Wall clock time and date at job start Tue Mar 31 2020 14:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84892 * 23.79955 * 10 9 7 12 12 C 1.53780 * 113.61668 * 154.99448 * 10 9 7 13 13 C 1.53781 * 87.08232 * 139.97914 * 12 10 9 14 14 H 1.08999 * 113.61318 * 89.19917 * 13 12 10 15 15 C 1.53006 * 113.61628 * 220.02241 * 13 12 10 16 16 N 1.46505 * 109.47014 * 184.99998 * 15 13 12 17 17 C 1.34772 * 119.99764 * 179.97438 * 16 15 13 18 18 O 1.21551 * 120.00062 * 0.02562 * 17 16 15 19 19 C 1.47839 * 119.99902 * 179.97438 * 17 16 15 20 20 C 1.40027 * 120.55927 * 179.97438 * 19 17 16 21 21 C 1.38357 * 118.28755 * 179.97438 * 20 19 17 22 22 C 1.38344 * 119.30385 * 0.02562 * 21 20 19 23 23 C 1.50699 * 119.46002 * 179.97438 * 22 21 20 24 24 F 1.39892 * 109.47425 * 300.00087 * 23 22 21 25 25 F 1.39907 * 109.47256 * 60.00139 * 23 22 21 26 26 N 1.31926 * 121.08088 * 359.97438 * 22 21 20 27 27 C 1.31693 * 121.87976 * 359.76898 * 26 22 21 28 28 C 1.53782 * 113.61256 * 252.49493 * 10 9 7 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.08994 * 113.61573 * 254.52493 * 12 10 9 32 32 H 1.09004 * 113.60919 * 25.43453 * 12 10 9 33 33 H 1.08995 * 109.46598 * 304.99942 * 15 13 12 34 34 H 1.08994 * 109.46744 * 64.99937 * 15 13 12 35 35 H 0.97003 * 119.99866 * 359.97438 * 16 15 13 36 36 H 1.07998 * 120.85398 * 0.02562 * 20 19 17 37 37 H 1.08002 * 120.34588 * 179.97438 * 21 20 19 38 38 H 1.09006 * 109.47341 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.71896 * 180.24572 * 27 26 22 40 40 H 1.08999 * 113.61640 * 334.56560 * 28 10 9 41 41 H 1.08997 * 113.61899 * 105.47187 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0652 -3.5640 0.4046 12 6 1.2597 -4.8290 0.5929 13 6 1.8482 -5.6974 -0.5316 14 1 2.7979 -6.1645 -0.2709 15 6 0.8455 -6.6847 -1.1323 16 7 1.5273 -7.5423 -2.1049 17 6 0.8377 -8.4944 -2.7639 18 8 -0.3501 -8.6412 -2.5516 19 6 1.5256 -9.3594 -3.7457 20 6 0.8206 -10.3526 -4.4366 21 6 1.5110 -11.1349 -5.3453 22 6 2.8626 -10.9136 -5.5400 23 6 3.6181 -11.7640 -6.5284 24 9 3.5405 -13.1067 -6.1435 25 9 3.0567 -11.6105 -7.8007 26 7 3.5010 -9.9702 -4.8746 27 6 2.8872 -9.1967 -4.0032 28 6 1.9999 -4.4015 -1.3458 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 1.5905 -5.1219 1.5892 32 1 0.1794 -4.7004 0.5251 33 1 0.4222 -7.3004 -0.3388 34 1 0.0472 -6.1341 -1.6300 35 1 2.4752 -7.4248 -2.2745 36 1 -0.2349 -10.5034 -4.2652 37 1 1.0001 -11.9109 -5.8962 38 1 4.6624 -11.4524 -6.5525 39 1 3.4432 -8.4324 -3.4807 40 1 1.1221 -4.1561 -1.9434 41 1 2.9284 -4.3494 -1.9144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086103732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:00 Heat of formation + Delta-G solvation = -69.536371 kcal Electronic energy + Delta-G solvation = -25765.240277 eV Core-core repulsion = 21509.765271 eV Total energy + Delta-G solvation = -4255.475006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.59821 -47.58197 -41.21293 -39.64441 -38.56618 -35.08955 -33.78783 -33.39056 -32.70194 -30.18875 -28.38303 -26.76849 -25.25094 -24.48039 -23.87790 -23.28759 -21.38970 -21.11669 -19.32620 -18.65688 -18.24160 -17.91382 -17.83671 -17.29270 -16.87483 -15.87945 -15.71631 -15.57806 -15.12912 -15.03750 -14.65063 -14.40812 -14.22558 -13.94229 -13.82338 -13.77418 -13.65849 -13.49182 -13.27918 -13.03083 -12.09701 -12.00910 -11.88925 -11.66121 -11.06479 -10.83157 -10.72272 -10.60601 -10.41610 -10.32213 -10.07665 -10.03768 -9.97925 -9.94064 -9.30053 -9.15511 -8.91815 -7.08329 -6.15268 -3.15588 -0.17851 0.51974 2.29753 2.64271 2.76271 3.15581 3.48798 3.53472 3.56878 3.67603 3.72671 4.04062 4.11031 4.26951 4.38935 4.41221 4.60709 4.62386 4.78727 4.80870 4.89752 5.05329 5.24987 5.32491 5.38989 5.42571 5.65110 5.67249 5.74647 5.79483 5.85601 6.02411 6.13649 6.18250 6.25017 6.44235 6.64673 6.95340 6.99136 7.12638 7.76627 7.80250 8.70531 9.17186 10.03561 10.18272 11.32834 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.023384 B = 0.001863 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.115596 B =15024.901615 C =15602.147262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.045 4.045 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.337 4.337 8 H 0.066 0.934 9 N -0.724 5.724 10 C 0.172 3.828 11 H 0.077 0.923 12 C -0.143 4.143 13 C -0.128 4.128 14 H 0.091 0.909 15 C 0.131 3.869 16 N -0.715 5.715 17 C 0.558 3.442 18 O -0.530 6.530 19 C -0.161 4.161 20 C -0.016 4.016 21 C -0.137 4.137 22 C 0.066 3.934 23 C 0.324 3.676 24 F -0.191 7.191 25 F -0.191 7.191 26 N -0.459 5.459 27 C 0.137 3.863 28 C -0.162 4.162 29 H 0.255 0.745 30 H 0.368 0.632 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.400 0.600 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.135 0.865 39 H 0.170 0.830 40 H 0.077 0.923 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.422 -26.050 -10.375 29.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.243 4.243 3 Si 0.914 3.086 4 H -0.223 1.223 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.468 4.468 8 H 0.084 0.916 9 N -0.363 5.363 10 C 0.059 3.941 11 H 0.095 0.905 12 C -0.183 4.183 13 C -0.147 4.147 14 H 0.109 0.891 15 C 0.009 3.991 16 N -0.366 5.366 17 C 0.343 3.657 18 O -0.407 6.407 19 C -0.167 4.167 20 C -0.042 4.042 21 C -0.157 4.157 22 C -0.072 4.072 23 C 0.269 3.731 24 F -0.172 7.172 25 F -0.172 7.172 26 N -0.167 5.167 27 C -0.022 4.022 28 C -0.203 4.203 29 H 0.067 0.933 30 H 0.202 0.798 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.236 0.764 36 H 0.175 0.825 37 H 0.168 0.832 38 H 0.152 0.848 39 H 0.187 0.813 40 H 0.096 0.904 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.505 -24.311 -10.365 27.474 hybrid contribution -0.589 -1.880 -0.022 1.971 sum 6.917 -26.192 -10.388 29.013 Atomic orbital electron populations 1.70858 1.06067 1.28500 1.53321 1.25816 0.97063 1.01140 1.00276 0.83193 0.73884 0.75287 0.76265 1.22267 1.22122 1.21358 1.20123 0.92084 0.85878 1.48681 0.91625 1.42420 1.04786 1.00893 1.88240 1.21451 0.95334 0.84542 0.92726 0.90487 1.23466 1.00928 0.97081 0.96851 1.22656 0.98450 0.94359 0.99230 0.89124 1.21534 0.95379 0.91528 0.90681 1.45977 1.13299 1.34845 1.42487 1.17944 0.86651 0.80391 0.80721 1.90816 1.14699 1.69939 1.65235 1.21238 0.95795 0.99360 1.00266 1.21810 1.01459 0.90377 0.90585 1.21941 0.94391 1.00661 0.98745 1.21712 0.92471 0.95701 0.97315 1.20121 0.98748 0.77268 0.76933 1.93044 1.97611 1.35494 1.91101 1.93052 1.87880 1.95406 1.40855 1.67239 1.39347 1.03955 1.06199 1.22986 0.90795 0.95754 0.92670 1.23959 1.01448 0.94866 1.00004 0.93326 0.79812 0.91804 0.90224 0.91257 0.90837 0.76431 0.82483 0.83222 0.84763 0.81318 0.90440 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.94 13.70 55.49 0.76 -28.18 16 2 C -0.05 -1.30 5.50 -17.43 -0.10 -1.40 16 3 Si 1.08 25.66 29.92 -169.99 -5.09 20.58 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.34 -9.30 9.97 -15.06 -0.15 -9.45 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -17.65 5.40 -52.64 -0.28 -17.93 16 10 C 0.17 3.20 4.48 -67.12 -0.30 2.90 16 11 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 12 C -0.14 -2.14 7.39 -25.92 -0.19 -2.33 16 13 C -0.13 -1.54 3.76 -89.80 -0.34 -1.87 16 14 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 15 C 0.13 1.53 5.51 -4.04 -0.02 1.51 16 16 N -0.71 -6.96 5.51 -61.25 -0.34 -7.29 16 17 C 0.56 6.27 7.78 -12.33 -0.10 6.17 16 18 O -0.53 -7.88 16.42 5.32 0.09 -7.79 16 19 C -0.16 -1.45 5.89 -104.82 -0.62 -2.07 16 20 C -0.02 -0.13 9.72 -38.87 -0.38 -0.51 16 21 C -0.14 -1.00 9.60 -39.50 -0.38 -1.38 16 22 C 0.07 0.52 6.28 -82.51 -0.52 0.00 16 23 C 0.32 2.08 5.54 36.01 0.20 2.28 16 24 F -0.19 -1.43 17.25 2.25 0.04 -1.39 16 25 F -0.19 -1.47 17.25 2.25 0.04 -1.43 16 26 N -0.46 -3.86 10.23 -9.14 -0.09 -3.96 16 27 C 0.14 1.05 10.71 -17.13 -0.18 0.87 16 28 C -0.16 -2.51 7.43 -25.91 -0.19 -2.70 16 29 H 0.26 7.71 6.77 -40.82 -0.28 7.44 16 30 H 0.37 9.30 6.75 -40.82 -0.28 9.03 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 35 H 0.40 2.80 6.54 -40.82 -0.27 2.53 16 36 H 0.16 1.19 7.74 -52.49 -0.41 0.78 16 37 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.14 0.56 8.10 -51.93 -0.42 0.14 16 39 H 0.17 0.84 6.42 -52.49 -0.34 0.50 16 40 H 0.08 1.34 7.90 -51.93 -0.41 0.93 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -34.08 359.24 -7.69 -41.77 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.96 Total: 8.20 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -3.26 Total: -7.97 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.04 Total: -57.37 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.09 Total: -7.79 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.82 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.09 Total: 20.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.08 -7.69 -41.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086103732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.770 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds