Wall clock time and date at job start Tue Mar 31 2020 14:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.58195 * 2 1 4 4 C 1.53192 * 109.58499 * 120.27727 * 2 1 3 5 5 C 1.53044 * 109.31182 * 174.56970 * 4 2 1 6 6 C 1.53047 * 109.53595 * 298.63531 * 5 4 2 7 7 H 1.09001 * 109.49865 * 301.41604 * 6 5 4 8 8 N 1.46495 * 109.49502 * 181.31412 * 6 5 4 9 9 C 1.34774 * 119.99758 * 155.00000 * 8 6 5 10 10 O 1.21701 * 120.00076 * 5.15162 * 9 8 6 11 11 C 1.46677 * 119.99988 * 185.15288 * 9 8 6 12 12 C 1.37882 * 126.22305 * 356.92113 * 11 9 8 13 13 C 1.39888 * 107.09677 * 179.97438 * 12 11 9 14 14 Cl 1.73603 * 126.07581 * 180.02562 * 13 12 11 15 15 C 1.35513 * 107.85124 * 0.02562 * 13 12 11 16 16 N 1.35630 * 108.85071 * 359.76502 * 15 13 12 17 17 C 1.46502 * 125.68042 * 180.26887 * 16 15 13 18 18 C 1.53197 * 109.31070 * 61.36668 * 6 5 4 19 19 N 1.46919 * 109.70684 * 239.64029 * 2 1 3 20 20 C 1.36940 * 120.63283 * 6.51552 * 19 2 1 21 21 H 1.07996 * 119.99820 * 320.79020 * 20 19 2 22 22 C 1.38810 * 120.00200 * 140.78624 * 20 19 2 23 23 N 1.31622 * 120.00164 * 350.88363 * 22 20 19 24 24 Si 1.86801 * 119.99915 * 170.88157 * 22 20 19 25 25 H 1.48503 * 109.47101 * 90.00260 * 24 22 20 26 26 H 1.48505 * 109.47250 * 209.99956 * 24 22 20 27 27 H 1.48496 * 109.47233 * 330.00551 * 24 22 20 28 28 H 1.08994 * 109.47855 * 300.00078 * 1 2 3 29 29 H 1.09002 * 109.46699 * 60.00486 * 1 2 3 30 30 H 1.09004 * 109.46765 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.50041 * 294.52179 * 4 2 1 32 32 H 1.08997 * 109.49673 * 54.61965 * 4 2 1 33 33 H 1.08995 * 109.45820 * 58.65403 * 5 4 2 34 34 H 1.08998 * 109.46017 * 178.62120 * 5 4 2 35 35 H 0.96999 * 120.00384 * 335.00272 * 8 6 5 36 36 H 1.08004 * 126.45445 * 359.93059 * 12 11 9 37 37 H 1.08007 * 125.57668 * 180.02562 * 15 13 12 38 38 H 1.08999 * 109.47323 * 269.99897 * 17 16 15 39 39 H 1.09006 * 109.46576 * 29.99823 * 17 16 15 40 40 H 1.08998 * 109.47377 * 149.99385 * 17 16 15 41 41 H 1.08997 * 109.58488 * 65.14905 * 18 6 5 42 42 H 1.08996 * 109.58329 * 185.43452 * 18 6 5 43 43 H 0.97000 * 120.00133 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8431 1.1731 6 6 3.9604 -1.6607 -0.0597 7 1 3.5038 -2.6487 -0.0016 8 7 5.4181 -1.7972 -0.1119 9 6 5.9745 -2.8392 -0.7608 10 8 5.2717 -3.6145 -1.3823 11 6 7.4269 -3.0389 -0.7181 12 6 8.3454 -2.2118 -0.1070 13 6 9.6082 -2.7786 -0.3099 14 17 11.1192 -2.1376 0.2555 15 6 9.4423 -3.9168 -1.0264 16 7 8.1204 -4.0885 -1.2765 17 6 7.5292 -5.2044 -2.0192 18 6 3.4686 -0.9435 -1.3209 19 7 2.0254 -0.6991 -1.1935 20 6 1.1586 -1.1152 -2.1685 21 1 0.1980 -1.5273 -1.8969 22 6 1.5146 -1.0074 -3.5058 23 7 2.6000 -0.3455 -3.8467 24 14 0.4531 -1.8016 -4.8218 25 1 -0.5789 -0.8349 -5.2755 26 1 1.3040 -2.1942 -5.9739 27 1 -0.2097 -3.0069 -4.2624 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7637 -0.1653 2.1372 32 1 1.6050 -1.7245 1.2922 33 1 4.0044 0.1530 1.1023 34 1 3.9381 -1.3389 2.0704 35 1 5.9828 -1.1378 0.3206 36 1 8.1306 -1.2980 0.4272 37 1 10.2331 -4.5811 -1.3426 38 1 7.4790 -4.9502 -3.0779 39 1 8.1444 -6.0946 -1.8880 40 1 6.5244 -5.3987 -1.6441 41 1 3.9920 0.0065 -1.4286 42 1 3.6600 -1.5672 -2.1940 43 1 2.8490 -0.2705 -4.7812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071665556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:13 Heat of formation + Delta-G solvation = 21.934537 kcal Electronic energy + Delta-G solvation = -25867.406354 eV Core-core repulsion = 22167.694505 eV Total energy + Delta-G solvation = -3699.711849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51783 -39.13591 -37.46936 -36.49262 -34.54184 -32.97339 -32.62615 -30.94661 -29.95734 -29.05337 -26.56838 -25.98415 -24.94101 -22.79619 -22.16186 -20.94456 -20.27193 -19.72992 -19.14670 -17.87565 -16.40777 -15.87052 -15.74105 -15.57258 -14.97983 -14.33991 -14.14125 -13.97200 -13.78223 -13.73240 -13.44849 -13.30407 -13.09154 -12.94564 -12.71782 -12.41387 -12.29567 -11.84129 -11.54515 -11.41612 -11.08583 -10.97384 -10.89622 -10.74540 -10.54828 -10.41646 -10.26028 -9.97550 -9.85630 -9.50097 -9.43422 -8.79061 -8.64764 -8.41917 -8.27846 -6.45165 -5.74551 -3.30218 1.42277 2.01354 2.35542 2.75591 3.39420 3.46614 3.48692 3.53611 3.61340 4.52027 4.68855 4.75216 4.86880 5.10392 5.20190 5.34925 5.37848 5.44659 5.50644 5.56493 5.59636 5.67564 5.83231 5.97970 6.12001 6.27458 6.30886 6.35322 6.42344 6.47251 6.50683 6.65220 6.67349 6.74293 6.89541 6.92616 7.09755 7.17759 7.30667 7.69669 7.84165 7.89057 8.50465 8.58087 9.26546 9.86838 10.48887 11.32896 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.014764 B = 0.003430 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.009606 B = 8161.111205 C = 9296.344491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.120 3.880 7 H 0.082 0.918 8 N -0.705 5.705 9 C 0.583 3.417 10 O -0.536 6.536 11 C -0.022 4.022 12 C -0.136 4.136 13 C -0.121 4.121 14 Cl -0.055 7.055 15 C 0.024 3.976 16 N -0.402 5.402 17 C 0.066 3.934 18 C 0.174 3.826 19 N -0.581 5.581 20 C -0.258 4.258 21 H 0.063 0.937 22 C 0.016 3.984 23 N -0.896 5.896 24 Si 0.899 3.101 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.278 1.278 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.395 0.605 36 H 0.152 0.848 37 H 0.176 0.824 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.020 0.980 42 H 0.082 0.918 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.935 -5.139 9.608 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.015 3.985 7 H 0.100 0.900 8 N -0.355 5.355 9 C 0.369 3.631 10 O -0.414 6.414 11 C -0.137 4.137 12 C -0.162 4.162 13 C -0.154 4.154 14 Cl -0.027 7.027 15 C -0.113 4.113 16 N -0.075 5.075 17 C -0.074 4.074 18 C 0.047 3.953 19 N -0.305 5.305 20 C -0.387 4.387 21 H 0.081 0.919 22 C -0.184 4.184 23 N -0.539 5.539 24 Si 0.729 3.271 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.203 1.203 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.229 0.771 36 H 0.170 0.830 37 H 0.193 0.807 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.038 0.962 42 H 0.100 0.900 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.384 -5.915 8.835 16.322 hybrid contribution 0.205 0.033 -0.591 0.626 sum 12.588 -5.882 8.244 16.156 Atomic orbital electron populations 1.21766 0.95970 1.01304 1.00123 1.20514 0.93080 0.93556 0.87001 0.95755 1.22049 0.94155 1.01314 0.99055 1.21684 0.97502 0.99731 0.96545 1.22061 0.76885 1.00991 0.98595 0.89975 1.45780 1.08791 1.25842 1.55084 1.16838 0.84687 0.81972 0.79611 1.90839 1.63039 1.45683 1.41880 1.20277 0.93220 0.92921 1.07277 1.21179 0.90020 1.00899 1.04101 1.19851 0.87605 0.98810 1.09171 1.98315 1.29880 1.86126 1.88350 1.21653 0.85497 0.99871 1.04262 1.43808 1.05466 1.18702 1.39482 1.22368 1.01441 0.86376 0.97219 1.20986 0.84093 0.96624 0.93646 1.43906 1.02279 1.64780 1.19520 1.18977 0.99559 1.35229 0.84981 0.91933 1.25349 0.97477 0.97737 0.97856 1.69968 1.25479 1.42021 1.16393 0.86364 0.79841 0.79277 0.81655 1.21284 1.21639 1.20291 0.94460 0.91967 0.92937 0.92638 0.92136 0.92106 0.92966 0.77071 0.82991 0.80708 0.90002 0.89832 0.87362 0.96225 0.89969 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.05 37.16 0.30 -2.22 16 2 C 0.16 3.36 3.49 -67.60 -0.24 3.13 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.11 5.37 -26.61 -0.14 -2.25 16 5 C -0.12 -1.83 5.35 -26.68 -0.14 -1.98 16 6 C 0.12 2.26 2.57 -67.81 -0.17 2.09 16 7 H 0.08 1.75 7.66 -51.93 -0.40 1.35 16 8 N -0.71 -11.37 5.06 -54.99 -0.28 -11.65 16 9 C 0.58 10.16 7.74 -12.85 -0.10 10.06 16 10 O -0.54 -11.24 14.42 5.19 0.07 -11.17 16 11 C -0.02 -0.32 6.89 -81.98 -0.56 -0.89 16 12 C -0.14 -1.70 10.35 -39.09 -0.40 -2.11 16 13 C -0.12 -1.43 6.66 -39.94 -0.27 -1.69 16 14 Cl -0.06 -0.58 29.30 -51.86 -1.52 -2.10 16 15 C 0.02 0.26 11.36 -16.85 -0.19 0.07 16 16 N -0.40 -5.07 3.16 -120.19 -0.38 -5.45 16 17 C 0.07 0.71 10.54 59.85 0.63 1.34 16 18 C 0.17 4.14 4.80 -3.71 -0.02 4.12 16 19 N -0.58 -14.35 2.93 -164.78 -0.48 -14.84 16 20 C -0.26 -7.01 8.28 -15.06 -0.12 -7.13 16 21 H 0.06 1.67 6.55 -52.49 -0.34 1.33 16 22 C 0.02 0.45 5.05 -17.43 -0.09 0.36 16 23 N -0.90 -26.43 11.59 55.49 0.64 -25.79 16 24 Si 0.90 22.08 29.56 -169.99 -5.03 17.05 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.28 7.70 -51.93 -0.40 0.88 16 30 H 0.05 1.00 7.40 -51.93 -0.38 0.62 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.40 5.12 7.50 -40.82 -0.31 4.82 16 36 H 0.15 1.59 7.44 -52.48 -0.39 1.20 16 37 H 0.18 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.11 1.39 6.40 -51.93 -0.33 1.06 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 2.32 6.69 -51.93 -0.35 1.97 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -32.21 360.83 -9.32 -41.53 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.26 Total: 4.09 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.52 Total: 2.89 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.50 Total: -57.73 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.52 Total: -2.10 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.21 -9.32 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071665556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.464 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds