Wall clock time and date at job start Tue Mar 31 2020 14:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48493 * 109.47005 * 269.99975 * 3 2 1 5 5 H 1.48501 * 109.47040 * 29.99913 * 3 2 1 6 6 H 1.48500 * 109.46752 * 149.99767 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00288 * 163.08058 * 7 2 1 9 9 N 1.36939 * 119.99958 * 343.08098 * 7 2 1 10 10 C 1.46924 * 120.62993 * 331.83412 * 9 7 2 11 11 C 1.53192 * 108.77591 * 233.58522 * 10 9 7 12 12 C 1.53036 * 109.31293 * 305.36430 * 11 10 9 13 13 C 1.53038 * 109.54003 * 61.36202 * 12 11 10 14 14 H 1.09004 * 109.49876 * 58.58814 * 13 12 11 15 15 C 1.53007 * 109.50110 * 178.68265 * 13 12 11 16 16 N 1.46499 * 109.47178 * 185.00202 * 15 13 12 17 17 C 1.34774 * 120.00141 * 180.02562 * 16 15 13 18 18 O 1.21557 * 119.99595 * 0.02562 * 17 16 15 19 19 C 1.47879 * 120.00294 * 180.02562 * 17 16 15 20 20 N 1.32841 * 119.71824 * 359.71994 * 19 17 16 21 21 C 1.31374 * 121.68762 * 179.74813 * 20 19 17 22 22 C 1.39003 * 120.92970 * 0.53860 * 21 20 19 23 23 F 1.35096 * 120.32690 * 179.76369 * 22 21 20 24 24 C 1.38723 * 119.34305 * 359.73128 * 22 21 20 25 25 C 1.38828 * 118.44619 * 0.02562 * 24 22 21 26 26 F 1.35103 * 120.48511 * 180.02562 * 25 24 22 27 27 C 1.46920 * 120.63092 * 151.55029 * 9 7 2 28 28 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58627 * 353.37206 * 10 9 7 30 30 H 1.08997 * 109.58757 * 113.65672 * 10 9 7 31 31 H 1.08996 * 109.49789 * 65.31574 * 11 10 9 32 32 H 1.09005 * 109.49945 * 185.38058 * 11 10 9 33 33 H 1.08998 * 109.46142 * 181.38594 * 12 11 10 34 34 H 1.09004 * 109.46070 * 301.35904 * 12 11 10 35 35 H 1.08996 * 109.46808 * 305.00311 * 15 13 12 36 36 H 1.09003 * 109.46608 * 65.00470 * 15 13 12 37 37 H 0.97003 * 120.00046 * 0.02562 * 16 15 13 38 38 H 1.07998 * 119.53588 * 180.27096 * 21 20 19 39 39 H 1.08000 * 120.77362 * 179.97438 * 24 22 21 40 40 H 1.08999 * 109.58855 * 246.20212 * 27 9 7 41 41 H 1.08998 * 109.58990 * 6.63087 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2717 9 7 1.3701 -2.3622 0.3462 10 6 0.2262 -2.3399 1.2679 11 6 0.4976 -3.3191 2.4143 12 6 0.8120 -4.7007 1.8361 13 6 2.0672 -4.6173 0.9647 14 1 2.9023 -4.2537 1.5635 15 6 2.3996 -6.0055 0.4136 16 7 3.6656 -5.9489 -0.3213 17 6 4.1600 -7.0618 -0.8987 18 8 3.5552 -8.1125 -0.8100 19 6 5.4383 -7.0048 -1.6401 20 7 6.0918 -5.8525 -1.7383 21 6 7.2324 -5.7588 -2.3833 22 6 7.7969 -6.8685 -3.0014 23 9 8.9681 -6.7573 -3.6656 24 6 7.1461 -8.0915 -2.9290 25 6 5.9449 -8.1613 -2.2363 26 9 5.2766 -9.3314 -2.1395 27 6 1.8101 -3.6521 -0.2025 28 1 -0.4850 0.8400 -0.0004 29 1 0.0994 -1.3342 1.6687 30 1 -0.6774 -2.6379 0.7362 31 1 1.3473 -2.9677 2.9995 32 1 -0.3828 -3.3836 3.0539 33 1 0.9813 -5.4052 2.6504 34 1 -0.0282 -5.0407 1.2306 35 1 2.4897 -6.7119 1.2388 36 1 1.6042 -6.3300 -0.2573 37 1 4.1481 -5.1103 -0.3924 38 1 7.7365 -4.8052 -2.4378 39 1 7.5636 -8.9685 -3.4010 40 1 1.0335 -4.0574 -0.8511 41 1 2.7288 -3.5126 -0.7722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023444130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:24 Heat of formation + Delta-G solvation = -71.565856 kcal Electronic energy + Delta-G solvation = -27113.244961 eV Core-core repulsion = 22857.681951 eV Total energy + Delta-G solvation = -4255.563011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.67022 -49.39947 -40.79870 -39.22177 -37.74455 -34.91133 -33.25718 -32.78784 -31.54592 -30.43965 -30.18024 -26.12025 -25.29003 -24.84656 -23.98117 -22.13873 -21.25636 -20.75994 -19.24212 -18.73202 -18.60492 -18.09197 -16.80439 -16.67251 -16.39221 -15.91530 -15.88860 -15.38407 -15.26654 -14.87354 -14.80078 -14.29756 -13.95583 -13.80122 -13.66766 -13.44155 -13.35037 -12.94963 -12.78594 -12.34395 -12.23950 -12.17565 -11.29411 -11.02295 -10.73989 -10.70845 -10.50544 -10.43751 -10.25135 -10.19610 -10.10494 -9.91010 -9.58345 -9.49575 -9.41773 -8.96745 -8.46601 -6.66917 -5.79322 -3.22364 -0.15381 0.29840 2.29417 2.82590 3.17092 3.23530 3.36491 3.43781 3.45742 3.46702 3.63542 3.99339 4.18107 4.47922 4.52370 4.87439 5.03550 5.11267 5.17810 5.28875 5.42774 5.46723 5.61552 5.81372 5.85669 5.92595 5.98637 6.22883 6.30240 6.36237 6.43613 6.59954 6.69414 6.77278 6.85592 6.92125 6.96429 7.39791 7.49478 7.67507 7.78835 8.07691 8.44536 9.20712 9.84140 10.41115 11.28951 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.003118 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.568270 B = 8979.122818 C =10782.015381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.075 0.925 15 C 0.125 3.875 16 N -0.697 5.697 17 C 0.566 3.434 18 O -0.526 6.526 19 C 0.040 3.960 20 N -0.397 5.397 21 C 0.069 3.931 22 C 0.103 3.897 23 F -0.115 7.115 24 C -0.159 4.159 25 C 0.142 3.858 26 F -0.095 7.095 27 C 0.153 3.847 28 H 0.254 0.746 29 H 0.086 0.914 30 H 0.017 0.983 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.414 0.586 38 H 0.186 0.814 39 H 0.168 0.832 40 H 0.019 0.981 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.803 -14.831 -2.980 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.180 4.180 12 C -0.137 4.137 13 C -0.139 4.139 14 H 0.093 0.907 15 C 0.002 3.998 16 N -0.348 5.348 17 C 0.349 3.651 18 O -0.402 6.402 19 C -0.100 4.100 20 N -0.107 5.107 21 C -0.093 4.093 22 C 0.081 3.919 23 F -0.094 7.094 24 C -0.186 4.186 25 C 0.119 3.881 26 F -0.073 7.073 27 C 0.026 3.974 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.251 0.749 38 H 0.203 0.797 39 H 0.186 0.814 40 H 0.037 0.963 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.835 -14.720 -2.509 19.690 hybrid contribution 1.198 0.354 -0.678 1.421 sum 14.033 -14.366 -3.187 20.334 Atomic orbital electron populations 1.70037 1.05293 1.25493 1.53808 1.25044 0.95253 0.98403 1.00854 0.86326 0.79195 0.83721 0.77704 1.21411 1.21585 1.20455 1.19162 0.92517 0.84801 1.41845 0.91705 1.44044 1.35971 1.01389 1.49924 1.20795 0.88549 0.98301 0.88063 1.22164 1.00113 0.95944 0.99827 1.21338 0.96673 0.97787 0.97941 1.22049 0.98953 0.93382 0.99501 0.90676 1.21591 0.84266 0.98459 0.95530 1.45904 1.24451 1.11716 1.52722 1.17484 0.83318 0.84671 0.79621 1.90866 1.59302 1.29574 1.60423 1.21610 0.98081 0.88757 1.01516 1.67756 1.06213 1.24036 1.12718 1.23142 0.92303 0.98864 0.95026 1.18777 0.83729 0.94561 0.94866 1.91592 1.43758 1.96508 1.77502 1.21684 0.95090 0.99521 1.02272 1.18309 0.90608 0.82751 0.96435 1.91671 1.78669 1.43637 1.93325 1.21000 0.97584 0.86840 0.91976 0.93643 0.89591 0.96441 0.92726 0.93176 0.93402 0.92434 0.91541 0.91136 0.74876 0.79735 0.81444 0.96314 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 11.20 55.49 0.62 -25.28 16 2 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 8 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.40 2.99 -172.06 -0.51 -14.91 16 10 C 0.17 3.95 5.30 -3.71 -0.02 3.93 16 11 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 12 C -0.10 -1.60 5.16 -26.69 -0.14 -1.74 16 13 C -0.12 -1.92 2.39 -90.27 -0.22 -2.13 16 14 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 15 C 0.12 1.80 5.07 -4.04 -0.02 1.78 16 16 N -0.70 -9.71 5.32 -61.24 -0.33 -10.04 16 17 C 0.57 8.23 7.80 -12.32 -0.10 8.13 16 18 O -0.53 -9.04 15.31 5.32 0.08 -8.96 16 19 C 0.04 0.48 6.75 -82.97 -0.56 -0.08 16 20 N -0.40 -4.29 9.53 -9.70 -0.09 -4.38 16 21 C 0.07 0.55 11.17 -17.46 -0.20 0.36 16 22 C 0.10 0.76 7.35 -39.12 -0.29 0.47 16 23 F -0.12 -0.83 17.28 2.25 0.04 -0.79 16 24 C -0.16 -1.21 10.14 -39.18 -0.40 -1.61 16 25 C 0.14 1.52 7.31 -38.84 -0.28 1.23 16 26 F -0.10 -1.18 15.54 2.25 0.04 -1.14 16 27 C 0.15 3.06 5.63 -3.49 -0.02 3.04 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.41 5.54 7.04 -40.82 -0.29 5.25 16 38 H 0.19 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 1.01 7.16 -51.93 -0.37 0.64 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -31.03 348.59 -7.73 -38.76 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.17 Total: 1.55 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -2.63 Total: 3.67 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.31 Total: -54.60 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.08 Total: -8.96 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.07 Total: -1.93 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.03 -7.73 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023444130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.807 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds