Wall clock time and date at job start Tue Mar 31 2020 14:48:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09002 * 109.52313 * 2 1
4 4 C 1.53187 * 109.49497 * 120.08230 * 2 1 3
5 5 N 1.46929 * 108.77499 * 174.58585 * 4 2 1
6 6 C 1.34781 * 120.62702 * 126.40979 * 5 4 2
7 7 O 1.21689 * 120.00552 * 351.31197 * 6 5 4
8 8 C 1.46678 * 119.99558 * 171.30959 * 6 5 4
9 9 C 1.37893 * 126.22361 * 332.18247 * 8 6 5
10 10 C 1.39889 * 107.09441 * 179.84781 * 9 8 6
11 11 Cl 1.73596 * 126.07189 * 180.12457 * 10 9 8
12 12 C 1.35516 * 107.85001 * 0.41482 * 10 9 8
13 13 N 1.35633 * 108.85144 * 359.74087 * 12 10 9
14 14 C 1.46503 * 125.67371 * 179.97438 * 13 12 10
15 15 C 1.46924 * 118.73956 * 306.39059 * 5 4 2
16 16 C 1.53194 * 108.77319 * 53.60889 * 15 5 4
17 17 C 1.53035 * 109.49587 * 239.91857 * 2 1 3
18 18 H 1.09003 * 109.46274 * 58.66743 * 17 2 1
19 19 N 1.46498 * 109.46325 * 298.70221 * 17 2 1
20 20 C 1.36936 * 120.00162 * 154.93086 * 19 17 2
21 21 H 1.08003 * 119.99830 * 0.02562 * 20 19 17
22 22 C 1.38807 * 120.00138 * 180.02562 * 20 19 17
23 23 N 1.31615 * 120.00014 * 0.02562 * 22 20 19
24 24 Si 1.86804 * 119.99988 * 179.97438 * 22 20 19
25 25 H 1.48503 * 109.47076 * 0.02562 * 24 22 20
26 26 H 1.48500 * 109.47005 * 120.00067 * 24 22 20
27 27 H 1.48498 * 109.47122 * 239.99886 * 24 22 20
28 28 H 1.09000 * 109.46969 * 180.08112 * 1 2 3
29 29 H 1.09004 * 109.47053 * 300.08336 * 1 2 3
30 30 H 1.09003 * 109.46986 * 60.07733 * 1 2 3
31 31 H 1.09002 * 109.59311 * 54.79756 * 4 2 1
32 32 H 1.09007 * 109.70665 * 294.43862 * 4 2 1
33 33 H 1.08002 * 126.45288 * 359.97438 * 9 8 6
34 34 H 1.08000 * 125.57069 * 179.76575 * 12 10 9
35 35 H 1.08994 * 109.47387 * 264.59961 * 14 13 12
36 36 H 1.08999 * 109.46984 * 24.60271 * 14 13 12
37 37 H 1.09000 * 109.46792 * 144.59830 * 14 13 12
38 38 H 1.08995 * 109.58751 * 293.82030 * 15 5 4
39 39 H 1.08999 * 109.58487 * 173.39262 * 15 5 4
40 40 H 1.08997 * 109.49946 * 185.41571 * 16 15 5
41 41 H 1.08999 * 109.52706 * 65.33112 * 16 15 5
42 42 H 0.97000 * 119.99734 * 334.93794 * 19 17 2
43 43 H 0.96999 * 119.99891 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8943 1.0273 0.0000
4 6 2.0413 -0.7238 1.2495
5 7 3.5046 -0.8292 1.1696
6 6 4.2810 -0.3864 2.1784
7 8 3.7879 0.2466 3.0932
8 6 5.7206 -0.6676 2.1735
9 6 6.3379 -1.7474 1.5782
10 6 7.7106 -1.6184 1.8150
11 17 8.9476 -2.7119 1.2787
12 6 7.9023 -0.4916 2.5431
13 7 6.7003 0.0951 2.7674
14 6 6.4811 1.3343 3.5176
15 6 4.1053 -1.4268 -0.0307
16 6 3.5709 -0.6950 -1.2660
17 6 2.0408 -0.7231 -1.2483
18 1 1.6582 -0.2245 -2.1389
19 7 1.5784 -2.1131 -1.2308
20 6 1.4468 -2.8057 -2.4047
21 1 1.6844 -2.3275 -3.3434
22 6 1.0082 -4.1226 -2.3881
23 7 0.7182 -4.7053 -1.2442
24 14 0.8280 -5.0673 -3.9896
25 1 1.2139 -4.1929 -5.1262
26 1 1.7110 -6.2610 -3.9621
27 1 -0.5833 -5.4992 -4.1535
28 1 -0.3633 -1.0277 0.0015
29 1 -0.3633 0.5151 0.8893
30 1 -0.3633 0.5126 -0.8907
31 1 1.6052 -1.7216 1.2981
32 1 1.7637 -0.1601 2.1403
33 1 5.8532 -2.5419 1.0303
34 1 8.8564 -0.1213 2.8879
35 1 6.2288 1.0940 4.5503
36 1 7.3888 1.9373 3.4961
37 1 5.6626 1.8935 3.0642
38 1 3.8376 -2.4818 -0.0867
39 1 5.1896 -1.3246 0.0138
40 1 3.9334 -1.1896 -2.1671
41 1 3.9159 0.3389 -1.2546
42 1 1.3653 -2.5427 -0.3876
43 1 0.4113 -5.6254 -1.2326
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001036102926.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:48:22
Heat of formation + Delta-G solvation = 28.801956 kcal
Electronic energy + Delta-G solvation = -26282.737357 eV
Core-core repulsion = 22583.323301 eV
Total energy + Delta-G solvation = -3699.414055 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.130 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.67154 -39.61385 -37.58056 -36.44432 -34.50255 -33.13506 -32.56690 -31.42494
-29.62983 -29.17413 -26.71449 -26.16921 -25.12602 -23.54597 -21.97773 -21.71993
-20.84340 -19.39226 -18.48562 -17.34608 -17.10771 -16.36067 -15.76116 -15.57649
-14.92670 -14.54409 -14.35673 -14.15929 -14.00972 -13.79477 -13.38677 -13.28286
-13.14914 -12.99632 -12.82603 -12.56141 -12.49364 -12.04969 -11.64108 -11.49747
-11.32960 -11.17370 -10.91965 -10.90061 -10.77683 -10.50638 -10.44066 -10.15548
-9.84108 -9.80325 -9.55772 -8.95168 -8.69167 -8.44840 -8.16629 -6.97468
-5.79128 -3.07471 1.38579 2.00821 2.34993 2.66944 3.25981 3.39982
3.41997 3.48360 3.50197 4.52449 4.57788 4.61408 4.72697 5.00036
5.13757 5.20144 5.29873 5.31460 5.35938 5.52020 5.56531 5.61995
5.73303 5.76677 5.86324 5.91283 6.03777 6.09566 6.22511 6.30718
6.35054 6.40824 6.48848 6.60087 6.65353 6.69959 6.76457 6.87489
6.93064 6.99147 7.62635 7.69666 8.25684 8.39378 9.51286 10.07527
10.42693 11.43349
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.012497 B = 0.004049 C = 0.003248
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2240.028658 B = 6912.990282 C = 8618.719328
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.107 4.107
3 H 0.065 0.935
4 C 0.121 3.879
5 N -0.584 5.584
6 C 0.585 3.415
7 O -0.557 6.557
8 C -0.025 4.025
9 C -0.131 4.131
10 C -0.121 4.121
11 Cl -0.051 7.051
12 C 0.024 3.976
13 N -0.407 5.407
14 C 0.076 3.924
15 C 0.097 3.903
16 C -0.149 4.149
17 C 0.178 3.822
18 H 0.051 0.949
19 N -0.718 5.718
20 C -0.237 4.237
21 H 0.070 0.930
22 C -0.011 4.011
23 N -0.932 5.932
24 Si 0.903 3.097
25 H -0.281 1.281
26 H -0.292 1.292
27 H -0.293 1.293
28 H 0.071 0.929
29 H 0.043 0.957
30 H 0.053 0.947
31 H 0.079 0.921
32 H 0.085 0.915
33 H 0.162 0.838
34 H 0.176 0.824
35 H 0.082 0.918
36 H 0.085 0.915
37 H 0.091 0.909
38 H 0.087 0.913
39 H 0.089 0.911
40 H 0.075 0.925
41 H 0.047 0.953
42 H 0.384 0.616
43 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.140 11.547 7.866 19.180
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.127 4.127
3 H 0.084 0.916
4 C -0.001 4.001
5 N -0.315 5.315
6 C 0.373 3.627
7 O -0.438 6.438
8 C -0.139 4.139
9 C -0.157 4.157
10 C -0.154 4.154
11 Cl -0.023 7.023
12 C -0.112 4.112
13 N -0.081 5.081
14 C -0.065 4.065
15 C -0.025 4.025
16 C -0.190 4.190
17 C 0.067 3.933
18 H 0.069 0.931
19 N -0.361 5.361
20 C -0.368 4.368
21 H 0.088 0.912
22 C -0.207 4.207
23 N -0.580 5.580
24 Si 0.734 3.266
25 H -0.206 1.206
26 H -0.220 1.220
27 H -0.220 1.220
28 H 0.090 0.910
29 H 0.062 0.938
30 H 0.072 0.928
31 H 0.097 0.903
32 H 0.103 0.897
33 H 0.180 0.820
34 H 0.193 0.807
35 H 0.101 0.899
36 H 0.104 0.896
37 H 0.110 0.890
38 H 0.105 0.895
39 H 0.107 0.893
40 H 0.094 0.906
41 H 0.066 0.934
42 H 0.219 0.781
43 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 12.852 12.053 8.306 19.480
hybrid contribution 0.084 -0.965 -0.744 1.222
sum 12.936 11.088 7.561 18.641
Atomic orbital electron populations
1.21668 0.94150 1.03233 1.00449 1.21696 0.96522 0.98835 0.95681
0.91639 1.21712 0.77733 1.01792 0.98836 1.47817 1.07044 1.59252
1.17373 1.16892 0.84040 0.79310 0.82415 1.90773 1.75067 1.41305
1.36623 1.20124 0.90158 0.96688 1.06967 1.21527 0.91689 0.99459
1.03031 1.19920 0.90301 0.96334 1.08831 1.98325 1.52348 1.62309
1.89283 1.21634 0.89575 0.95655 1.04340 1.43746 1.05202 1.19784
1.39330 1.22170 1.03695 0.83437 0.97157 1.22291 0.98000 0.98938
0.83263 1.22524 1.00322 0.98620 0.97532 1.20227 0.90868 0.87379
0.94782 0.93124 1.42475 1.78981 1.07688 1.06940 1.19258 1.37100
0.93880 0.86574 0.91205 1.24688 1.02258 0.97169 0.96557 1.69653
1.51736 1.13019 1.23609 0.86183 0.77263 0.80012 0.83095 1.20644
1.21956 1.22013 0.90981 0.93779 0.92770 0.90327 0.89685 0.82012
0.80671 0.89926 0.89586 0.89009 0.89474 0.89336 0.90597 0.93444
0.78119 0.93580
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.16 9.05 37.16 0.34 -1.82 16
2 C -0.11 -1.73 2.67 -90.50 -0.24 -1.97 16
3 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16
4 C 0.12 2.01 5.43 -3.71 -0.02 1.99 16
5 N -0.58 -9.46 2.97 -174.31 -0.52 -9.98 16
6 C 0.59 9.52 7.42 -12.85 -0.10 9.42 16
7 O -0.56 -10.04 15.12 5.20 0.08 -9.96 16
8 C -0.03 -0.36 6.33 -81.98 -0.52 -0.88 16
9 C -0.13 -1.80 8.43 -39.09 -0.33 -2.12 16
10 C -0.12 -1.47 6.66 -39.94 -0.27 -1.74 16
11 Cl -0.05 -0.59 29.30 -51.86 -1.52 -2.11 16
12 C 0.02 0.25 11.35 -16.84 -0.19 0.06 16
13 N -0.41 -4.73 3.16 -120.19 -0.38 -5.11 16
14 C 0.08 0.66 10.30 59.85 0.62 1.28 16
15 C 0.10 1.55 4.83 -3.71 -0.02 1.53 16
16 C -0.15 -2.46 5.78 -26.61 -0.15 -2.61 16
17 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16
18 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16
19 N -0.72 -16.21 3.64 -53.39 -0.19 -16.40 16
20 C -0.24 -6.10 9.93 -15.06 -0.15 -6.25 16
21 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16
22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16
23 N -0.93 -26.80 13.06 55.49 0.72 -26.07 16
24 Si 0.90 21.66 29.55 -169.99 -5.02 16.64 16
25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
28 H 0.07 1.32 7.54 -51.93 -0.39 0.92 16
29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
31 H 0.08 1.44 6.64 -51.93 -0.34 1.09 16
32 H 0.08 1.40 7.00 -51.92 -0.36 1.03 16
33 H 0.16 2.24 6.40 -52.49 -0.34 1.90 16
34 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16
35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
36 H 0.09 0.45 8.12 -51.93 -0.42 0.03 16
37 H 0.09 0.91 7.43 -51.93 -0.39 0.52 16
38 H 0.09 1.61 7.74 -51.93 -0.40 1.21 16
39 H 0.09 1.28 4.35 -51.93 -0.23 1.06 16
40 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16
41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
42 H 0.38 9.28 5.93 -40.82 -0.24 9.03 16
43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16
LS Contribution 356.61 15.07 5.37 5.37
Total: -1.00 -29.91 356.61 -8.79 -38.70
By element:
Atomic # 1 Polarization: 15.37 SS G_CDS: -6.04 Total: 9.33 kcal
Atomic # 6 Polarization: 0.88 SS G_CDS: -1.30 Total: -0.41 kcal
Atomic # 7 Polarization: -57.20 SS G_CDS: -0.37 Total: -57.56 kcal
Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Atomic # 17 Polarization: -0.59 SS G_CDS: -1.52 Total: -2.11 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -29.91 -8.79 -38.70 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036102926.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.503 kcal
(2) G-P(sol) polarization free energy of solvation -29.907 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.597 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.802 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds