Wall clock time and date at job start Tue Mar 31 2020 14:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48493 * 109.47005 * 269.99975 * 3 2 1 5 5 H 1.48501 * 109.47040 * 29.99913 * 3 2 1 6 6 H 1.48500 * 109.46752 * 149.99767 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00288 * 163.08058 * 7 2 1 9 9 N 1.36939 * 119.99958 * 343.08098 * 7 2 1 10 10 C 1.46924 * 120.62993 * 331.83412 * 9 7 2 11 11 C 1.53192 * 108.77591 * 233.58522 * 10 9 7 12 12 C 1.53036 * 109.31293 * 305.36430 * 11 10 9 13 13 C 1.53038 * 109.54003 * 61.36202 * 12 11 10 14 14 H 1.09004 * 109.49876 * 58.58814 * 13 12 11 15 15 C 1.53007 * 109.50110 * 178.68265 * 13 12 11 16 16 N 1.46499 * 109.47178 * 185.00202 * 15 13 12 17 17 C 1.34774 * 120.00141 * 180.02562 * 16 15 13 18 18 O 1.21557 * 119.99595 * 0.02562 * 17 16 15 19 19 C 1.47879 * 120.00294 * 180.02562 * 17 16 15 20 20 N 1.32841 * 119.71824 * 359.71994 * 19 17 16 21 21 C 1.31374 * 121.68762 * 179.74813 * 20 19 17 22 22 C 1.39003 * 120.92970 * 0.53860 * 21 20 19 23 23 F 1.35096 * 120.32690 * 179.76369 * 22 21 20 24 24 C 1.38723 * 119.34305 * 359.73128 * 22 21 20 25 25 C 1.38828 * 118.44619 * 0.02562 * 24 22 21 26 26 F 1.35103 * 120.48511 * 180.02562 * 25 24 22 27 27 C 1.46920 * 120.63092 * 151.55029 * 9 7 2 28 28 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58627 * 353.37206 * 10 9 7 30 30 H 1.08997 * 109.58757 * 113.65672 * 10 9 7 31 31 H 1.08996 * 109.49789 * 65.31574 * 11 10 9 32 32 H 1.09005 * 109.49945 * 185.38058 * 11 10 9 33 33 H 1.08998 * 109.46142 * 181.38594 * 12 11 10 34 34 H 1.09004 * 109.46070 * 301.35904 * 12 11 10 35 35 H 1.08996 * 109.46808 * 305.00311 * 15 13 12 36 36 H 1.09003 * 109.46608 * 65.00470 * 15 13 12 37 37 H 0.97003 * 120.00046 * 0.02562 * 16 15 13 38 38 H 1.07998 * 119.53588 * 180.27096 * 21 20 19 39 39 H 1.08000 * 120.77362 * 179.97438 * 24 22 21 40 40 H 1.08999 * 109.58855 * 246.20212 * 27 9 7 41 41 H 1.08998 * 109.58990 * 6.63087 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2717 9 7 1.3701 -2.3622 0.3462 10 6 0.2262 -2.3399 1.2679 11 6 0.4976 -3.3191 2.4143 12 6 0.8120 -4.7007 1.8361 13 6 2.0672 -4.6173 0.9647 14 1 2.9023 -4.2537 1.5635 15 6 2.3996 -6.0055 0.4136 16 7 3.6656 -5.9489 -0.3213 17 6 4.1600 -7.0618 -0.8987 18 8 3.5552 -8.1125 -0.8100 19 6 5.4383 -7.0048 -1.6401 20 7 6.0918 -5.8525 -1.7383 21 6 7.2324 -5.7588 -2.3833 22 6 7.7969 -6.8685 -3.0014 23 9 8.9681 -6.7573 -3.6656 24 6 7.1461 -8.0915 -2.9290 25 6 5.9449 -8.1613 -2.2363 26 9 5.2766 -9.3314 -2.1395 27 6 1.8101 -3.6521 -0.2025 28 1 -0.4850 0.8400 -0.0004 29 1 0.0994 -1.3342 1.6687 30 1 -0.6774 -2.6379 0.7362 31 1 1.3473 -2.9677 2.9995 32 1 -0.3828 -3.3836 3.0539 33 1 0.9813 -5.4052 2.6504 34 1 -0.0282 -5.0407 1.2306 35 1 2.4897 -6.7119 1.2388 36 1 1.6042 -6.3300 -0.2573 37 1 4.1481 -5.1103 -0.3924 38 1 7.7365 -4.8052 -2.4378 39 1 7.5636 -8.9685 -3.4010 40 1 1.0335 -4.0574 -0.8511 41 1 2.7288 -3.5126 -0.7722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023444130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:24 Heat of formation + Delta-G solvation = -91.175902 kcal Electronic energy + Delta-G solvation = -27114.095317 eV Core-core repulsion = 22857.681951 eV Total energy + Delta-G solvation = -4256.413366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.28303 -50.24041 -41.66073 -40.28759 -39.25197 -36.32999 -34.74324 -33.70403 -32.49529 -32.26758 -31.53727 -27.38975 -27.11753 -25.72976 -24.82643 -23.80178 -22.66631 -21.93229 -20.74366 -19.53491 -19.39567 -19.04433 -18.54499 -17.55911 -17.14854 -16.96610 -16.83179 -16.66508 -16.38874 -16.22754 -15.75274 -15.58476 -15.42589 -15.03425 -14.87187 -14.50846 -14.45005 -14.28421 -13.99613 -13.74477 -13.69545 -13.55011 -12.99292 -12.86208 -12.48614 -12.25919 -11.96498 -11.81503 -11.68906 -11.54090 -11.31493 -11.11213 -11.08591 -10.97041 -10.51268 -10.34405 -10.03500 -8.65139 -7.84758 -5.30826 -0.92408 -0.36577 1.39406 1.48444 1.50222 1.59758 1.86848 2.35248 2.43946 2.53262 2.73021 2.85501 3.30279 3.37070 3.42186 3.60906 3.80982 3.99640 4.01264 4.07565 4.18381 4.33283 4.42658 4.57096 4.58684 4.62148 4.76684 4.87998 4.90905 5.02012 5.12704 5.20762 5.21412 5.32907 5.36994 5.45469 5.59201 5.68984 5.80683 6.13984 6.41052 6.44783 6.98356 7.17330 7.88557 8.40675 9.21410 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.003118 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.568270 B = 8979.122818 C =10782.015381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.262 4.262 8 H 0.070 0.930 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.096 4.096 13 C -0.100 4.100 14 H 0.077 0.923 15 C 0.134 3.866 16 N -0.695 5.695 17 C 0.564 3.436 18 O -0.559 6.559 19 C 0.018 3.982 20 N -0.415 5.415 21 C 0.076 3.924 22 C 0.118 3.882 23 F -0.108 7.108 24 C -0.142 4.142 25 C 0.130 3.870 26 F -0.110 7.110 27 C 0.152 3.848 28 H 0.249 0.751 29 H 0.051 0.949 30 H -0.008 1.008 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.417 0.583 38 H 0.214 0.786 39 H 0.197 0.803 40 H 0.006 0.994 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.337 -15.604 -2.962 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.392 4.392 8 H 0.088 0.912 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.134 4.134 13 C -0.121 4.121 14 H 0.096 0.904 15 C 0.011 3.989 16 N -0.346 5.346 17 C 0.349 3.651 18 O -0.438 6.438 19 C -0.120 4.120 20 N -0.125 5.125 21 C -0.087 4.087 22 C 0.096 3.904 23 F -0.086 7.086 24 C -0.169 4.169 25 C 0.106 3.894 26 F -0.088 7.088 27 C 0.026 3.974 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.010 0.990 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.255 0.745 38 H 0.231 0.769 39 H 0.214 0.786 40 H 0.024 0.976 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.389 -15.513 -2.487 21.992 hybrid contribution 0.500 0.595 -0.779 1.100 sum 15.888 -14.919 -3.266 22.038 Atomic orbital electron populations 1.70200 1.06789 1.25765 1.55541 1.25808 0.95975 1.01551 1.01321 0.85305 0.78202 0.79579 0.77539 1.21211 1.22140 1.19211 1.19541 0.92934 0.85931 1.40799 0.91234 1.44316 1.35981 1.02271 1.50638 1.20639 0.87634 0.97808 0.89255 1.21992 1.00988 0.95902 0.97977 1.21336 0.96391 0.96849 0.98872 1.21804 0.99236 0.93227 0.97811 0.90444 1.21431 0.84436 0.97249 0.95814 1.45871 1.24220 1.11879 1.52624 1.17840 0.83988 0.84053 0.79232 1.90835 1.60582 1.30605 1.61767 1.21261 0.97775 0.89983 1.02974 1.67727 1.07345 1.23550 1.13834 1.23627 0.91258 1.00232 0.93586 1.18706 0.83506 0.94233 0.93954 1.91625 1.43323 1.96443 1.77199 1.21900 0.93515 1.00692 1.00753 1.18448 0.91621 0.81914 0.97380 1.91631 1.79242 1.44344 1.93602 1.21109 0.97004 0.85883 0.93387 0.94226 0.93044 0.98952 0.92793 0.91180 0.89953 0.92529 0.90172 0.91854 0.74546 0.76932 0.78561 0.97587 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.47 11.20 21.65 0.24 -55.23 16 2 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 3 Si 0.97 44.24 29.59 68.60 2.03 46.27 16 4 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.26 -14.16 9.58 84.03 0.81 -13.35 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 9 N -0.61 -30.07 2.99 -698.28 -2.09 -32.16 16 10 C 0.17 8.26 5.30 86.36 0.46 8.72 16 11 C -0.13 -4.67 6.08 30.67 0.19 -4.48 16 12 C -0.10 -2.92 5.16 30.62 0.16 -2.76 16 13 C -0.10 -3.12 2.39 -10.57 -0.03 -3.15 16 14 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 15 C 0.13 3.71 5.07 86.38 0.44 4.15 16 16 N -0.70 -18.92 5.32 -465.93 -2.48 -21.40 16 17 C 0.56 16.30 7.80 86.80 0.68 16.98 16 18 O -0.56 -19.35 15.31 -3.89 -0.06 -19.41 16 19 C 0.02 0.42 6.75 41.88 0.28 0.70 16 20 N -0.41 -8.32 9.53 -184.61 -1.76 -10.08 16 21 C 0.08 1.01 11.17 84.94 0.95 1.96 16 22 C 0.12 1.39 7.35 22.57 0.17 1.55 16 23 F -0.11 -1.17 17.28 44.97 0.78 -0.39 16 24 C -0.14 -1.79 10.14 22.53 0.23 -1.56 16 25 C 0.13 2.62 7.31 22.75 0.17 2.79 16 26 F -0.11 -2.70 15.54 44.97 0.70 -2.00 16 27 C 0.15 6.08 5.63 86.51 0.49 6.57 16 28 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.05 2.80 6.06 -2.39 -0.01 2.79 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.42 10.84 7.04 -92.71 -0.65 10.19 16 38 H 0.21 1.49 8.06 -2.91 -0.02 1.46 16 39 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.05 2.12 7.16 -2.39 -0.02 2.10 16 Total: -1.00 -69.05 348.59 3.18 -65.87 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.42 Total: 12.85 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 5.39 Total: 15.68 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -6.08 Total: -118.86 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.06 Total: -19.41 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 1.48 Total: -2.39 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -69.05 3.18 -65.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023444130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.304 kcal (2) G-P(sol) polarization free energy of solvation -69.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds