Wall clock time and date at job start Tue Mar 31 2020 14:48:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09001 * 109.49967 * 2 1
4 4 C 1.52759 * 109.56310 * 240.03501 * 2 1 3
5 5 N 1.46928 * 109.01096 * 185.55124 * 4 2 1
6 6 C 1.34771 * 120.63177 * 233.58639 * 5 4 2
7 7 O 1.21698 * 120.00247 * 6.15378 * 6 5 4
8 8 C 1.46672 * 119.99860 * 186.15387 * 6 5 4
9 9 C 1.37896 * 126.22612 * 21.25698 * 8 6 5
10 10 C 1.39885 * 107.09358 * 180.02562 * 9 8 6
11 11 Cl 1.73607 * 126.06834 * 180.02562 * 10 9 8
12 12 C 1.35513 * 107.85637 * 359.97438 * 10 9 8
13 13 N 1.35632 * 108.85077 * 0.02562 * 12 10 9
14 14 C 1.46502 * 125.67415 * 179.97438 * 13 12 10
15 15 C 1.46931 * 118.73549 * 53.30635 * 5 4 2
16 16 C 1.53184 * 108.77881 * 306.64695 * 15 5 4
17 17 C 1.53041 * 109.50009 * 120.06811 * 2 1 3
18 18 H 1.08993 * 109.45955 * 301.33726 * 17 2 1
19 19 N 1.46507 * 109.45734 * 61.29516 * 17 2 1
20 20 C 1.36932 * 119.99814 * 205.06674 * 19 17 2
21 21 H 1.08003 * 119.99877 * 0.02562 * 20 19 17
22 22 C 1.38812 * 120.00096 * 180.02562 * 20 19 17
23 23 N 1.31624 * 119.99731 * 359.97438 * 22 20 19
24 24 Si 1.86796 * 120.00198 * 180.02562 * 22 20 19
25 25 H 1.48498 * 109.47776 * 89.99571 * 24 22 20
26 26 H 1.48508 * 109.47205 * 209.99803 * 24 22 20
27 27 H 1.48505 * 109.47012 * 329.99162 * 24 22 20
28 28 H 1.09006 * 109.46746 * 299.93079 * 1 2 3
29 29 H 1.08996 * 109.47564 * 59.92601 * 1 2 3
30 30 H 1.09003 * 109.47195 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.50951 * 65.67146 * 4 2 1
32 32 H 1.08999 * 109.43637 * 305.38729 * 4 2 1
33 33 H 1.07997 * 126.44586 * 359.97438 * 9 8 6
34 34 H 1.08001 * 125.57587 * 180.26755 * 12 10 9
35 35 H 1.09004 * 109.46909 * 95.46697 * 14 13 12
36 36 H 1.09003 * 109.46818 * 215.45819 * 14 13 12
37 37 H 1.08990 * 109.47264 * 335.46355 * 14 13 12
38 38 H 1.09003 * 109.58137 * 66.43698 * 15 5 4
39 39 H 1.08998 * 109.58442 * 186.85811 * 15 5 4
40 40 H 1.09000 * 109.50498 * 174.58537 * 16 15 5
41 41 H 1.09006 * 109.50083 * 294.68533 * 16 15 5
42 42 H 0.96998 * 119.99891 * 25.06808 * 19 17 2
43 43 H 0.96995 * 119.99665 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0415 -0.7189 -1.2470
5 7 3.5045 -0.8294 -1.1695
6 6 4.2810 -0.3860 -2.1779
7 8 3.7816 0.2116 -3.1130
8 6 5.7280 -0.6238 -2.1483
9 6 6.3794 -1.5960 -1.4188
10 6 7.7462 -1.4636 -1.6856
11 17 9.0166 -2.4432 -1.0220
12 6 7.9022 -0.4359 -2.5549
13 7 6.6828 0.0829 -2.8436
14 6 6.4248 1.2084 -3.7453
15 6 4.1053 -1.4267 0.0310
16 6 3.5709 -0.6948 1.2661
17 6 2.0408 -0.7228 1.2485
18 1 1.6582 -0.2240 2.1389
19 7 1.5783 -2.1128 1.2312
20 6 1.4468 -2.8053 2.4052
21 1 1.6837 -2.3265 3.3439
22 6 1.0091 -4.1225 2.3889
23 7 0.7200 -4.7057 1.2449
24 14 0.8291 -5.0668 3.9905
25 1 -0.5434 -4.8782 4.5250
26 1 1.0698 -6.5113 3.7432
27 1 1.8181 -4.5620 4.9766
28 1 -0.3633 0.5128 0.8907
29 1 -0.3634 0.5149 -0.8893
30 1 -0.3634 -1.0277 -0.0005
31 1 1.7645 -0.1500 -2.1345
32 1 1.6020 -1.7152 -1.2972
33 1 5.9206 -2.3221 -0.7641
34 1 8.8434 -0.0893 -2.9556
35 1 6.1743 0.8300 -4.7364
36 1 5.5929 1.7986 -3.3609
37 1 7.3151 1.8339 -3.8095
38 1 3.8375 -2.4818 0.0871
39 1 5.1895 -1.3246 -0.0136
40 1 3.9334 -1.1892 2.1673
41 1 3.9159 0.3391 1.2540
42 1 1.3652 -2.5426 0.3882
43 1 0.4145 -5.6262 1.2335
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001036102928.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:48:27
Heat of formation + Delta-G solvation = 36.884075 kcal
Electronic energy + Delta-G solvation = -26292.893763 eV
Core-core repulsion = 22593.830175 eV
Total energy + Delta-G solvation = -3699.063588 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.130 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.69952 -39.61754 -37.58579 -36.44898 -34.55982 -33.16961 -32.53519 -31.43510
-29.63710 -29.18777 -26.75580 -26.14350 -25.15950 -23.55606 -21.95584 -21.74390
-20.87739 -19.43374 -18.49978 -17.35063 -17.03122 -16.34020 -15.80453 -15.61861
-14.90476 -14.54583 -14.37500 -14.17544 -14.04935 -13.76049 -13.39768 -13.27725
-13.19596 -12.99703 -12.82453 -12.55928 -12.49712 -11.98099 -11.61213 -11.49702
-11.29964 -11.15018 -10.91477 -10.88468 -10.77157 -10.50157 -10.36818 -10.18583
-9.83777 -9.76212 -9.54902 -8.94322 -8.69010 -8.46476 -8.16171 -6.97129
-5.78656 -3.07030 1.36433 2.00649 2.33679 2.66906 3.29976 3.40876
3.42492 3.48438 3.49693 4.52427 4.58117 4.62430 4.72400 5.01423
5.11771 5.20536 5.31261 5.32355 5.36363 5.50562 5.56066 5.61918
5.71380 5.77000 5.88132 5.91541 6.04105 6.09754 6.22639 6.30058
6.34347 6.41358 6.49132 6.59569 6.65122 6.70222 6.76927 6.87369
6.93398 6.99337 7.63340 7.69401 8.26749 8.39850 9.51625 10.07936
10.43144 11.43750
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.012589 B = 0.004039 C = 0.003248
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2223.617929 B = 6931.165755 C = 8619.162698
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.108 4.108
3 H 0.065 0.935
4 C 0.121 3.879
5 N -0.583 5.583
6 C 0.585 3.415
7 O -0.559 6.559
8 C -0.025 4.025
9 C -0.138 4.138
10 C -0.121 4.121
11 Cl -0.051 7.051
12 C 0.025 3.975
13 N -0.407 5.407
14 C 0.076 3.924
15 C 0.084 3.916
16 C -0.149 4.149
17 C 0.178 3.822
18 H 0.051 0.949
19 N -0.718 5.718
20 C -0.238 4.238
21 H 0.069 0.931
22 C -0.011 4.011
23 N -0.932 5.932
24 Si 0.903 3.097
25 H -0.291 1.291
26 H -0.292 1.292
27 H -0.283 1.283
28 H 0.053 0.947
29 H 0.043 0.957
30 H 0.071 0.929
31 H 0.085 0.915
32 H 0.078 0.922
33 H 0.171 0.829
34 H 0.176 0.824
35 H 0.082 0.918
36 H 0.094 0.906
37 H 0.085 0.915
38 H 0.088 0.912
39 H 0.099 0.901
40 H 0.076 0.924
41 H 0.047 0.953
42 H 0.384 0.616
43 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.182 11.511 -8.047 19.262
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.128 4.128
3 H 0.083 0.917
4 C -0.001 4.001
5 N -0.313 5.313
6 C 0.373 3.627
7 O -0.440 6.440
8 C -0.139 4.139
9 C -0.164 4.164
10 C -0.154 4.154
11 Cl -0.023 7.023
12 C -0.112 4.112
13 N -0.080 5.080
14 C -0.065 4.065
15 C -0.038 4.038
16 C -0.190 4.190
17 C 0.067 3.933
18 H 0.069 0.931
19 N -0.361 5.361
20 C -0.369 4.369
21 H 0.087 0.913
22 C -0.207 4.207
23 N -0.580 5.580
24 Si 0.735 3.265
25 H -0.219 1.219
26 H -0.219 1.219
27 H -0.208 1.208
28 H 0.072 0.928
29 H 0.062 0.938
30 H 0.090 0.910
31 H 0.103 0.897
32 H 0.097 0.903
33 H 0.188 0.812
34 H 0.193 0.807
35 H 0.100 0.900
36 H 0.112 0.888
37 H 0.103 0.897
38 H 0.106 0.894
39 H 0.117 0.883
40 H 0.094 0.906
41 H 0.066 0.934
42 H 0.219 0.781
43 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 12.886 11.964 -8.535 19.546
hybrid contribution 0.063 -0.928 0.773 1.209
sum 12.949 11.037 -7.763 18.701
Atomic orbital electron populations
1.21665 0.94126 1.03239 1.00451 1.21624 0.96544 0.98875 0.95754
0.91672 1.21617 0.77790 1.01814 0.98839 1.47783 1.07023 1.59035
1.17443 1.16867 0.84087 0.79082 0.82650 1.90769 1.75073 1.42970
1.35219 1.20111 0.90432 1.00001 1.03344 1.21763 0.91477 1.01026
1.02141 1.19948 0.90066 0.99842 1.05553 1.98326 1.49820 1.69314
1.84793 1.21649 0.89094 0.98044 1.02379 1.43751 1.05091 1.25455
1.33664 1.22189 1.03541 0.87058 0.93703 1.22620 0.98783 0.99001
0.83363 1.22521 1.00294 0.98642 0.97542 1.20228 0.90909 0.87369
0.94761 0.93140 1.42466 1.78992 1.07691 1.06920 1.19213 1.37234
0.93870 0.86554 0.91260 1.24689 1.02260 0.97159 0.96553 1.69647
1.51713 1.13038 1.23646 0.86249 0.77729 0.79401 0.83130 1.21879
1.21888 1.20825 0.92768 0.93777 0.90979 0.89688 0.90346 0.81227
0.80664 0.89977 0.88774 0.89653 0.89401 0.88330 0.90590 0.93411
0.78119 0.93534
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.16 9.05 37.15 0.34 -1.82 16
2 C -0.11 -1.74 2.66 -90.73 -0.24 -1.98 16
3 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
4 C 0.12 2.02 5.40 -3.93 -0.02 2.00 16
5 N -0.58 -9.46 2.98 -174.58 -0.52 -9.98 16
6 C 0.58 9.52 7.53 -12.86 -0.10 9.43 16
7 O -0.56 -10.05 14.80 5.19 0.08 -9.97 16
8 C -0.02 -0.35 6.54 -81.98 -0.54 -0.89 16
9 C -0.14 -1.88 8.54 -39.09 -0.33 -2.21 16
10 C -0.12 -1.47 6.66 -39.94 -0.27 -1.73 16
11 Cl -0.05 -0.58 29.30 -51.86 -1.52 -2.10 16
12 C 0.02 0.26 11.35 -16.84 -0.19 0.06 16
13 N -0.41 -4.73 3.16 -120.19 -0.38 -5.11 16
14 C 0.08 0.66 10.29 59.85 0.62 1.28 16
15 C 0.08 1.34 4.89 -3.71 -0.02 1.32 16
16 C -0.15 -2.46 5.78 -26.61 -0.15 -2.61 16
17 C 0.18 3.27 2.53 -67.88 -0.17 3.10 16
18 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16
19 N -0.72 -16.24 3.64 -53.38 -0.19 -16.44 16
20 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16
21 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16
22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16
23 N -0.93 -26.84 13.06 55.49 0.72 -26.11 16
24 Si 0.90 21.68 29.55 -169.99 -5.02 16.65 16
25 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16
26 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16
27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16
29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
30 H 0.07 1.32 7.54 -51.93 -0.39 0.93 16
31 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16
32 H 0.08 1.44 6.64 -51.93 -0.34 1.09 16
33 H 0.17 2.31 5.68 -52.49 -0.30 2.01 16
34 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16
35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
36 H 0.09 0.95 7.24 -51.93 -0.38 0.57 16
37 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16
38 H 0.09 1.63 7.74 -51.93 -0.40 1.22 16
39 H 0.10 1.41 3.66 -51.93 -0.19 1.22 16
40 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16
41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
42 H 0.38 9.30 5.93 -40.82 -0.24 9.06 16
43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16
LS Contribution 355.16 15.07 5.35 5.35
Total: -1.00 -29.92 355.16 -8.76 -38.69
By element:
Atomic # 1 Polarization: 15.71 SS G_CDS: -5.95 Total: 9.76 kcal
Atomic # 6 Polarization: 0.59 SS G_CDS: -1.32 Total: -0.73 kcal
Atomic # 7 Polarization: -57.27 SS G_CDS: -0.37 Total: -57.64 kcal
Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal
Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal
Atomic # 17 Polarization: -0.58 SS G_CDS: -1.52 Total: -2.10 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -29.92 -8.76 -38.69 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036102928.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.570 kcal
(2) G-P(sol) polarization free energy of solvation -29.923 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.646 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.884 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds