Wall clock time and date at job start Tue Mar 31 2020 14:48:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09002 * 109.52313 * 2 1
4 4 C 1.53187 * 109.49497 * 120.08230 * 2 1 3
5 5 N 1.46929 * 108.77499 * 174.58585 * 4 2 1
6 6 C 1.34781 * 120.62702 * 126.40979 * 5 4 2
7 7 O 1.21689 * 120.00552 * 351.31197 * 6 5 4
8 8 C 1.46678 * 119.99558 * 171.30959 * 6 5 4
9 9 C 1.37893 * 126.22361 * 332.18247 * 8 6 5
10 10 C 1.39889 * 107.09441 * 179.84781 * 9 8 6
11 11 Cl 1.73596 * 126.07189 * 180.12457 * 10 9 8
12 12 C 1.35516 * 107.85001 * 0.41482 * 10 9 8
13 13 N 1.35633 * 108.85144 * 359.74087 * 12 10 9
14 14 C 1.46503 * 125.67371 * 179.97438 * 13 12 10
15 15 C 1.46924 * 118.73956 * 306.39059 * 5 4 2
16 16 C 1.53194 * 108.77319 * 53.60889 * 15 5 4
17 17 C 1.53035 * 109.49587 * 239.91857 * 2 1 3
18 18 H 1.09003 * 109.46274 * 58.66743 * 17 2 1
19 19 N 1.46498 * 109.46325 * 298.70221 * 17 2 1
20 20 C 1.36936 * 120.00162 * 154.93086 * 19 17 2
21 21 H 1.08003 * 119.99830 * 0.02562 * 20 19 17
22 22 C 1.38807 * 120.00138 * 180.02562 * 20 19 17
23 23 N 1.31615 * 120.00014 * 0.02562 * 22 20 19
24 24 Si 1.86804 * 119.99988 * 179.97438 * 22 20 19
25 25 H 1.48503 * 109.47076 * 0.02562 * 24 22 20
26 26 H 1.48500 * 109.47005 * 120.00067 * 24 22 20
27 27 H 1.48498 * 109.47122 * 239.99886 * 24 22 20
28 28 H 1.09000 * 109.46969 * 180.08112 * 1 2 3
29 29 H 1.09004 * 109.47053 * 300.08336 * 1 2 3
30 30 H 1.09003 * 109.46986 * 60.07733 * 1 2 3
31 31 H 1.09002 * 109.59311 * 54.79756 * 4 2 1
32 32 H 1.09007 * 109.70665 * 294.43862 * 4 2 1
33 33 H 1.08002 * 126.45288 * 359.97438 * 9 8 6
34 34 H 1.08000 * 125.57069 * 179.76575 * 12 10 9
35 35 H 1.08994 * 109.47387 * 264.59961 * 14 13 12
36 36 H 1.08999 * 109.46984 * 24.60271 * 14 13 12
37 37 H 1.09000 * 109.46792 * 144.59830 * 14 13 12
38 38 H 1.08995 * 109.58751 * 293.82030 * 15 5 4
39 39 H 1.08999 * 109.58487 * 173.39262 * 15 5 4
40 40 H 1.08997 * 109.49946 * 185.41571 * 16 15 5
41 41 H 1.08999 * 109.52706 * 65.33112 * 16 15 5
42 42 H 0.97000 * 119.99734 * 334.93794 * 19 17 2
43 43 H 0.96999 * 119.99891 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8943 1.0273 0.0000
4 6 2.0413 -0.7238 1.2495
5 7 3.5046 -0.8292 1.1696
6 6 4.2810 -0.3864 2.1784
7 8 3.7879 0.2466 3.0932
8 6 5.7206 -0.6676 2.1735
9 6 6.3379 -1.7474 1.5782
10 6 7.7106 -1.6184 1.8150
11 17 8.9476 -2.7119 1.2787
12 6 7.9023 -0.4916 2.5431
13 7 6.7003 0.0951 2.7674
14 6 6.4811 1.3343 3.5176
15 6 4.1053 -1.4268 -0.0307
16 6 3.5709 -0.6950 -1.2660
17 6 2.0408 -0.7231 -1.2483
18 1 1.6582 -0.2245 -2.1389
19 7 1.5784 -2.1131 -1.2308
20 6 1.4468 -2.8057 -2.4047
21 1 1.6844 -2.3275 -3.3434
22 6 1.0082 -4.1226 -2.3881
23 7 0.7182 -4.7053 -1.2442
24 14 0.8280 -5.0673 -3.9896
25 1 1.2139 -4.1929 -5.1262
26 1 1.7110 -6.2610 -3.9621
27 1 -0.5833 -5.4992 -4.1535
28 1 -0.3633 -1.0277 0.0015
29 1 -0.3633 0.5151 0.8893
30 1 -0.3633 0.5126 -0.8907
31 1 1.6052 -1.7216 1.2981
32 1 1.7637 -0.1601 2.1403
33 1 5.8532 -2.5419 1.0303
34 1 8.8564 -0.1213 2.8879
35 1 6.2288 1.0940 4.5503
36 1 7.3888 1.9373 3.4961
37 1 5.6626 1.8935 3.0642
38 1 3.8376 -2.4818 -0.0867
39 1 5.1896 -1.3246 0.0138
40 1 3.9334 -1.1896 -2.1671
41 1 3.9159 0.3389 -1.2546
42 1 1.3653 -2.5427 -0.3876
43 1 0.4113 -5.6254 -1.2326
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001036102926.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:48:21
Heat of formation + Delta-G solvation = 12.348078 kcal
Electronic energy + Delta-G solvation = -26283.450850 eV
Core-core repulsion = 22583.323301 eV
Total energy + Delta-G solvation = -3700.127549 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.130 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-42.66272 -40.89520 -38.96810 -37.34526 -35.99962 -34.66254 -33.59259 -33.00741
-30.95606 -30.62801 -27.60878 -27.39252 -26.58538 -25.36117 -23.20791 -23.02420
-21.81716 -20.53980 -19.80427 -19.25513 -18.25893 -17.59050 -16.85696 -16.69334
-16.49949 -15.89695 -15.82258 -15.57014 -15.17218 -14.85594 -14.83074 -14.65845
-14.32694 -14.11021 -14.02470 -13.80923 -13.48814 -13.21971 -12.97808 -12.90595
-12.86635 -12.62728 -12.42483 -12.37645 -12.04310 -11.94890 -11.88133 -11.80953
-11.57064 -11.16639 -11.08551 -10.83328 -9.71462 -9.66243 -9.23151 -8.89502
-7.86714 -5.12586 0.34214 1.12627 1.41355 1.50257 1.51939 1.60112
1.63003 2.08197 2.30209 2.61628 3.41065 3.47984 3.83925 3.88615
3.89856 4.02077 4.06393 4.10500 4.22233 4.33976 4.37271 4.39744
4.52242 4.56755 4.64366 4.70206 4.71849 4.85334 4.85933 4.98612
5.03633 5.14470 5.18876 5.27913 5.29925 5.38983 5.49490 5.60804
5.63727 5.70080 6.05029 6.34218 6.35405 6.98769 7.43194 8.18930
8.42756 9.36748
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.012497 B = 0.004049 C = 0.003248
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2240.028658 B = 6912.990282 C = 8618.719328
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.097 4.097
3 H 0.086 0.914
4 C 0.126 3.874
5 N -0.587 5.587
6 C 0.586 3.414
7 O -0.578 6.578
8 C -0.054 4.054
9 C -0.137 4.137
10 C -0.141 4.141
11 Cl -0.048 7.048
12 C 0.054 3.946
13 N -0.405 5.405
14 C 0.072 3.928
15 C 0.109 3.891
16 C -0.141 4.141
17 C 0.172 3.828
18 H 0.048 0.952
19 N -0.724 5.724
20 C -0.225 4.225
21 H 0.075 0.925
22 C -0.071 4.071
23 N -0.968 5.968
24 Si 0.961 3.039
25 H -0.267 1.267
26 H -0.299 1.299
27 H -0.300 1.300
28 H 0.040 0.960
29 H 0.065 0.935
30 H 0.060 0.940
31 H 0.054 0.946
32 H 0.088 0.912
33 H 0.151 0.849
34 H 0.218 0.782
35 H 0.084 0.916
36 H 0.127 0.873
37 H 0.077 0.923
38 H 0.056 0.944
39 H 0.107 0.893
40 H 0.067 0.933
41 H 0.071 0.929
42 H 0.374 0.626
43 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.271 13.703 7.940 22.001
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.117 4.117
3 H 0.104 0.896
4 C 0.004 3.996
5 N -0.317 5.317
6 C 0.376 3.624
7 O -0.461 6.461
8 C -0.168 4.168
9 C -0.163 4.163
10 C -0.174 4.174
11 Cl -0.019 7.019
12 C -0.084 4.084
13 N -0.078 5.078
14 C -0.068 4.068
15 C -0.013 4.013
16 C -0.182 4.182
17 C 0.064 3.936
18 H 0.066 0.934
19 N -0.365 5.365
20 C -0.357 4.357
21 H 0.093 0.907
22 C -0.263 4.263
23 N -0.620 5.620
24 Si 0.792 3.208
25 H -0.192 1.192
26 H -0.227 1.227
27 H -0.228 1.228
28 H 0.059 0.941
29 H 0.084 0.916
30 H 0.079 0.921
31 H 0.072 0.928
32 H 0.106 0.894
33 H 0.168 0.832
34 H 0.235 0.765
35 H 0.102 0.898
36 H 0.146 0.854
37 H 0.095 0.905
38 H 0.074 0.926
39 H 0.125 0.875
40 H 0.086 0.914
41 H 0.090 0.910
42 H 0.207 0.793
43 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 14.998 14.264 8.359 22.322
hybrid contribution -0.494 -1.550 -0.710 1.775
sum 14.504 12.714 7.649 20.749
Atomic orbital electron populations
1.21601 0.93835 1.01581 1.01874 1.21615 0.96708 0.99265 0.94079
0.89613 1.21575 0.78235 1.00520 0.99275 1.47804 1.06829 1.59415
1.17623 1.17157 0.84962 0.78607 0.81721 1.90749 1.75743 1.42398
1.37170 1.19816 0.89547 0.98102 1.09345 1.21508 0.92757 0.99115
1.02966 1.20022 0.89759 0.97478 1.10101 1.98326 1.51848 1.62385
1.89353 1.22276 0.90403 0.94079 1.01628 1.44013 1.04877 1.20199
1.38704 1.22397 1.05367 0.82528 0.96500 1.22126 0.98993 0.97025
0.83167 1.22405 0.98551 0.99969 0.97276 1.20441 0.92076 0.85262
0.95863 0.93355 1.42578 1.79045 1.09234 1.05614 1.19596 1.34551
0.93867 0.87685 0.90707 1.25340 1.03608 0.98384 0.98963 1.69801
1.53924 1.12834 1.25402 0.85249 0.76378 0.78645 0.80559 1.19155
1.22677 1.22789 0.94083 0.91557 0.92143 0.92764 0.89353 0.83166
0.76521 0.89792 0.85447 0.90462 0.92573 0.87519 0.91440 0.91047
0.79263 0.94422
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.05 9.05 71.98 0.65 -3.40 16
2 C -0.10 -3.04 2.67 -10.72 -0.03 -3.07 16
3 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16
4 C 0.13 4.23 5.43 86.36 0.47 4.70 16
5 N -0.59 -19.01 2.97 -823.61 -2.45 -21.46 16
6 C 0.59 18.80 7.42 86.45 0.64 19.44 16
7 O -0.58 -20.58 15.12 -4.31 -0.07 -20.65 16
8 C -0.05 -1.49 6.33 40.36 0.26 -1.23 16
9 C -0.14 -3.65 8.43 22.59 0.19 -3.46 16
10 C -0.14 -3.16 6.66 22.04 0.15 -3.01 16
11 Cl -0.05 -1.01 29.30 -2.72 -0.08 -1.09 16
12 C 0.05 0.92 11.35 83.48 0.95 1.87 16
13 N -0.41 -8.33 3.16 -534.17 -1.69 -10.02 16
14 C 0.07 1.03 10.30 127.77 1.32 2.35 16
15 C 0.11 3.50 4.83 86.36 0.42 3.91 16
16 C -0.14 -4.54 5.78 30.67 0.18 -4.36 16
17 C 0.17 6.24 2.53 45.02 0.11 6.36 16
18 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16
19 N -0.72 -33.29 3.64 -322.81 -1.18 -34.47 16
20 C -0.22 -11.68 9.93 84.03 0.83 -10.85 16
21 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16
22 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16
23 N -0.97 -57.52 13.06 21.65 0.28 -57.23 16
24 Si 0.96 45.22 29.55 68.60 2.03 47.25 16
25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16
26 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16
27 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16
28 H 0.04 1.52 7.54 -2.39 -0.02 1.50 16
29 H 0.07 1.73 8.14 -2.38 -0.02 1.72 16
30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16
31 H 0.05 2.08 6.64 -2.39 -0.02 2.07 16
32 H 0.09 2.90 7.00 -2.38 -0.02 2.88 16
33 H 0.15 4.25 6.40 -2.91 -0.02 4.23 16
34 H 0.22 1.81 8.06 -2.91 -0.02 1.79 16
35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
36 H 0.13 0.75 8.12 -2.39 -0.02 0.73 16
37 H 0.08 1.37 7.43 -2.39 -0.02 1.36 16
38 H 0.06 2.17 7.74 -2.39 -0.02 2.15 16
39 H 0.11 3.05 4.35 -2.39 -0.01 3.04 16
40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16
41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16
42 H 0.37 18.81 5.93 -92.71 -0.55 18.26 16
43 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16
Total: -1.00 -65.62 356.61 3.94 -61.69
By element:
Atomic # 1 Polarization: 29.67 SS G_CDS: 0.48 Total: 30.15 kcal
Atomic # 6 Polarization: -0.77 SS G_CDS: 6.60 Total: 5.83 kcal
Atomic # 7 Polarization: -118.15 SS G_CDS: -5.03 Total: -123.18 kcal
Atomic # 8 Polarization: -20.58 SS G_CDS: -0.07 Total: -20.65 kcal
Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal
Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal
Total: -65.62 3.94 -61.69 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036102926.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.035 kcal
(2) G-P(sol) polarization free energy of solvation -65.622 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.413 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.687 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.348 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds