Wall clock time and date at job start Tue Mar 31 2020 14:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00513 * 2 1 4 4 H 1.48502 * 109.47259 * 95.64226 * 3 2 1 5 5 H 1.48493 * 109.47320 * 215.64656 * 3 2 1 6 6 H 1.48503 * 109.46977 * 335.64526 * 3 2 1 7 7 C 1.38820 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00181 * 336.17233 * 7 2 1 9 9 N 1.36936 * 119.99749 * 156.17682 * 7 2 1 10 10 C 1.46929 * 120.62809 * 304.38369 * 9 7 2 11 11 C 1.53189 * 108.77727 * 233.58662 * 10 9 7 12 12 C 1.53039 * 109.31392 * 305.36886 * 11 10 9 13 13 C 1.53039 * 109.53743 * 61.36370 * 12 11 10 14 14 C 1.46920 * 120.63480 * 124.10866 * 9 7 2 15 15 H 1.08994 * 109.58674 * 246.20099 * 14 9 7 16 16 C 1.53002 * 109.58419 * 6.62358 * 14 9 7 17 17 N 1.46501 * 109.47332 * 299.63379 * 16 14 9 18 18 C 1.34776 * 120.00102 * 179.97438 * 17 16 14 19 19 O 1.21543 * 120.00080 * 359.97438 * 18 17 16 20 20 C 1.47853 * 119.99825 * 179.97438 * 18 17 16 21 21 C 1.40123 * 120.95678 * 89.71728 * 20 18 17 22 22 F 1.35103 * 120.52535 * 0.02562 * 21 20 18 23 23 C 1.38439 * 118.95617 * 179.77512 * 21 20 18 24 24 N 1.31765 * 120.92947 * 0.51259 * 23 21 20 25 25 C 1.31777 * 122.14174 * 359.74090 * 24 23 21 26 26 C 1.38432 * 120.92667 * 359.97438 * 25 24 23 27 27 F 1.35103 * 120.51795 * 179.97438 * 26 25 24 28 28 H 0.97007 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.59007 * 353.37903 * 10 9 7 30 30 H 1.09003 * 109.58721 * 113.65742 * 10 9 7 31 31 H 1.09001 * 109.49412 * 65.32295 * 11 10 9 32 32 H 1.09000 * 109.49861 * 185.38175 * 11 10 9 33 33 H 1.09001 * 109.45845 * 181.38342 * 12 11 10 34 34 H 1.08994 * 109.46017 * 301.35725 * 12 11 10 35 35 H 1.09005 * 109.50109 * 58.58689 * 13 12 11 36 36 H 1.09004 * 109.49744 * 178.65064 * 13 12 11 37 37 H 1.09007 * 109.47415 * 59.63288 * 16 14 9 38 38 H 1.08999 * 109.47188 * 179.63189 * 16 14 9 39 39 H 0.97003 * 119.99562 * 0.02562 * 17 16 14 40 40 H 1.08000 * 119.53117 * 180.24949 * 23 21 20 41 41 H 1.07996 * 119.53248 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6170 1.9775 1.3933 5 1 3.4830 1.4774 -0.8159 6 1 1.3932 2.6841 -0.5774 7 6 2.0102 -1.2023 0.0005 8 1 1.5392 -2.0975 0.3788 9 7 3.2920 -1.2530 -0.4785 10 6 3.6014 -0.7932 -1.8392 11 6 4.3394 -1.9115 -2.5818 12 6 5.5640 -2.3368 -1.7684 13 6 5.1133 -2.8754 -0.4086 14 6 4.3851 -1.7627 0.3605 15 1 5.0808 -0.9543 0.5851 16 6 3.8122 -2.3267 1.6623 17 7 3.1070 -1.2657 2.3857 18 6 2.5173 -1.5331 3.5677 19 8 2.5701 -2.6545 4.0334 20 6 1.8060 -0.4621 4.2979 21 6 0.4432 -0.2217 4.0775 22 9 -0.2503 -0.9676 3.1898 23 6 -0.1826 0.7887 4.7874 24 7 0.4872 1.5244 5.6513 25 6 1.7702 1.3365 5.8859 26 6 2.4764 0.3453 5.2263 27 9 3.7918 0.1602 5.4729 28 1 -0.4850 0.8401 -0.0004 29 1 2.6761 -0.5550 -2.3637 30 1 4.2325 0.0942 -1.7904 31 1 3.6731 -2.7647 -2.7094 32 1 4.6589 -1.5500 -3.5592 33 1 6.1046 -3.1155 -2.3063 34 1 6.2176 -1.4774 -1.6198 35 1 4.4398 -3.7196 -0.5567 36 1 5.9842 -3.2004 0.1608 37 1 3.1170 -3.1345 1.4335 38 1 4.6240 -2.7102 2.2805 39 1 3.0638 -0.3710 2.0134 40 1 -1.2336 0.9793 4.6277 41 1 2.2778 1.9647 6.6029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024460820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:54 Heat of formation + Delta-G solvation = -66.577514 kcal Electronic energy + Delta-G solvation = -29203.262866 eV Core-core repulsion = 24947.916166 eV Total energy + Delta-G solvation = -4255.346700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.16482 -48.75127 -40.15319 -39.04964 -37.85953 -34.34966 -33.04562 -32.62108 -30.94315 -30.77214 -30.63990 -26.55988 -25.28447 -24.04703 -23.55221 -22.38185 -21.02414 -20.48081 -19.49292 -18.16917 -18.09495 -17.76232 -16.56768 -16.34366 -15.82210 -15.70375 -15.46429 -15.32767 -15.17289 -14.88627 -14.05963 -13.93440 -13.82662 -13.62637 -13.59492 -13.29810 -13.17055 -13.15825 -12.64849 -12.35629 -12.20864 -11.87443 -11.56869 -11.36436 -10.92284 -10.80393 -10.55781 -10.34496 -10.22935 -9.99012 -9.85875 -9.81062 -9.61534 -9.45420 -8.96772 -8.68427 -8.38141 -6.57417 -6.17922 -3.77047 0.59925 0.68822 2.76817 3.11703 3.24914 3.30118 3.33471 3.48823 3.63970 4.00554 4.22722 4.34391 4.64579 4.70573 4.83596 4.97274 5.10153 5.29614 5.39207 5.43126 5.46409 5.54249 5.68095 5.76480 5.86155 5.94956 6.11404 6.17669 6.21844 6.39141 6.41765 6.43471 6.47996 6.57882 6.75421 6.82907 6.92980 7.02318 7.49823 7.92701 7.97156 8.43020 8.55271 8.86698 9.50223 10.07662 10.93756 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.014757 B = 0.005559 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.912688 B = 5036.106296 C = 5818.815137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.060 3.940 3 Si 0.832 3.168 4 H -0.286 1.286 5 H -0.253 1.253 6 H -0.291 1.291 7 C -0.276 4.276 8 H 0.071 0.929 9 N -0.600 5.600 10 C 0.141 3.859 11 C -0.136 4.136 12 C -0.108 4.108 13 C -0.126 4.126 14 C 0.152 3.848 15 H 0.034 0.966 16 C 0.138 3.862 17 N -0.670 5.670 18 C 0.561 3.439 19 O -0.538 6.538 20 C -0.151 4.151 21 C 0.133 3.867 22 F -0.087 7.087 23 C 0.059 3.941 24 N -0.422 5.422 25 C 0.054 3.946 26 C 0.107 3.893 27 F -0.115 7.115 28 H 0.264 0.736 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.409 0.591 40 H 0.182 0.818 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.965 1.937 5.498 8.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.145 4.145 3 Si 0.659 3.341 4 H -0.213 1.213 5 H -0.177 1.177 6 H -0.218 1.218 7 C -0.405 4.405 8 H 0.089 0.911 9 N -0.326 5.326 10 C 0.016 3.984 11 C -0.176 4.176 12 C -0.146 4.146 13 C -0.165 4.165 14 C 0.046 3.954 15 H 0.052 0.948 16 C 0.014 3.986 17 N -0.319 5.319 18 C 0.343 3.657 19 O -0.417 6.417 20 C -0.164 4.164 21 C 0.110 3.890 22 F -0.065 7.065 23 C -0.100 4.100 24 N -0.129 5.129 25 C -0.104 4.104 26 C 0.084 3.916 27 F -0.093 7.093 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.246 0.754 40 H 0.199 0.801 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.414 1.846 6.207 8.441 hybrid contribution 0.868 0.695 -0.878 1.417 sum 6.282 2.541 5.330 8.622 Atomic orbital electron populations 1.69916 1.06021 1.26854 1.48002 1.25911 0.94851 0.97351 0.96365 0.87549 0.81984 0.85964 0.78609 1.21333 1.17744 1.21754 1.18527 0.87307 0.93949 1.40701 0.91116 1.44304 1.04110 1.75160 1.08990 1.21344 0.97956 0.93363 0.85709 1.22024 0.97221 1.00728 0.97577 1.21360 0.97473 0.99727 0.96010 1.21972 0.99348 0.98973 0.96229 1.21045 0.90700 0.94089 0.89565 0.94845 1.21330 0.95346 0.90453 0.91439 1.45904 1.52269 1.15141 1.18546 1.17499 0.79565 0.86793 0.81818 1.90771 1.60886 1.21558 1.68437 1.20765 0.94675 1.00064 1.00900 1.18705 0.88494 0.92015 0.89806 1.91758 1.77351 1.73492 1.63899 1.23011 1.01821 0.91735 0.93408 1.67582 1.07505 1.23939 1.13899 1.22868 0.90504 0.96687 1.00382 1.18622 0.79402 0.96545 0.96997 1.91568 1.30839 1.94312 1.92608 0.92538 0.91662 0.95844 0.92038 0.93237 0.93181 0.92855 0.91624 0.92733 0.90697 0.92121 0.75362 0.80119 0.80446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.78 13.97 55.49 0.78 -23.01 16 2 C 0.06 1.53 5.04 -17.43 -0.09 1.44 16 3 Si 0.83 19.33 26.32 -169.99 -4.47 14.85 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.25 -5.66 5.12 56.52 0.29 -5.37 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.28 -6.83 6.40 -15.06 -0.10 -6.92 16 8 H 0.07 2.01 7.41 -52.49 -0.39 1.63 16 9 N -0.60 -12.75 2.14 -164.52 -0.35 -13.10 16 10 C 0.14 2.79 4.73 -3.71 -0.02 2.77 16 11 C -0.14 -2.22 6.08 -26.61 -0.16 -2.38 16 12 C -0.11 -1.58 5.88 -26.69 -0.16 -1.73 16 13 C -0.13 -1.94 5.40 -26.39 -0.14 -2.09 16 14 C 0.15 2.78 3.03 -67.38 -0.20 2.58 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 16 C 0.14 2.62 4.55 -4.04 -0.02 2.60 16 17 N -0.67 -13.80 4.17 -61.25 -0.26 -14.05 16 18 C 0.56 11.76 6.74 -12.33 -0.08 11.68 16 19 O -0.54 -12.41 17.10 5.33 0.09 -12.32 16 20 C -0.15 -2.81 5.68 -104.55 -0.59 -3.40 16 21 C 0.13 2.39 7.34 -38.80 -0.28 2.10 16 22 F -0.09 -1.82 16.92 2.25 0.04 -1.78 16 23 C 0.06 0.87 11.16 -17.51 -0.20 0.67 16 24 N -0.42 -5.92 10.33 -13.18 -0.14 -6.06 16 25 C 0.05 0.71 11.16 -17.50 -0.20 0.51 16 26 C 0.11 1.67 7.34 -38.81 -0.28 1.39 16 27 F -0.11 -1.77 16.92 2.25 0.04 -1.73 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.06 1.40 7.77 -51.93 -0.40 0.99 16 30 H 0.02 0.47 6.57 -51.93 -0.34 0.13 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.56 7.54 -51.92 -0.39 1.17 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.41 8.76 5.73 -40.82 -0.23 8.53 16 40 H 0.18 2.11 8.06 -52.49 -0.42 1.69 16 41 H 0.18 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -28.92 342.30 -6.87 -35.79 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.23 Total: 7.04 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -2.52 Total: 9.20 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.03 Total: -56.22 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.08 Total: -3.51 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.47 Total: 14.85 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.92 -6.87 -35.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024460820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.783 kcal (2) G-P(sol) polarization free energy of solvation -28.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds