Wall clock time and date at job start Tue Mar 31 2020 14:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48500 * 109.46927 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47071 * 300.00156 * 3 2 1 6 6 H 1.48506 * 109.46899 * 59.99947 * 3 2 1 7 7 C 1.38808 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00175 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00119 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.64948 * 10.95163 * 9 7 2 11 11 C 1.54907 * 104.83172 * 155.89138 * 10 9 7 12 12 C 1.55153 * 101.58335 * 37.01261 * 11 10 9 13 13 C 1.47024 * 125.64954 * 190.97232 * 9 7 2 14 14 H 1.08996 * 110.01459 * 300.53199 * 13 9 7 15 15 C 1.52996 * 109.88005 * 61.62432 * 13 9 7 16 16 N 1.46501 * 109.47442 * 183.69777 * 15 13 9 17 17 C 1.34774 * 120.00529 * 185.07429 * 16 15 13 18 18 O 1.21551 * 119.99943 * 359.97438 * 17 16 15 19 19 C 1.47845 * 120.00191 * 180.02562 * 17 16 15 20 20 C 1.40025 * 120.55665 * 5.09115 * 19 17 16 21 21 C 1.38359 * 118.28620 * 179.97438 * 20 19 17 22 22 C 1.38353 * 119.30270 * 359.97438 * 21 20 19 23 23 N 1.31922 * 121.07957 * 0.02562 * 22 21 20 24 24 C 1.31696 * 121.88060 * 359.97438 * 23 22 21 25 25 C 1.50702 * 119.71543 * 180.02562 * 24 23 22 26 26 F 1.39900 * 109.46964 * 117.45556 * 25 24 23 27 27 F 1.39904 * 109.47186 * 237.45300 * 25 24 23 28 28 H 0.97009 * 119.99653 * 0.02562 * 1 2 3 29 29 H 1.09006 * 110.36166 * 37.05156 * 10 9 7 30 30 H 1.08993 * 110.45811 * 274.78146 * 10 9 7 31 31 H 1.09006 * 111.00717 * 278.93143 * 11 10 9 32 32 H 1.09001 * 111.00421 * 155.08496 * 11 10 9 33 33 H 1.09006 * 110.71517 * 206.13561 * 12 11 10 34 34 H 1.08996 * 110.72150 * 82.86297 * 12 11 10 35 35 H 1.08999 * 109.47224 * 63.69873 * 15 13 9 36 36 H 1.08998 * 109.47287 * 303.70006 * 15 13 9 37 37 H 0.97010 * 119.99309 * 5.07241 * 16 15 13 38 38 H 1.08004 * 120.85946 * 0.02562 * 20 19 17 39 39 H 1.07992 * 120.34512 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.46035 * 180.29778 * 22 21 20 41 41 H 1.08998 * 109.47588 * 357.45076 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1226 -2.5441 -0.2276 11 6 -0.2893 -3.9972 -0.7377 12 6 0.7714 -4.7484 0.1095 13 6 1.9127 -3.7165 0.2285 14 1 2.6766 -3.9204 -0.5218 15 6 2.5280 -3.7802 1.6278 16 7 3.1870 -5.0755 1.8130 17 6 3.7132 -5.3988 3.0110 18 8 3.6414 -4.6155 3.9376 19 6 4.3787 -6.7057 3.1977 20 6 4.5633 -7.5719 2.1131 21 6 5.1923 -8.7830 2.3410 22 6 5.6152 -9.0962 3.6205 23 7 5.4278 -8.2600 4.6235 24 6 4.8344 -7.0961 4.4571 25 6 4.6461 -6.1781 5.6374 26 9 5.3523 -4.9899 5.4213 27 9 3.2857 -5.8906 5.7922 28 1 -0.4850 0.8402 -0.0004 29 1 -0.4664 -1.8356 -0.9813 30 1 -0.6722 -2.4033 0.7030 31 1 -0.0607 -4.0667 -1.8013 32 1 -1.2917 -4.3716 -0.5301 33 1 1.1141 -5.6445 -0.4080 34 1 0.3732 -4.9983 1.0929 35 1 1.7437 -3.6615 2.3753 36 1 3.2603 -2.9807 1.7395 37 1 3.2446 -5.7005 1.0733 38 1 4.2241 -7.3014 1.1240 39 1 5.3522 -9.4761 1.5284 40 1 6.1108 -10.0388 3.8003 41 1 5.0196 -6.6639 6.5388 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028018593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:47 Heat of formation + Delta-G solvation = -65.800698 kcal Electronic energy + Delta-G solvation = -27906.154693 eV Core-core repulsion = 23650.841679 eV Total energy + Delta-G solvation = -4255.313015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.73268 -46.71330 -40.90398 -39.10438 -37.61368 -34.53911 -33.21744 -32.51963 -32.36724 -29.71500 -28.75678 -27.00496 -25.25456 -24.67158 -23.76500 -22.48286 -20.81348 -20.18333 -19.65576 -18.32905 -17.68938 -17.44954 -17.03261 -16.67192 -16.27849 -15.66560 -15.38733 -15.22232 -14.93589 -14.53281 -14.18182 -13.98113 -13.81696 -13.52853 -13.36058 -13.17932 -13.10288 -12.88016 -12.29398 -12.09768 -11.92442 -11.78056 -11.39256 -11.34604 -10.97030 -10.81702 -10.43867 -10.29488 -10.25056 -10.10785 -9.96736 -9.87946 -9.73617 -9.67534 -9.63169 -8.73853 -8.61288 -6.89440 -5.76715 -3.13941 0.17994 0.60058 2.73740 3.15645 3.20000 3.39729 3.46307 3.46676 3.47978 4.01808 4.19831 4.27240 4.36709 4.47024 4.59641 4.80279 4.93730 5.09402 5.10157 5.30084 5.35791 5.42924 5.46725 5.54065 5.59265 5.77002 5.95979 6.00624 6.09132 6.19752 6.41835 6.50393 6.54989 6.64657 6.75430 7.00082 7.26199 7.51810 7.57012 7.62601 7.78769 8.23580 8.31408 9.15782 9.76348 10.41706 11.33847 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.016125 B = 0.003381 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.016076 B = 8279.197973 C = 9186.478826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.589 5.589 10 C 0.169 3.831 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.109 3.891 16 N -0.713 5.713 17 C 0.542 3.458 18 O -0.505 6.505 19 C -0.140 4.140 20 C -0.047 4.047 21 C -0.158 4.158 22 C 0.116 3.884 23 N -0.463 5.463 24 C 0.099 3.901 25 C 0.337 3.663 26 F -0.180 7.180 27 F -0.182 7.182 28 H 0.253 0.747 29 H 0.081 0.919 30 H 0.023 0.977 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.393 0.607 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.169 0.831 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.806 -21.209 3.691 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.199 4.199 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.361 4.361 8 H 0.095 0.905 9 N -0.313 5.313 10 C 0.044 3.956 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.015 4.015 16 N -0.365 5.365 17 C 0.326 3.674 18 O -0.381 6.381 19 C -0.145 4.145 20 C -0.074 4.074 21 C -0.178 4.178 22 C -0.042 4.042 23 N -0.172 5.172 24 C -0.042 4.042 25 C 0.283 3.717 26 F -0.161 7.161 27 F -0.163 7.163 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.227 0.773 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.186 0.814 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.938 -20.522 5.174 22.974 hybrid contribution 0.177 0.773 -1.255 1.484 sum 9.115 -19.749 3.919 22.101 Atomic orbital electron populations 1.69943 1.04995 1.25153 1.56181 1.24864 0.95702 0.97859 1.01512 0.86053 0.78886 0.83605 0.77269 1.20382 1.21708 1.21565 1.19052 0.90481 0.82181 1.44412 0.90466 1.44515 1.04488 1.00206 1.82074 1.21548 0.84327 0.90686 0.99029 1.23009 0.97260 0.99536 0.98889 1.22623 0.97016 0.96884 0.99982 1.21116 0.94159 0.88049 0.92307 0.94526 1.22339 0.96898 0.82195 1.00117 1.45990 1.58077 1.20743 1.11646 1.17965 0.79792 0.85749 0.83892 1.90913 1.56877 1.50402 1.39907 1.21044 1.01663 0.97018 0.94805 1.21884 0.94039 0.92660 0.98791 1.22262 0.98888 0.97482 0.99142 1.22980 0.94965 0.98101 0.88118 1.67335 1.12408 1.02237 1.35179 1.21916 0.95163 0.93125 0.93965 1.19794 0.75682 0.80957 0.95308 1.93065 1.77988 1.48981 1.96086 1.93062 1.32904 1.94098 1.96225 0.93643 0.90111 0.95884 0.92280 0.92330 0.92500 0.91777 0.91229 0.91169 0.77324 0.83515 0.83353 0.81411 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 10.44 55.49 0.58 -25.99 16 2 C 0.00 -0.07 5.48 -17.43 -0.10 -0.16 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.23 -6.35 9.75 -15.06 -0.15 -6.49 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.59 -14.45 3.13 -162.57 -0.51 -14.96 16 10 C 0.17 3.99 5.48 -2.53 -0.01 3.98 16 11 C -0.15 -2.67 7.08 -24.59 -0.17 -2.84 16 12 C -0.13 -2.05 6.16 -24.90 -0.15 -2.21 16 13 C 0.15 2.93 3.20 -66.95 -0.21 2.72 16 14 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 15 C 0.11 2.08 5.09 -4.04 -0.02 2.06 16 16 N -0.71 -10.54 5.30 -61.25 -0.32 -10.87 16 17 C 0.54 8.74 7.55 -12.33 -0.09 8.65 16 18 O -0.51 -10.16 11.38 5.32 0.06 -10.10 16 19 C -0.14 -1.77 5.85 -104.82 -0.61 -2.38 16 20 C -0.05 -0.41 9.64 -38.87 -0.37 -0.78 16 21 C -0.16 -1.00 10.10 -39.49 -0.40 -1.40 16 22 C 0.12 0.85 11.17 -17.47 -0.20 0.65 16 23 N -0.46 -4.94 10.24 -9.15 -0.09 -5.04 16 24 C 0.10 1.26 6.31 -82.17 -0.52 0.74 16 25 C 0.34 4.63 5.02 36.01 0.18 4.81 16 26 F -0.18 -2.97 15.12 2.25 0.03 -2.94 16 27 F -0.18 -2.98 14.94 2.25 0.03 -2.95 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.08 2.13 6.66 -51.93 -0.35 1.79 16 30 H 0.02 0.60 8.13 -51.93 -0.42 0.17 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.04 7.79 -51.93 -0.40 0.64 16 35 H 0.07 1.49 8.05 -51.93 -0.42 1.08 16 36 H 0.07 1.52 7.88 -51.93 -0.41 1.11 16 37 H 0.39 4.39 6.51 -40.82 -0.27 4.12 16 38 H 0.15 0.88 6.55 -52.48 -0.34 0.54 16 39 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 40 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.12 1.20 8.11 -51.93 -0.42 0.78 16 LS Contribution 343.81 15.07 5.18 5.18 Total: -1.00 -34.21 343.81 -8.01 -42.22 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.11 Total: 0.99 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -2.83 Total: 7.33 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.35 Total: -56.86 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.06 Total: -10.10 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.07 Total: -5.89 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.21 -8.01 -42.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028018593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.584 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds