Wall clock time and date at job start Tue Mar 31 2020 14:48:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09001 * 109.49967 * 2 1
4 4 C 1.52759 * 109.56310 * 240.03501 * 2 1 3
5 5 N 1.46928 * 109.01096 * 185.55124 * 4 2 1
6 6 C 1.34771 * 120.63177 * 233.58639 * 5 4 2
7 7 O 1.21698 * 120.00247 * 6.15378 * 6 5 4
8 8 C 1.46672 * 119.99860 * 186.15387 * 6 5 4
9 9 C 1.37896 * 126.22612 * 21.25698 * 8 6 5
10 10 C 1.39885 * 107.09358 * 180.02562 * 9 8 6
11 11 Cl 1.73607 * 126.06834 * 180.02562 * 10 9 8
12 12 C 1.35513 * 107.85637 * 359.97438 * 10 9 8
13 13 N 1.35632 * 108.85077 * 0.02562 * 12 10 9
14 14 C 1.46502 * 125.67415 * 179.97438 * 13 12 10
15 15 C 1.46931 * 118.73549 * 53.30635 * 5 4 2
16 16 C 1.53184 * 108.77881 * 306.64695 * 15 5 4
17 17 C 1.53041 * 109.50009 * 120.06811 * 2 1 3
18 18 H 1.08993 * 109.45955 * 301.33726 * 17 2 1
19 19 N 1.46507 * 109.45734 * 61.29516 * 17 2 1
20 20 C 1.36932 * 119.99814 * 205.06674 * 19 17 2
21 21 H 1.08003 * 119.99877 * 0.02562 * 20 19 17
22 22 C 1.38812 * 120.00096 * 180.02562 * 20 19 17
23 23 N 1.31624 * 119.99731 * 359.97438 * 22 20 19
24 24 Si 1.86796 * 120.00198 * 180.02562 * 22 20 19
25 25 H 1.48498 * 109.47776 * 89.99571 * 24 22 20
26 26 H 1.48508 * 109.47205 * 209.99803 * 24 22 20
27 27 H 1.48505 * 109.47012 * 329.99162 * 24 22 20
28 28 H 1.09006 * 109.46746 * 299.93079 * 1 2 3
29 29 H 1.08996 * 109.47564 * 59.92601 * 1 2 3
30 30 H 1.09003 * 109.47195 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.50951 * 65.67146 * 4 2 1
32 32 H 1.08999 * 109.43637 * 305.38729 * 4 2 1
33 33 H 1.07997 * 126.44586 * 359.97438 * 9 8 6
34 34 H 1.08001 * 125.57587 * 180.26755 * 12 10 9
35 35 H 1.09004 * 109.46909 * 95.46697 * 14 13 12
36 36 H 1.09003 * 109.46818 * 215.45819 * 14 13 12
37 37 H 1.08990 * 109.47264 * 335.46355 * 14 13 12
38 38 H 1.09003 * 109.58137 * 66.43698 * 15 5 4
39 39 H 1.08998 * 109.58442 * 186.85811 * 15 5 4
40 40 H 1.09000 * 109.50498 * 174.58537 * 16 15 5
41 41 H 1.09006 * 109.50083 * 294.68533 * 16 15 5
42 42 H 0.96998 * 119.99891 * 25.06808 * 19 17 2
43 43 H 0.96995 * 119.99665 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0415 -0.7189 -1.2470
5 7 3.5045 -0.8294 -1.1695
6 6 4.2810 -0.3860 -2.1779
7 8 3.7816 0.2116 -3.1130
8 6 5.7280 -0.6238 -2.1483
9 6 6.3794 -1.5960 -1.4188
10 6 7.7462 -1.4636 -1.6856
11 17 9.0166 -2.4432 -1.0220
12 6 7.9022 -0.4359 -2.5549
13 7 6.6828 0.0829 -2.8436
14 6 6.4248 1.2084 -3.7453
15 6 4.1053 -1.4267 0.0310
16 6 3.5709 -0.6948 1.2661
17 6 2.0408 -0.7228 1.2485
18 1 1.6582 -0.2240 2.1389
19 7 1.5783 -2.1128 1.2312
20 6 1.4468 -2.8053 2.4052
21 1 1.6837 -2.3265 3.3439
22 6 1.0091 -4.1225 2.3889
23 7 0.7200 -4.7057 1.2449
24 14 0.8291 -5.0668 3.9905
25 1 -0.5434 -4.8782 4.5250
26 1 1.0698 -6.5113 3.7432
27 1 1.8181 -4.5620 4.9766
28 1 -0.3633 0.5128 0.8907
29 1 -0.3634 0.5149 -0.8893
30 1 -0.3634 -1.0277 -0.0005
31 1 1.7645 -0.1500 -2.1345
32 1 1.6020 -1.7152 -1.2972
33 1 5.9206 -2.3221 -0.7641
34 1 8.8434 -0.0893 -2.9556
35 1 6.1743 0.8300 -4.7364
36 1 5.5929 1.7986 -3.3609
37 1 7.3151 1.8339 -3.8095
38 1 3.8375 -2.4818 0.0871
39 1 5.1895 -1.3246 -0.0136
40 1 3.9334 -1.1892 2.1673
41 1 3.9159 0.3391 1.2540
42 1 1.3652 -2.5426 0.3882
43 1 0.4145 -5.6262 1.2335
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001036102928.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:48:26
Heat of formation + Delta-G solvation = 20.389738 kcal
Electronic energy + Delta-G solvation = -26293.609011 eV
Core-core repulsion = 22593.830175 eV
Total energy + Delta-G solvation = -3699.778837 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.130 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-42.69149 -40.89641 -38.97009 -37.34411 -36.03665 -34.71263 -33.56854 -33.01821
-30.94676 -30.65779 -27.67045 -27.36497 -26.60036 -25.37368 -23.21353 -23.01290
-21.87497 -20.55396 -19.84284 -19.25859 -18.16926 -17.57106 -16.88419 -16.76766
-16.48708 -15.89367 -15.81294 -15.59577 -15.18302 -14.86796 -14.79294 -14.66110
-14.36005 -14.17134 -14.03277 -13.80396 -13.45908 -13.21598 -12.98343 -12.86958
-12.80178 -12.58033 -12.41784 -12.36943 -12.09719 -11.94574 -11.85019 -11.75301
-11.56265 -11.15703 -11.05660 -10.79759 -9.71731 -9.66931 -9.23178 -8.89321
-7.86443 -5.12372 0.32060 1.12804 1.40848 1.51240 1.51892 1.59498
1.63323 2.12125 2.30988 2.61874 3.41046 3.48048 3.84034 3.89075
3.89821 4.01625 4.06438 4.10435 4.20030 4.36082 4.37871 4.40001
4.52391 4.54314 4.64831 4.70827 4.72048 4.84503 4.85540 4.99561
5.03561 5.14415 5.18605 5.28346 5.30251 5.38413 5.49188 5.60572
5.63434 5.69596 6.04819 6.35027 6.35596 6.99987 7.43237 8.19079
8.42989 9.36819
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.012589 B = 0.004039 C = 0.003248
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2223.617929 B = 6931.165755 C = 8619.162698
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.098 4.098
3 H 0.085 0.915
4 C 0.127 3.873
5 N -0.585 5.585
6 C 0.584 3.416
7 O -0.580 6.580
8 C -0.054 4.054
9 C -0.143 4.143
10 C -0.141 4.141
11 Cl -0.047 7.047
12 C 0.054 3.946
13 N -0.405 5.405
14 C 0.072 3.928
15 C 0.095 3.905
16 C -0.141 4.141
17 C 0.172 3.828
18 H 0.048 0.952
19 N -0.723 5.723
20 C -0.226 4.226
21 H 0.075 0.925
22 C -0.071 4.071
23 N -0.968 5.968
24 Si 0.961 3.039
25 H -0.293 1.293
26 H -0.302 1.302
27 H -0.270 1.270
28 H 0.059 0.941
29 H 0.066 0.934
30 H 0.040 0.960
31 H 0.088 0.912
32 H 0.053 0.947
33 H 0.161 0.839
34 H 0.218 0.782
35 H 0.083 0.917
36 H 0.078 0.922
37 H 0.127 0.873
38 H 0.056 0.944
39 H 0.119 0.881
40 H 0.067 0.933
41 H 0.071 0.929
42 H 0.374 0.626
43 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.356 13.571 -8.183 22.067
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.117 4.117
3 H 0.103 0.897
4 C 0.004 3.996
5 N -0.315 5.315
6 C 0.374 3.626
7 O -0.463 6.463
8 C -0.168 4.168
9 C -0.169 4.169
10 C -0.173 4.173
11 Cl -0.018 7.018
12 C -0.084 4.084
13 N -0.077 5.077
14 C -0.068 4.068
15 C -0.027 4.027
16 C -0.182 4.182
17 C 0.063 3.937
18 H 0.066 0.934
19 N -0.365 5.365
20 C -0.358 4.358
21 H 0.093 0.907
22 C -0.263 4.263
23 N -0.620 5.620
24 Si 0.792 3.208
25 H -0.221 1.221
26 H -0.229 1.229
27 H -0.195 1.195
28 H 0.079 0.921
29 H 0.085 0.915
30 H 0.059 0.941
31 H 0.106 0.894
32 H 0.072 0.928
33 H 0.178 0.822
34 H 0.235 0.765
35 H 0.102 0.898
36 H 0.096 0.904
37 H 0.145 0.855
38 H 0.075 0.925
39 H 0.137 0.863
40 H 0.086 0.914
41 H 0.090 0.910
42 H 0.207 0.793
43 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 15.075 14.078 -8.652 22.368
hybrid contribution -0.526 -1.482 0.758 1.746
sum 14.549 12.596 -7.895 20.800
Atomic orbital electron populations
1.21596 0.93820 1.01576 1.01874 1.21542 0.96726 0.99305 0.94167
0.89659 1.21475 0.78326 1.00510 0.99268 1.47773 1.06796 1.59245
1.17717 1.17145 0.85048 0.78387 0.81971 1.90745 1.75748 1.44026
1.35765 1.19810 0.89729 1.01721 1.05563 1.21738 0.92528 1.00692
1.01988 1.20046 0.89559 1.00986 1.06744 1.98327 1.49290 1.69366
1.84854 1.22293 0.89843 0.96151 1.00096 1.44016 1.04859 1.25600
1.33258 1.22403 1.05072 0.86467 0.92852 1.22487 0.99918 0.97055
0.83219 1.22402 0.98492 0.99982 0.97328 1.20445 0.92151 0.85255
0.95823 0.93395 1.42568 1.79066 1.09234 1.05592 1.19562 1.34724
0.93873 0.87675 0.90727 1.25348 1.03589 0.98370 0.98988 1.69800
1.53907 1.12809 1.25450 0.85309 0.77587 0.77579 0.80299 1.22078
1.22909 1.19523 0.92149 0.91546 0.94094 0.89364 0.92828 0.82182
0.76531 0.89840 0.90354 0.85507 0.92525 0.86324 0.91418 0.91049
0.79283 0.94423
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.06 9.05 71.98 0.65 -3.41 16
2 C -0.10 -3.08 2.66 -10.86 -0.03 -3.11 16
3 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16
4 C 0.13 4.26 5.40 86.22 0.47 4.73 16
5 N -0.59 -19.05 2.98 -824.45 -2.46 -21.51 16
6 C 0.58 18.81 7.53 86.45 0.65 19.46 16
7 O -0.58 -20.63 14.80 -4.34 -0.06 -20.69 16
8 C -0.05 -1.49 6.54 40.35 0.26 -1.22 16
9 C -0.14 -3.76 8.54 22.59 0.19 -3.57 16
10 C -0.14 -3.11 6.66 22.04 0.15 -2.97 16
11 Cl -0.05 -0.98 29.30 -2.72 -0.08 -1.06 16
12 C 0.05 0.92 11.35 83.48 0.95 1.87 16
13 N -0.40 -8.35 3.16 -534.16 -1.69 -10.04 16
14 C 0.07 1.05 10.29 127.77 1.31 2.36 16
15 C 0.09 3.04 4.89 86.36 0.42 3.47 16
16 C -0.14 -4.55 5.78 30.67 0.18 -4.37 16
17 C 0.17 6.26 2.53 45.02 0.11 6.37 16
18 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16
19 N -0.72 -33.40 3.64 -322.80 -1.18 -34.58 16
20 C -0.23 -11.78 9.93 84.03 0.83 -10.94 16
21 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16
22 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16
23 N -0.97 -57.61 13.06 21.65 0.28 -57.32 16
24 Si 0.96 45.24 29.55 68.60 2.03 47.27 16
25 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16
26 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16
27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
28 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16
29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
30 H 0.04 1.52 7.54 -2.39 -0.02 1.51 16
31 H 0.09 2.91 7.00 -2.39 -0.02 2.89 16
32 H 0.05 2.07 6.64 -2.39 -0.02 2.06 16
33 H 0.16 4.40 5.68 -2.91 -0.02 4.38 16
34 H 0.22 1.80 8.06 -2.91 -0.02 1.78 16
35 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16
36 H 0.08 1.44 7.24 -2.39 -0.02 1.42 16
37 H 0.13 0.78 8.12 -2.39 -0.02 0.76 16
38 H 0.06 2.19 7.74 -2.39 -0.02 2.17 16
39 H 0.12 3.36 3.66 -2.39 -0.01 3.35 16
40 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16
41 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16
42 H 0.37 18.87 5.93 -92.71 -0.55 18.32 16
43 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16
Total: -1.00 -65.68 355.16 3.95 -61.73
By element:
Atomic # 1 Polarization: 30.48 SS G_CDS: 0.49 Total: 30.97 kcal
Atomic # 6 Polarization: -1.40 SS G_CDS: 6.62 Total: 5.22 kcal
Atomic # 7 Polarization: -118.40 SS G_CDS: -5.04 Total: -123.44 kcal
Atomic # 8 Polarization: -20.63 SS G_CDS: -0.06 Total: -20.69 kcal
Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal
Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal
Total: -65.68 3.95 -61.73 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036102928.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.121 kcal
(2) G-P(sol) polarization free energy of solvation -65.683 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.438 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.731 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.390 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds