22 H 1.48495 * 109.47249 * 92.92243 * 21 19 17 23 23 H 1.48505 * 109.47030 * 212.92214 * 21 19 17 24 24 H 1.48494 * 109.47189 * 332.91628 * 21 19 17 25 25 C 1.46923 * 118.73975 * 306.39124 * 16 15 14 26 26 S 1.70960 * 124.79796 * 269.99978 * 4 3 2 27 27 H 1.09000 * 109.46951 * 300.00104 * 1 2 3 28 28 H 1.08996 * 109.47173 * 60.00366 * 1 2 3 29 29 H 1.09001 * 109.46771 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47500 * 59.99989 * 3 2 1 31 31 H 1.09007 * 109.47242 * 299.99486 * 3 2 1 32 32 H 1.07993 * 122.90841 * 180.34608 * 6 5 4 33 33 H 0.96998 * 120.00176 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.43297 * 61.27959 * 13 11 10 35 35 H 1.09002 * 109.48195 * 301.32100 * 13 11 10 36 36 H 1.09010 * 109.49484 * 178.71274 * 14 13 11 37 37 H 1.08994 * 109.50217 * 58.65246 * 14 13 11 38 38 H 1.09002 * 109.58854 * 174.41052 * 15 14 13 39 39 H 1.09001 * 109.59109 * 294.69523 * 15 14 13 40 40 H 0.96999 * 119.99921 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.58928 * 173.39180 * 25 16 15 42 42 H 1.09003 * 109.58804 * 293.82312 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2486 1.1280 -1.0636 6 6 5.5434 1.0310 -0.8945 7 6 5.9331 0.9943 0.4045 8 6 7.3127 0.8847 0.8907 9 8 8.2332 0.8119 0.0981 10 7 7.5608 0.8646 2.2152 11 6 8.9386 0.7546 2.7009 12 1 9.6055 1.2938 2.0282 13 6 9.0347 1.3553 4.1052 14 6 10.4801 1.2699 4.6005 15 6 10.9057 -0.2000 4.6725 16 7 10.6796 -0.8225 3.3610 17 6 11.6917 -1.4852 2.7194 18 1 12.7196 -1.2094 2.9035 19 6 11.3967 -2.5113 1.8324 20 7 12.2808 -2.8730 0.9269 21 14 9.7448 -3.3786 1.9236 22 1 8.7886 -2.7211 0.9970 23 1 9.9111 -4.8022 1.5351 24 1 9.2215 -3.3022 3.3112 25 6 9.3467 -0.7211 2.7513 26 16 4.4857 1.1094 1.4028 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 6.2406 0.9816 -1.7178 33 1 6.8271 0.9230 2.8470 34 1 8.3854 0.8002 4.7822 35 1 8.7218 2.3990 4.0764 36 1 10.5522 1.7185 5.5914 37 1 11.1333 1.8044 3.9109 38 1 11.9633 -0.2621 4.9290 39 1 10.3151 -0.7147 5.4304 40 1 12.0748 -3.5903 0.3073 41 1 9.3756 -1.1270 1.7401 42 1 8.6272 -1.2789 3.3507 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009745499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:57 Heat of formation + Delta-G solvation = -33.058763 kcal Electronic energy + Delta-G solvation = -25228.676443 eV Core-core repulsion = 21528.623612 eV Total energy + Delta-G solvation = -3700.052831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51820 -40.65878 -39.18305 -38.73244 -36.03905 -34.55976 -32.90064 -32.57161 -31.02591 -29.33129 -27.24133 -27.14637 -25.37883 -24.51249 -23.84631 -22.46704 -21.50806 -20.60418 -19.72402 -18.87850 -18.25780 -17.64723 -17.49356 -17.21696 -16.59026 -16.45506 -16.24290 -15.94950 -15.70987 -15.51192 -15.23233 -15.10705 -14.81839 -14.50244 -14.13391 -13.88552 -13.76302 -13.45838 -13.29572 -12.83091 -12.68999 -12.57884 -12.50155 -12.39596 -11.84177 -11.76337 -11.70853 -11.42530 -11.37933 -10.95641 -10.87669 -10.77900 -10.71853 -10.32850 -10.16909 -8.96691 -8.23610 -5.54023 -1.05035 -0.06188 0.32869 1.16022 1.23346 1.27272 1.37574 1.80272 1.95889 2.35149 2.58826 2.99819 3.21891 3.34094 3.59690 3.74105 3.79517 3.99203 4.04920 4.12611 4.20449 4.31347 4.33924 4.36582 4.52171 4.59499 4.64345 4.77294 4.82991 4.84932 4.89893 4.97515 5.05282 5.14442 5.20079 5.26574 5.53466 5.82266 6.03491 6.07432 6.24069 6.40539 6.85704 6.96013 7.57246 7.96449 8.96257 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.003358 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.647680 B = 8335.996173 C = 9020.658631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.134 3.866 4 C 0.043 3.957 5 N -0.483 5.483 6 C 0.111 3.889 7 C -0.312 4.312 8 C 0.586 3.414 9 O -0.566 6.566 10 N -0.703 5.703 11 C 0.135 3.865 12 H 0.061 0.939 13 C -0.107 4.107 14 C -0.124 4.124 15 C 0.135 3.865 16 N -0.617 5.617 17 C -0.246 4.246 18 H 0.059 0.941 19 C -0.034 4.034 20 N -0.954 5.954 21 Si 0.941 3.059 22 H -0.299 1.299 23 H -0.307 1.307 24 H -0.248 1.248 25 C 0.117 3.883 26 S 0.273 5.727 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.182 0.818 33 H 0.413 0.587 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.260 0.740 41 H 0.034 0.966 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.618 13.828 7.455 31.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.055 3.945 4 C -0.231 4.231 5 N -0.199 5.199 6 C -0.048 4.048 7 C -0.437 4.437 8 C 0.372 3.628 9 O -0.446 6.446 10 N -0.355 5.355 11 C 0.029 3.971 12 H 0.080 0.920 13 C -0.145 4.145 14 C -0.163 4.163 15 C 0.011 3.989 16 N -0.342 5.342 17 C -0.375 4.375 18 H 0.076 0.924 19 C -0.229 4.229 20 N -0.600 5.600 21 Si 0.771 3.229 22 H -0.227 1.227 23 H -0.235 1.235 24 H -0.172 1.172 25 C -0.009 4.009 26 S 0.530 5.470 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.199 0.801 33 H 0.250 0.750 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -27.334 13.547 7.458 31.405 hybrid contribution 0.232 -0.894 -1.534 1.790 sum -27.102 12.653 5.924 30.491 Atomic orbital electron populations 1.23024 0.77834 1.04255 1.01874 1.87930 1.22639 1.26868 1.95857 1.21122 0.81979 0.86333 1.05094 1.27658 1.02280 1.01511 0.91683 1.66224 1.04496 1.16719 1.32478 1.22228 0.91096 0.95556 0.95892 1.25780 0.98562 1.20140 0.99231 1.17157 0.86506 0.76065 0.83079 1.90899 1.46137 1.51232 1.56333 1.45817 1.10065 1.73878 1.05734 1.21524 0.81203 0.96640 0.97720 0.92027 1.21703 0.98473 1.01995 0.92361 1.21920 0.95328 0.96637 1.02419 1.21291 0.99970 0.92715 0.84889 1.44441 1.07700 1.63166 1.18873 1.18891 0.88259 1.10339 1.20045 0.92377 1.25884 1.00218 0.99068 0.97752 1.69961 1.38156 1.32265 1.19649 0.85986 0.81335 0.76824 0.78766 1.22709 1.23538 1.17224 1.21657 0.87190 0.95727 0.96338 1.83277 0.93033 1.62118 1.08555 0.91533 0.92541 0.88726 0.86945 0.88628 0.80073 0.74979 0.89311 0.88836 0.87541 0.93293 0.92340 0.93596 0.93114 0.94799 0.94364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.45 16 2 O -0.41 -6.73 10.69 -148.98 -1.59 -8.32 16 3 C 0.13 1.68 6.51 71.24 0.46 2.14 16 4 C 0.04 0.84 7.02 88.47 0.62 1.47 16 5 N -0.48 -12.56 10.51 -190.29 -2.00 -14.56 16 6 C 0.11 3.21 11.09 84.23 0.93 4.14 16 7 C -0.31 -8.79 6.48 23.88 0.15 -8.64 16 8 C 0.59 20.78 7.75 86.45 0.67 21.45 16 9 O -0.57 -26.36 16.53 -4.32 -0.07 -26.43 16 10 N -0.70 -20.92 5.08 -446.12 -2.27 -23.18 16 11 C 0.14 4.77 2.60 45.07 0.12 4.88 16 12 H 0.06 2.62 7.58 -2.39 -0.02 2.60 16 13 C -0.11 -2.62 5.36 30.62 0.16 -2.45 16 14 C -0.12 -3.35 6.08 30.67 0.19 -3.16 16 15 C 0.14 4.88 6.52 86.36 0.56 5.44 16 16 N -0.62 -29.71 2.77 -699.09 -1.94 -31.64 16 17 C -0.25 -14.57 10.03 84.03 0.84 -13.73 16 18 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 19 C -0.03 -2.15 5.23 84.86 0.44 -1.70 16 20 N -0.95 -63.96 13.97 21.65 0.30 -63.65 16 21 Si 0.94 50.67 24.34 68.60 1.67 52.34 16 22 H -0.30 -16.51 6.62 99.48 0.66 -15.85 16 23 H -0.31 -16.51 7.11 99.48 0.71 -15.81 16 24 H -0.25 -12.23 6.64 99.48 0.66 -11.57 16 25 C 0.12 5.28 3.78 86.36 0.33 5.60 16 26 S 0.27 4.80 22.31 -56.49 -1.26 3.54 16 27 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.18 5.36 8.06 -2.91 -0.02 5.33 16 33 H 0.41 8.57 7.79 -92.71 -0.72 7.85 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 2.16 7.93 -2.39 -0.02 2.15 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.26 16.67 8.31 -92.71 -0.77 15.90 16 41 H 0.03 1.85 4.50 -2.39 -0.01 1.84 16 42 H 0.04 1.61 7.08 -2.39 -0.02 1.60 16 Total: -1.00 -85.93 356.73 -0.19 -86.12 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.23 Total: 8.90 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 6.74 Total: 16.89 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -5.90 Total: -133.04 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.66 Total: -34.76 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 1.67 Total: 52.34 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -1.26 Total: 3.54 kcal Total: -85.93 -0.19 -86.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009745499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.063 kcal (2) G-P(sol) polarization free energy of solvation -85.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds