Wall clock time and date at job start Tue Mar 31 2020 14:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00513 * 2 1 4 4 H 1.48502 * 109.47259 * 95.64226 * 3 2 1 5 5 H 1.48493 * 109.47320 * 215.64656 * 3 2 1 6 6 H 1.48503 * 109.46977 * 335.64526 * 3 2 1 7 7 C 1.38820 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00181 * 336.17233 * 7 2 1 9 9 N 1.36936 * 119.99749 * 156.17682 * 7 2 1 10 10 C 1.46929 * 120.62809 * 304.38369 * 9 7 2 11 11 C 1.53189 * 108.77727 * 233.58662 * 10 9 7 12 12 C 1.53039 * 109.31392 * 305.36886 * 11 10 9 13 13 C 1.53039 * 109.53743 * 61.36370 * 12 11 10 14 14 C 1.46920 * 120.63480 * 124.10866 * 9 7 2 15 15 H 1.08994 * 109.58674 * 246.20099 * 14 9 7 16 16 C 1.53002 * 109.58419 * 6.62358 * 14 9 7 17 17 N 1.46501 * 109.47332 * 299.63379 * 16 14 9 18 18 C 1.34776 * 120.00102 * 179.97438 * 17 16 14 19 19 O 1.21543 * 120.00080 * 359.97438 * 18 17 16 20 20 C 1.47853 * 119.99825 * 179.97438 * 18 17 16 21 21 C 1.40123 * 120.95678 * 89.71728 * 20 18 17 22 22 F 1.35103 * 120.52535 * 0.02562 * 21 20 18 23 23 C 1.38439 * 118.95617 * 179.77512 * 21 20 18 24 24 N 1.31765 * 120.92947 * 0.51259 * 23 21 20 25 25 C 1.31777 * 122.14174 * 359.74090 * 24 23 21 26 26 C 1.38432 * 120.92667 * 359.97438 * 25 24 23 27 27 F 1.35103 * 120.51795 * 179.97438 * 26 25 24 28 28 H 0.97007 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.59007 * 353.37903 * 10 9 7 30 30 H 1.09003 * 109.58721 * 113.65742 * 10 9 7 31 31 H 1.09001 * 109.49412 * 65.32295 * 11 10 9 32 32 H 1.09000 * 109.49861 * 185.38175 * 11 10 9 33 33 H 1.09001 * 109.45845 * 181.38342 * 12 11 10 34 34 H 1.08994 * 109.46017 * 301.35725 * 12 11 10 35 35 H 1.09005 * 109.50109 * 58.58689 * 13 12 11 36 36 H 1.09004 * 109.49744 * 178.65064 * 13 12 11 37 37 H 1.09007 * 109.47415 * 59.63288 * 16 14 9 38 38 H 1.08999 * 109.47188 * 179.63189 * 16 14 9 39 39 H 0.97003 * 119.99562 * 0.02562 * 17 16 14 40 40 H 1.08000 * 119.53117 * 180.24949 * 23 21 20 41 41 H 1.07996 * 119.53248 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6170 1.9775 1.3933 5 1 3.4830 1.4774 -0.8159 6 1 1.3932 2.6841 -0.5774 7 6 2.0102 -1.2023 0.0005 8 1 1.5392 -2.0975 0.3788 9 7 3.2920 -1.2530 -0.4785 10 6 3.6014 -0.7932 -1.8392 11 6 4.3394 -1.9115 -2.5818 12 6 5.5640 -2.3368 -1.7684 13 6 5.1133 -2.8754 -0.4086 14 6 4.3851 -1.7627 0.3605 15 1 5.0808 -0.9543 0.5851 16 6 3.8122 -2.3267 1.6623 17 7 3.1070 -1.2657 2.3857 18 6 2.5173 -1.5331 3.5677 19 8 2.5701 -2.6545 4.0334 20 6 1.8060 -0.4621 4.2979 21 6 0.4432 -0.2217 4.0775 22 9 -0.2503 -0.9676 3.1898 23 6 -0.1826 0.7887 4.7874 24 7 0.4872 1.5244 5.6513 25 6 1.7702 1.3365 5.8859 26 6 2.4764 0.3453 5.2263 27 9 3.7918 0.1602 5.4729 28 1 -0.4850 0.8401 -0.0004 29 1 2.6761 -0.5550 -2.3637 30 1 4.2325 0.0942 -1.7904 31 1 3.6731 -2.7647 -2.7094 32 1 4.6589 -1.5500 -3.5592 33 1 6.1046 -3.1155 -2.3063 34 1 6.2176 -1.4774 -1.6198 35 1 4.4398 -3.7196 -0.5567 36 1 5.9842 -3.2004 0.1608 37 1 3.1170 -3.1345 1.4335 38 1 4.6240 -2.7102 2.2805 39 1 3.0638 -0.3710 2.0134 40 1 -1.2336 0.9793 4.6277 41 1 2.2778 1.9647 6.6029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024460820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:54 Heat of formation + Delta-G solvation = -84.941009 kcal Electronic energy + Delta-G solvation = -29204.059167 eV Core-core repulsion = 24947.916166 eV Total energy + Delta-G solvation = -4256.143001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.37754 -50.21734 -41.50935 -40.53005 -39.39880 -35.93102 -34.84702 -33.96658 -32.63982 -32.13414 -31.96336 -28.07896 -26.87877 -25.51275 -24.77995 -23.94231 -22.47410 -22.07390 -20.96031 -19.59036 -19.36811 -19.17190 -18.31497 -17.74542 -17.24812 -17.12938 -17.00509 -16.74933 -16.58112 -16.55394 -15.52512 -15.45218 -15.37381 -14.97678 -14.85531 -14.80064 -14.74249 -14.44295 -14.37046 -13.87631 -13.64578 -13.29507 -13.14389 -12.84619 -12.75080 -12.45445 -12.10603 -11.82285 -11.68218 -11.52582 -11.32312 -11.19951 -11.06256 -10.94372 -10.58290 -10.17548 -10.11070 -8.35843 -8.15415 -5.75073 -0.69335 -0.52511 1.15344 1.25365 1.38051 1.45719 1.93493 2.15094 2.36246 2.40517 2.75841 3.01678 3.10628 3.26144 3.37756 3.45432 3.70364 3.87823 4.13735 4.17879 4.19904 4.28008 4.33842 4.45663 4.51882 4.56403 4.63659 4.73637 4.92183 5.02899 5.09675 5.20244 5.20726 5.24809 5.31616 5.35746 5.39791 5.64181 5.98752 6.29762 6.32510 6.38243 6.89814 7.07635 7.58498 8.18303 8.98036 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.014757 B = 0.005559 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.912688 B = 5036.106296 C = 5818.815137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.279 1.279 5 H -0.235 1.235 6 H -0.302 1.302 7 C -0.254 4.254 8 H 0.020 0.980 9 N -0.611 5.611 10 C 0.137 3.863 11 C -0.130 4.130 12 C -0.103 4.103 13 C -0.121 4.121 14 C 0.151 3.849 15 H 0.048 0.952 16 C 0.137 3.863 17 N -0.672 5.672 18 C 0.556 3.444 19 O -0.570 6.570 20 C -0.175 4.175 21 C 0.099 3.901 22 F -0.116 7.116 23 C 0.076 3.924 24 N -0.419 5.419 25 C 0.083 3.917 26 C 0.102 3.898 27 F -0.113 7.113 28 H 0.262 0.738 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.405 0.595 40 H 0.209 0.791 41 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.616 3.665 6.072 11.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.709 3.291 4 H -0.206 1.206 5 H -0.159 1.159 6 H -0.229 1.229 7 C -0.385 4.385 8 H 0.038 0.962 9 N -0.337 5.337 10 C 0.013 3.987 11 C -0.169 4.169 12 C -0.141 4.141 13 C -0.160 4.160 14 C 0.046 3.954 15 H 0.066 0.934 16 C 0.014 3.986 17 N -0.319 5.319 18 C 0.340 3.660 19 O -0.451 6.451 20 C -0.188 4.188 21 C 0.076 3.924 22 F -0.094 7.094 23 C -0.081 4.081 24 N -0.126 5.126 25 C -0.076 4.076 26 C 0.080 3.920 27 F -0.092 7.092 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.242 0.758 40 H 0.226 0.774 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 8.105 3.570 6.766 11.145 hybrid contribution 0.051 0.104 -1.025 1.031 sum 8.156 3.674 5.741 10.629 Atomic orbital electron populations 1.70031 1.07589 1.27264 1.50475 1.26270 0.95087 0.99843 0.96551 0.86728 0.81269 0.82120 0.79017 1.20577 1.15895 1.22946 1.18054 0.88670 0.92058 1.39677 0.96245 1.44389 1.03589 1.75519 1.10218 1.21370 0.97370 0.95018 0.84941 1.21933 0.97485 0.98745 0.98722 1.21359 0.96695 1.01012 0.94995 1.21942 0.99780 0.97244 0.97060 1.21214 0.89899 0.95384 0.88908 0.93389 1.21417 0.95150 0.89533 0.92476 1.45985 1.52262 1.15107 1.18544 1.17926 0.79123 0.87121 0.81868 1.90729 1.62087 1.23015 1.69262 1.20806 0.95201 1.00561 1.02216 1.19069 0.88587 0.93628 0.91088 1.91682 1.77932 1.74559 1.65255 1.23403 1.02906 0.89889 0.91947 1.67775 1.07906 1.23430 1.13484 1.23629 0.89869 0.95065 0.99014 1.18773 0.79590 0.96849 0.96826 1.91570 1.30699 1.94364 1.92519 0.92831 0.94263 0.95143 0.93556 0.90697 0.90444 0.91614 0.93061 0.89669 0.93660 0.89854 0.75840 0.77440 0.75688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.21 13.97 21.65 0.30 -51.90 16 2 C 0.02 1.24 5.04 84.86 0.43 1.67 16 3 Si 0.88 40.03 26.32 68.60 1.81 41.84 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.24 -9.88 5.12 99.48 0.51 -9.37 16 6 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 7 C -0.25 -13.12 6.40 84.04 0.54 -12.58 16 8 H 0.02 1.22 7.41 -2.91 -0.02 1.20 16 9 N -0.61 -25.98 2.14 -674.43 -1.45 -27.42 16 10 C 0.14 5.29 4.73 86.36 0.41 5.70 16 11 C -0.13 -3.95 6.08 30.67 0.19 -3.76 16 12 C -0.10 -2.62 5.88 30.62 0.18 -2.44 16 13 C -0.12 -3.45 5.40 30.82 0.17 -3.28 16 14 C 0.15 5.36 3.03 45.12 0.14 5.49 16 15 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 16 C 0.14 5.30 4.55 86.38 0.39 5.70 16 17 N -0.67 -28.35 4.17 -465.96 -1.94 -30.29 16 18 C 0.56 24.14 6.74 86.79 0.58 24.72 16 19 O -0.57 -27.46 17.10 -3.85 -0.07 -27.53 16 20 C -0.18 -6.59 5.68 -19.82 -0.11 -6.71 16 21 C 0.10 3.64 7.34 22.78 0.17 3.81 16 22 F -0.12 -5.16 16.92 44.97 0.76 -4.40 16 23 C 0.08 2.15 11.16 84.75 0.95 3.10 16 24 N -0.42 -10.56 10.33 -195.61 -2.02 -12.58 16 25 C 0.08 1.88 11.16 84.75 0.95 2.83 16 26 C 0.10 3.03 7.34 22.77 0.17 3.20 16 27 F -0.11 -3.28 16.92 44.97 0.76 -2.52 16 28 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 29 H 0.04 1.68 7.77 -2.39 -0.02 1.67 16 30 H 0.03 1.14 6.57 -2.39 -0.02 1.13 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.04 2.00 7.54 -2.38 -0.02 1.98 16 38 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.40 17.55 5.73 -92.71 -0.53 17.02 16 40 H 0.21 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.23 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -66.97 342.30 3.64 -63.34 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.34 Total: 24.03 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: 5.13 Total: 27.44 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -5.11 Total: -122.19 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.07 Total: -27.53 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 1.52 Total: -6.92 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.81 Total: 41.84 kcal Total: -66.97 3.64 -63.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024460820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.604 kcal (2) G-P(sol) polarization free energy of solvation -66.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds