Wall clock time and date at job start Tue Mar 31 2020 14:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99799 * 2 1 4 4 H 1.48505 * 109.47185 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47229 * 299.99988 * 3 2 1 6 6 H 1.48506 * 109.47268 * 59.99954 * 3 2 1 7 7 C 1.38810 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00227 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64975 * 348.94222 * 9 7 2 11 11 C 1.54904 * 104.93157 * 204.10026 * 10 9 7 12 12 C 1.55280 * 101.52489 * 323.12324 * 11 10 9 13 13 C 1.47025 * 125.65186 * 168.97091 * 9 7 2 14 14 H 1.09000 * 109.87997 * 59.49804 * 13 9 7 15 15 C 1.53001 * 109.88091 * 298.33657 * 13 9 7 16 16 N 1.46500 * 109.47119 * 174.21799 * 15 13 9 17 17 C 1.34772 * 120.00074 * 184.77054 * 16 15 13 18 18 O 1.21556 * 119.99873 * 0.02562 * 17 16 15 19 19 C 1.47842 * 120.00257 * 179.97438 * 17 16 15 20 20 C 1.40027 * 120.55703 * 354.84083 * 19 17 16 21 21 C 1.38352 * 118.28984 * 179.97438 * 20 19 17 22 22 C 1.38355 * 119.30128 * 359.97438 * 21 20 19 23 23 N 1.31921 * 121.08196 * 0.02562 * 22 21 20 24 24 C 1.31701 * 121.87811 * 359.67531 * 23 22 21 25 25 C 1.50700 * 119.71921 * 180.29159 * 24 23 22 26 26 F 1.39895 * 109.47068 * 123.00349 * 25 24 23 27 27 F 1.39906 * 109.47104 * 243.00675 * 25 24 23 28 28 H 0.97000 * 120.00171 * 359.97438 * 1 2 3 29 29 H 1.09006 * 110.36362 * 322.99118 * 10 9 7 30 30 H 1.08995 * 110.36457 * 85.19853 * 10 9 7 31 31 H 1.09001 * 111.00757 * 81.12031 * 11 10 9 32 32 H 1.09000 * 111.00343 * 204.97499 * 11 10 9 33 33 H 1.09000 * 110.62152 * 277.00689 * 12 11 10 34 34 H 1.09006 * 110.75378 * 153.77861 * 12 11 10 35 35 H 1.09002 * 109.46658 * 294.21430 * 15 13 9 36 36 H 1.08992 * 109.47254 * 54.21583 * 15 13 9 37 37 H 0.97006 * 119.99730 * 4.77347 * 16 15 13 38 38 H 1.08000 * 120.85638 * 359.97438 * 20 19 17 39 39 H 1.08001 * 120.35225 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.45914 * 180.02562 * 22 21 20 41 41 H 1.09005 * 109.47232 * 3.00242 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1222 -2.5443 0.2298 11 6 -0.2911 -3.9973 0.7393 12 6 0.7719 -4.7485 -0.1073 13 6 1.9129 -3.7165 -0.2275 14 1 2.6761 -3.9183 0.5241 15 6 2.5272 -3.7805 -1.6273 16 7 3.2288 -5.0556 -1.7949 17 6 3.9314 -5.2955 -2.9197 18 8 3.9833 -4.4536 -3.7949 19 6 4.6398 -6.5821 -3.0886 20 6 4.6787 -7.5156 -2.0456 21 6 5.3544 -8.7046 -2.2548 22 6 5.9638 -8.9314 -3.4760 23 7 5.9107 -8.0333 -4.4408 24 6 5.2750 -6.8894 -4.2921 25 6 5.2397 -5.9010 -5.4291 26 9 3.9102 -5.6129 -5.7553 27 9 5.8912 -4.7242 -5.0445 28 1 -0.4850 0.8400 0.0004 29 1 -0.4656 -1.8357 0.9836 30 1 -0.6711 -2.4024 -0.7011 31 1 -0.0631 -4.0674 1.8029 32 1 -1.2938 -4.3704 0.5309 33 1 0.3730 -4.9987 -1.0904 34 1 1.1152 -5.6444 0.4101 35 1 1.7378 -3.6992 -2.3745 36 1 3.2322 -2.9587 -1.7526 37 1 3.1875 -5.7273 -1.0962 38 1 4.1937 -7.3127 -1.1022 39 1 5.4057 -9.4480 -1.4730 40 1 6.4916 -9.8589 -3.6422 41 1 5.7425 -6.3275 -6.2971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028018592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:44 Heat of formation + Delta-G solvation = -90.145336 kcal Electronic energy + Delta-G solvation = -27896.632729 eV Core-core repulsion = 23640.264051 eV Total energy + Delta-G solvation = -4256.368677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.86619 -47.88215 -41.76327 -40.29965 -39.19834 -35.95249 -34.51357 -33.90386 -33.21752 -31.43538 -30.37210 -27.97849 -26.76693 -26.05307 -25.07986 -23.35307 -22.18638 -21.71071 -21.20880 -19.41681 -18.77564 -18.58600 -18.22329 -18.16104 -17.51483 -16.99716 -16.51869 -16.42900 -16.10838 -15.98770 -15.70665 -15.18579 -15.10390 -14.65519 -14.48315 -14.23140 -14.18128 -14.07069 -13.95267 -13.65445 -13.42191 -13.24660 -13.04661 -12.89118 -12.72364 -12.35596 -12.00634 -11.87306 -11.70554 -11.46090 -11.41310 -11.24017 -11.12831 -10.73445 -10.69777 -10.44049 -10.11472 -8.90141 -7.88742 -5.26452 -0.60233 -0.04611 1.41800 1.44629 1.53439 1.75432 1.95854 2.35581 2.47426 2.59864 3.20696 3.28873 3.31427 3.50045 3.69899 3.73248 3.89609 3.93544 3.98227 4.03663 4.11550 4.23898 4.27782 4.37709 4.41942 4.54845 4.71796 4.82138 4.93848 4.95897 4.99139 5.13575 5.19196 5.29884 5.43202 5.46775 5.53594 5.67210 5.78751 6.22401 6.43148 6.59820 7.07804 7.13384 7.75070 8.38954 9.20620 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.003432 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.392093 B = 8156.820716 C = 9205.218399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.296 1.296 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.612 5.612 10 C 0.169 3.831 11 C -0.132 4.132 12 C -0.114 4.114 13 C 0.149 3.851 14 H 0.054 0.946 15 C 0.131 3.869 16 N -0.696 5.696 17 C 0.538 3.462 18 O -0.557 6.557 19 C -0.167 4.167 20 C -0.043 4.043 21 C -0.136 4.136 22 C 0.119 3.881 23 N -0.478 5.478 24 C 0.080 3.920 25 C 0.323 3.677 26 F -0.204 7.204 27 F -0.203 7.203 28 H 0.247 0.753 29 H 0.044 0.956 30 H -0.013 1.013 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.036 0.964 36 H 0.034 0.966 37 H 0.415 0.585 38 H 0.176 0.824 39 H 0.198 0.802 40 H 0.210 0.790 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.406 -25.654 -1.869 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.223 1.223 6 H -0.213 1.213 7 C -0.367 4.367 8 H 0.093 0.907 9 N -0.336 5.336 10 C 0.044 3.956 11 C -0.171 4.171 12 C -0.152 4.152 13 C 0.041 3.959 14 H 0.072 0.928 15 C 0.004 3.996 16 N -0.350 5.350 17 C 0.324 3.676 18 O -0.436 6.436 19 C -0.172 4.172 20 C -0.069 4.069 21 C -0.155 4.155 22 C -0.038 4.038 23 N -0.187 5.187 24 C -0.060 4.060 25 C 0.268 3.732 26 F -0.185 7.185 27 F -0.185 7.185 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.005 0.995 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.253 0.747 38 H 0.193 0.807 39 H 0.215 0.785 40 H 0.227 0.773 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.774 -24.934 -3.247 27.356 hybrid contribution -0.392 1.905 0.627 2.044 sum 10.381 -23.029 -2.620 25.396 Atomic orbital electron populations 1.70141 1.06158 1.25214 1.57851 1.25605 0.96527 1.00846 1.02362 0.85136 0.78214 0.79993 0.76783 1.19405 1.22311 1.21273 1.19331 0.90722 0.83720 1.42892 0.90656 1.44782 1.05091 1.01452 1.82285 1.21367 0.83656 0.94109 0.96504 1.22885 0.99371 0.95137 0.99678 1.22665 0.94706 0.97341 1.00460 1.21354 0.95798 0.86630 0.92090 0.92811 1.21741 0.94502 0.84086 0.99225 1.45617 1.50700 1.19137 1.19514 1.18614 0.79420 0.87085 0.82488 1.90888 1.62460 1.48031 1.42187 1.20779 1.02843 0.96222 0.97391 1.22268 0.94757 0.91929 0.97951 1.22796 0.95367 0.97544 0.99774 1.23842 0.94075 0.97729 0.88151 1.67366 1.15753 1.00932 1.34691 1.21673 0.95965 0.94402 0.93913 1.20355 0.76675 0.80190 0.95951 1.92996 1.37999 1.94246 1.93263 1.93003 1.80919 1.51427 1.93113 0.94325 0.93763 0.99466 0.90967 0.89875 0.91652 0.87147 0.94508 0.94792 0.74715 0.80703 0.78505 0.77330 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.45 10.44 21.65 0.23 -57.22 16 2 C -0.06 -3.47 5.48 84.86 0.46 -3.00 16 3 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.24 -13.40 9.71 84.03 0.82 -12.59 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.61 -30.73 3.13 -668.26 -2.09 -32.82 16 10 C 0.17 8.17 5.48 86.85 0.48 8.64 16 11 C -0.13 -4.42 7.10 32.03 0.23 -4.19 16 12 C -0.11 -3.26 6.14 31.83 0.20 -3.07 16 13 C 0.15 5.57 3.21 45.34 0.15 5.71 16 14 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 15 C 0.13 5.11 5.11 86.38 0.44 5.55 16 16 N -0.70 -20.02 5.37 -465.98 -2.50 -22.52 16 17 C 0.54 17.59 7.54 86.79 0.65 18.25 16 18 O -0.56 -23.84 11.39 -3.89 -0.04 -23.89 16 19 C -0.17 -4.00 5.85 -19.99 -0.12 -4.11 16 20 C -0.04 -0.55 9.64 22.73 0.22 -0.34 16 21 C -0.14 -0.91 10.10 22.32 0.23 -0.68 16 22 C 0.12 1.16 11.17 84.71 0.95 2.11 16 23 N -0.48 -9.03 10.24 -182.84 -1.87 -10.90 16 24 C 0.08 1.98 6.31 42.89 0.27 2.25 16 25 C 0.32 9.22 5.02 71.24 0.36 9.57 16 26 F -0.20 -7.10 14.94 44.97 0.67 -6.43 16 27 F -0.20 -7.19 15.13 44.97 0.68 -6.51 16 28 H 0.25 14.63 8.31 -92.71 -0.77 13.85 16 29 H 0.04 2.43 6.66 -2.38 -0.02 2.42 16 30 H -0.01 -0.69 8.12 -2.39 -0.02 -0.71 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.06 1.89 7.75 -2.39 -0.02 1.87 16 34 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.04 1.63 8.00 -2.39 -0.02 1.61 16 36 H 0.03 1.59 7.82 -2.39 -0.02 1.57 16 37 H 0.41 7.90 6.43 -92.70 -0.60 7.31 16 38 H 0.18 1.11 6.55 -2.91 -0.02 1.09 16 39 H 0.20 -0.51 8.06 -2.91 -0.02 -0.53 16 40 H 0.21 0.24 8.06 -2.91 -0.02 0.21 16 41 H 0.15 3.12 8.11 -2.38 -0.02 3.10 16 Total: -1.00 -83.99 343.65 2.90 -81.10 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 0.48 Total: 5.77 kcal Atomic # 6 Polarization: 18.78 SS G_CDS: 5.32 Total: 24.11 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -6.24 Total: -123.46 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.04 Total: -23.89 kcal Atomic # 9 Polarization: -14.29 SS G_CDS: 1.35 Total: -12.94 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -83.99 2.90 -81.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028018592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.047 kcal (2) G-P(sol) polarization free energy of solvation -83.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds