Wall clock time and date at job start Tue Mar 31 2020 14:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.58195 * 2 1 4 4 C 1.53192 * 109.58499 * 120.27727 * 2 1 3 5 5 C 1.53044 * 109.31182 * 174.56970 * 4 2 1 6 6 C 1.53047 * 109.53595 * 298.63531 * 5 4 2 7 7 H 1.09001 * 109.49865 * 301.41604 * 6 5 4 8 8 N 1.46495 * 109.49502 * 181.31412 * 6 5 4 9 9 C 1.34774 * 119.99758 * 155.00000 * 8 6 5 10 10 O 1.21701 * 120.00076 * 5.15162 * 9 8 6 11 11 C 1.46677 * 119.99988 * 185.15288 * 9 8 6 12 12 C 1.37882 * 126.22305 * 356.92113 * 11 9 8 13 13 C 1.39888 * 107.09677 * 179.97438 * 12 11 9 14 14 Cl 1.73603 * 126.07581 * 180.02562 * 13 12 11 15 15 C 1.35513 * 107.85124 * 0.02562 * 13 12 11 16 16 N 1.35630 * 108.85071 * 359.76502 * 15 13 12 17 17 C 1.46502 * 125.68042 * 180.26887 * 16 15 13 18 18 C 1.53197 * 109.31070 * 61.36668 * 6 5 4 19 19 N 1.46919 * 109.70684 * 239.64029 * 2 1 3 20 20 C 1.36940 * 120.63283 * 6.51552 * 19 2 1 21 21 H 1.07996 * 119.99820 * 320.79020 * 20 19 2 22 22 C 1.38810 * 120.00200 * 140.78624 * 20 19 2 23 23 N 1.31622 * 120.00164 * 350.88363 * 22 20 19 24 24 Si 1.86801 * 119.99915 * 170.88157 * 22 20 19 25 25 H 1.48503 * 109.47101 * 90.00260 * 24 22 20 26 26 H 1.48505 * 109.47250 * 209.99956 * 24 22 20 27 27 H 1.48496 * 109.47233 * 330.00551 * 24 22 20 28 28 H 1.08994 * 109.47855 * 300.00078 * 1 2 3 29 29 H 1.09002 * 109.46699 * 60.00486 * 1 2 3 30 30 H 1.09004 * 109.46765 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.50041 * 294.52179 * 4 2 1 32 32 H 1.08997 * 109.49673 * 54.61965 * 4 2 1 33 33 H 1.08995 * 109.45820 * 58.65403 * 5 4 2 34 34 H 1.08998 * 109.46017 * 178.62120 * 5 4 2 35 35 H 0.96999 * 120.00384 * 335.00272 * 8 6 5 36 36 H 1.08004 * 126.45445 * 359.93059 * 12 11 9 37 37 H 1.08007 * 125.57668 * 180.02562 * 15 13 12 38 38 H 1.08999 * 109.47323 * 269.99897 * 17 16 15 39 39 H 1.09006 * 109.46576 * 29.99823 * 17 16 15 40 40 H 1.08998 * 109.47377 * 149.99385 * 17 16 15 41 41 H 1.08997 * 109.58488 * 65.14905 * 18 6 5 42 42 H 1.08996 * 109.58329 * 185.43452 * 18 6 5 43 43 H 0.97000 * 120.00133 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8431 1.1731 6 6 3.9604 -1.6607 -0.0597 7 1 3.5038 -2.6487 -0.0016 8 7 5.4181 -1.7972 -0.1119 9 6 5.9745 -2.8392 -0.7608 10 8 5.2717 -3.6145 -1.3823 11 6 7.4269 -3.0389 -0.7181 12 6 8.3454 -2.2118 -0.1070 13 6 9.6082 -2.7786 -0.3099 14 17 11.1192 -2.1376 0.2555 15 6 9.4423 -3.9168 -1.0264 16 7 8.1204 -4.0885 -1.2765 17 6 7.5292 -5.2044 -2.0192 18 6 3.4686 -0.9435 -1.3209 19 7 2.0254 -0.6991 -1.1935 20 6 1.1586 -1.1152 -2.1685 21 1 0.1980 -1.5273 -1.8969 22 6 1.5146 -1.0074 -3.5058 23 7 2.6000 -0.3455 -3.8467 24 14 0.4531 -1.8016 -4.8218 25 1 -0.5789 -0.8349 -5.2755 26 1 1.3040 -2.1942 -5.9739 27 1 -0.2097 -3.0069 -4.2624 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7637 -0.1653 2.1372 32 1 1.6050 -1.7245 1.2922 33 1 4.0044 0.1530 1.1023 34 1 3.9381 -1.3389 2.0704 35 1 5.9828 -1.1378 0.3206 36 1 8.1306 -1.2980 0.4272 37 1 10.2331 -4.5811 -1.3426 38 1 7.4790 -4.9502 -3.0779 39 1 8.1444 -6.0946 -1.8880 40 1 6.5244 -5.3987 -1.6441 41 1 3.9920 0.0065 -1.4286 42 1 3.6600 -1.5672 -2.1940 43 1 2.8490 -0.2705 -4.7812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071665556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:12 Heat of formation + Delta-G solvation = 1.651831 kcal Electronic energy + Delta-G solvation = -25868.285878 eV Core-core repulsion = 22167.694505 eV Total energy + Delta-G solvation = -3700.591373 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.51590 -40.56100 -39.05047 -37.35064 -36.08491 -34.66599 -33.77485 -32.36771 -31.82414 -30.18694 -27.69404 -27.45955 -26.69631 -24.27068 -23.66499 -22.20421 -21.49957 -21.22989 -20.51496 -18.97699 -18.30913 -17.29503 -17.12742 -16.74703 -16.48968 -15.85449 -15.57384 -15.34918 -15.20961 -14.94966 -14.92050 -14.64700 -14.39660 -14.11862 -13.93027 -13.80209 -13.45536 -13.21337 -13.02600 -12.76184 -12.71656 -12.55502 -12.41265 -12.39536 -12.15036 -11.98695 -11.83288 -11.63862 -11.41927 -11.12752 -10.96978 -10.56916 -10.14198 -9.73785 -9.26430 -8.48148 -7.85280 -5.44282 0.34859 1.13124 1.40471 1.42920 1.43629 1.51311 1.72971 2.27145 2.41136 2.50762 3.30939 3.60285 3.77021 3.88531 3.98592 4.01814 4.10723 4.22053 4.27452 4.33620 4.40306 4.53661 4.61363 4.70715 4.73499 4.81243 4.90212 4.91665 5.03417 5.09122 5.20569 5.30379 5.32385 5.37002 5.47113 5.57403 5.60484 5.69419 5.71304 5.77973 6.03404 6.45957 6.56862 7.16902 7.22693 7.87697 8.43070 9.18301 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.014764 B = 0.003430 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.009606 B = 8161.111205 C = 9296.344491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 H 0.019 0.981 4 C -0.117 4.117 5 C -0.108 4.108 6 C 0.136 3.864 7 H 0.055 0.945 8 N -0.696 5.696 9 C 0.579 3.421 10 O -0.584 6.584 11 C -0.061 4.061 12 C -0.121 4.121 13 C -0.139 4.139 14 Cl -0.042 7.042 15 C 0.047 3.953 16 N -0.409 5.409 17 C 0.066 3.934 18 C 0.188 3.812 19 N -0.602 5.602 20 C -0.256 4.256 21 H 0.065 0.935 22 C -0.043 4.043 23 N -0.931 5.931 24 Si 0.957 3.043 25 H -0.277 1.277 26 H -0.298 1.298 27 H -0.270 1.270 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.413 0.587 36 H 0.169 0.831 37 H 0.214 0.786 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.080 0.920 41 H -0.003 1.003 42 H 0.028 0.972 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.204 -5.384 11.967 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 H 0.037 0.963 4 C -0.157 4.157 5 C -0.146 4.146 6 C 0.030 3.970 7 H 0.074 0.926 8 N -0.347 5.347 9 C 0.367 3.633 10 O -0.465 6.465 11 C -0.175 4.175 12 C -0.148 4.148 13 C -0.172 4.172 14 Cl -0.014 7.014 15 C -0.091 4.091 16 N -0.081 5.081 17 C -0.074 4.074 18 C 0.061 3.939 19 N -0.326 5.326 20 C -0.387 4.387 21 H 0.083 0.917 22 C -0.239 4.239 23 N -0.576 5.576 24 Si 0.785 3.215 25 H -0.204 1.204 26 H -0.225 1.225 27 H -0.195 1.195 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.250 0.750 36 H 0.187 0.813 37 H 0.230 0.770 38 H 0.096 0.904 39 H 0.144 0.856 40 H 0.099 0.901 41 H 0.015 0.985 42 H 0.047 0.953 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.649 -6.134 11.249 18.721 hybrid contribution -0.099 0.120 -1.284 1.293 sum 13.550 -6.014 9.966 17.863 Atomic orbital electron populations 1.21699 0.94808 1.01071 1.00866 1.20813 0.94238 0.93289 0.86815 0.96348 1.21949 0.94475 1.00928 0.98304 1.21660 0.97120 1.00021 0.95790 1.21567 0.78284 0.99358 0.97773 0.92630 1.45574 1.07879 1.26223 1.54998 1.17324 0.86047 0.81380 0.78531 1.90812 1.64504 1.47335 1.43879 1.19915 0.91766 0.95215 1.10599 1.21447 0.90050 1.00727 1.02587 1.19970 0.87867 0.99386 1.09966 1.98321 1.28804 1.86031 1.88250 1.22307 0.85245 0.99586 1.01912 1.44023 1.06106 1.18585 1.39404 1.22427 1.00985 0.87482 0.96535 1.20644 0.84204 0.94827 0.94261 1.44205 1.02202 1.65698 1.20510 1.19285 0.99729 1.33899 0.85764 0.91732 1.26071 0.98842 0.98986 0.99977 1.70130 1.27317 1.44181 1.15994 0.85438 0.78335 0.78732 0.78979 1.20373 1.22477 1.19485 0.90381 0.94538 0.93586 0.88593 0.92799 0.90830 0.89397 0.75001 0.81320 0.76980 0.90430 0.85632 0.90132 0.98452 0.95334 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 8.05 71.98 0.58 -4.05 16 2 C 0.15 6.15 3.49 44.98 0.16 6.30 16 3 H 0.02 0.77 8.14 -2.38 -0.02 0.76 16 4 C -0.12 -3.61 5.37 30.67 0.16 -3.44 16 5 C -0.11 -3.14 5.35 30.62 0.16 -2.98 16 6 C 0.14 5.23 2.57 45.07 0.12 5.34 16 7 H 0.06 2.45 7.66 -2.39 -0.02 2.43 16 8 N -0.70 -22.71 5.06 -446.11 -2.26 -24.97 16 9 C 0.58 20.94 7.74 86.45 0.67 21.61 16 10 O -0.58 -26.17 14.42 -4.35 -0.06 -26.24 16 11 C -0.06 -1.77 6.89 40.35 0.28 -1.49 16 12 C -0.12 -2.86 10.35 22.58 0.23 -2.63 16 13 C -0.14 -2.94 6.66 22.04 0.15 -2.79 16 14 Cl -0.04 -0.79 29.30 -2.72 -0.08 -0.86 16 15 C 0.05 0.89 11.36 83.48 0.95 1.84 16 16 N -0.41 -9.89 3.16 -534.16 -1.69 -11.58 16 17 C 0.07 1.38 10.54 127.77 1.35 2.73 16 18 C 0.19 9.41 4.80 86.36 0.41 9.82 16 19 N -0.60 -30.60 2.93 -675.23 -1.98 -32.58 16 20 C -0.26 -14.40 8.28 84.03 0.70 -13.71 16 21 H 0.07 3.54 6.55 -2.91 -0.02 3.52 16 22 C -0.04 -2.49 5.05 84.86 0.43 -2.06 16 23 N -0.93 -57.92 11.59 21.65 0.25 -57.67 16 24 Si 0.96 47.06 29.56 68.60 2.03 49.09 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 27 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 28 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.04 1.48 7.70 -2.39 -0.02 1.46 16 30 H 0.05 1.71 7.40 -2.39 -0.02 1.69 16 31 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.41 10.32 7.50 -92.71 -0.70 9.63 16 36 H 0.17 3.19 7.44 -2.91 -0.02 3.17 16 37 H 0.21 2.25 8.06 -2.91 -0.02 2.22 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.08 2.18 6.40 -2.39 -0.02 2.17 16 41 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.03 1.71 6.69 -2.39 -0.02 1.69 16 43 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -75.86 360.83 2.88 -72.98 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.33 Total: 17.34 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 6.34 Total: 14.50 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -5.68 Total: -126.80 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.06 Total: -26.24 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.86 kcal Total: -75.86 2.88 -72.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071665556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.631 kcal (2) G-P(sol) polarization free energy of solvation -75.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds