Wall clock time and date at job start Tue Mar 31 2020 14:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84892 * 23.79955 * 10 9 7 12 12 C 1.53780 * 113.61668 * 154.99448 * 10 9 7 13 13 C 1.53781 * 87.08232 * 139.97914 * 12 10 9 14 14 H 1.08999 * 113.61318 * 89.19917 * 13 12 10 15 15 C 1.53006 * 113.61628 * 220.02241 * 13 12 10 16 16 N 1.46505 * 109.47014 * 184.99998 * 15 13 12 17 17 C 1.34772 * 119.99764 * 179.97438 * 16 15 13 18 18 O 1.21551 * 120.00062 * 0.02562 * 17 16 15 19 19 C 1.47839 * 119.99902 * 179.97438 * 17 16 15 20 20 C 1.40027 * 120.55927 * 179.97438 * 19 17 16 21 21 C 1.38357 * 118.28755 * 179.97438 * 20 19 17 22 22 C 1.38344 * 119.30385 * 0.02562 * 21 20 19 23 23 C 1.50699 * 119.46002 * 179.97438 * 22 21 20 24 24 F 1.39892 * 109.47425 * 300.00087 * 23 22 21 25 25 F 1.39907 * 109.47256 * 60.00139 * 23 22 21 26 26 N 1.31926 * 121.08088 * 359.97438 * 22 21 20 27 27 C 1.31693 * 121.87976 * 359.76898 * 26 22 21 28 28 C 1.53782 * 113.61256 * 252.49493 * 10 9 7 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.08994 * 113.61573 * 254.52493 * 12 10 9 32 32 H 1.09004 * 113.60919 * 25.43453 * 12 10 9 33 33 H 1.08995 * 109.46598 * 304.99942 * 15 13 12 34 34 H 1.08994 * 109.46744 * 64.99937 * 15 13 12 35 35 H 0.97003 * 119.99866 * 359.97438 * 16 15 13 36 36 H 1.07998 * 120.85398 * 0.02562 * 20 19 17 37 37 H 1.08002 * 120.34588 * 179.97438 * 21 20 19 38 38 H 1.09006 * 109.47341 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.71896 * 180.24572 * 27 26 22 40 40 H 1.08999 * 113.61640 * 334.56560 * 28 10 9 41 41 H 1.08997 * 113.61899 * 105.47187 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0652 -3.5640 0.4046 12 6 1.2597 -4.8290 0.5929 13 6 1.8482 -5.6974 -0.5316 14 1 2.7979 -6.1645 -0.2709 15 6 0.8455 -6.6847 -1.1323 16 7 1.5273 -7.5423 -2.1049 17 6 0.8377 -8.4944 -2.7639 18 8 -0.3501 -8.6412 -2.5516 19 6 1.5256 -9.3594 -3.7457 20 6 0.8206 -10.3526 -4.4366 21 6 1.5110 -11.1349 -5.3453 22 6 2.8626 -10.9136 -5.5400 23 6 3.6181 -11.7640 -6.5284 24 9 3.5405 -13.1067 -6.1435 25 9 3.0567 -11.6105 -7.8007 26 7 3.5010 -9.9702 -4.8746 27 6 2.8872 -9.1967 -4.0032 28 6 1.9999 -4.4015 -1.3458 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 1.5905 -5.1219 1.5892 32 1 0.1794 -4.7004 0.5251 33 1 0.4222 -7.3004 -0.3388 34 1 0.0472 -6.1341 -1.6300 35 1 2.4752 -7.4248 -2.2745 36 1 -0.2349 -10.5034 -4.2652 37 1 1.0001 -11.9109 -5.8962 38 1 4.6624 -11.4524 -6.5525 39 1 3.4432 -8.4324 -3.4807 40 1 1.1221 -4.1561 -1.9434 41 1 2.9284 -4.3494 -1.9144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086103732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:00 Heat of formation + Delta-G solvation = -92.643874 kcal Electronic energy + Delta-G solvation = -25766.242293 eV Core-core repulsion = 21509.765271 eV Total energy + Delta-G solvation = -4256.477022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.13307 -48.12467 -41.90398 -40.58655 -39.75032 -36.38546 -35.38173 -34.06302 -33.36447 -31.95212 -29.34419 -27.67513 -26.53583 -25.69024 -25.07833 -24.13682 -22.67190 -21.95468 -20.58984 -19.54612 -19.18779 -18.79900 -18.54898 -18.37067 -17.57897 -16.84264 -16.76874 -16.54090 -16.30211 -15.99008 -15.68006 -15.39777 -15.25822 -15.16072 -14.87234 -14.49186 -14.45207 -14.37812 -14.36485 -13.61304 -13.44642 -13.32278 -13.13251 -12.65414 -12.55261 -12.40758 -12.08373 -11.85813 -11.72600 -11.46442 -11.38398 -11.24093 -11.01565 -10.83972 -10.78210 -10.61937 -10.18903 -9.08336 -8.39003 -5.32543 -0.82348 -0.06766 1.52624 1.58433 1.69130 1.82943 1.89626 2.14198 2.47788 2.72226 3.10007 3.20167 3.37746 3.43135 3.54230 3.59680 3.64899 3.67107 3.77301 3.85517 3.90404 4.08188 4.11158 4.24827 4.31948 4.37900 4.48486 4.63530 4.71571 4.81090 4.89805 4.90131 4.97898 5.12740 5.16889 5.23922 5.33558 5.59672 5.65895 6.32492 6.41200 6.49180 6.98772 7.10250 8.00861 8.13320 9.12769 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.023384 B = 0.001863 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.115596 B =15024.901615 C =15602.147262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.111 4.111 3 Si 1.130 2.870 4 H -0.285 1.285 5 H -0.271 1.271 6 H -0.296 1.296 7 C -0.330 4.330 8 H 0.070 0.930 9 N -0.743 5.743 10 C 0.145 3.855 11 H 0.079 0.921 12 C -0.138 4.138 13 C -0.094 4.094 14 H 0.127 0.873 15 C 0.138 3.862 16 N -0.702 5.702 17 C 0.560 3.440 18 O -0.573 6.573 19 C -0.174 4.174 20 C -0.021 4.021 21 C -0.139 4.139 22 C 0.061 3.939 23 C 0.326 3.674 24 F -0.197 7.197 25 F -0.198 7.198 26 N -0.468 5.468 27 C 0.143 3.857 28 C -0.154 4.154 29 H 0.243 0.757 30 H 0.358 0.642 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.416 0.584 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.197 0.803 40 H 0.055 0.945 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.887 -27.448 -10.733 31.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.301 4.301 3 Si 0.955 3.045 4 H -0.212 1.212 5 H -0.196 1.196 6 H -0.223 1.223 7 C -0.462 4.462 8 H 0.088 0.912 9 N -0.382 5.382 10 C 0.036 3.964 11 H 0.097 0.903 12 C -0.177 4.177 13 C -0.113 4.113 14 H 0.144 0.856 15 C 0.014 3.986 16 N -0.354 5.354 17 C 0.346 3.654 18 O -0.453 6.453 19 C -0.179 4.179 20 C -0.047 4.047 21 C -0.159 4.159 22 C -0.077 4.077 23 C 0.272 3.728 24 F -0.179 7.179 25 F -0.180 7.180 26 N -0.177 5.177 27 C -0.016 4.016 28 C -0.195 4.195 29 H 0.054 0.946 30 H 0.190 0.810 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.255 0.745 36 H 0.175 0.825 37 H 0.185 0.815 38 H 0.178 0.822 39 H 0.213 0.787 40 H 0.073 0.927 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.046 -25.776 -10.732 29.673 hybrid contribution -1.322 -1.555 0.073 2.042 sum 8.725 -27.330 -10.659 30.605 Atomic orbital electron populations 1.70971 1.07278 1.27846 1.56591 1.27229 0.97147 1.04884 1.00884 0.82590 0.73592 0.71512 0.76818 1.21178 1.19591 1.22272 1.20495 0.92474 0.87147 1.46050 0.91189 1.42658 1.04552 1.02118 1.88888 1.21924 0.95540 0.83458 0.95480 0.90330 1.23343 0.99883 0.95809 0.98670 1.22480 0.99643 0.92845 0.96283 0.85559 1.21312 0.94838 0.91490 0.90960 1.45797 1.13991 1.33965 1.41674 1.18237 0.86149 0.80356 0.80626 1.90797 1.16618 1.71229 1.66699 1.21096 0.96474 0.99734 1.00563 1.21935 1.01702 0.90395 0.90673 1.22137 0.94405 1.00826 0.98503 1.22029 0.92824 0.95613 0.97267 1.20332 0.99717 0.76676 0.76111 1.93032 1.97674 1.36025 1.91134 1.93037 1.88146 1.95410 1.41375 1.67312 1.39472 1.04328 1.06584 1.23364 0.90258 0.95818 0.92189 1.23731 1.01189 0.96123 0.98417 0.94649 0.80979 0.90189 0.91448 0.90915 0.93056 0.74521 0.82451 0.81531 0.82200 0.78679 0.92655 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.66 13.70 21.65 0.30 -61.36 16 2 C -0.11 -6.42 5.50 84.86 0.47 -5.95 16 3 Si 1.13 51.71 29.92 68.60 2.05 53.76 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 7 C -0.33 -18.28 9.97 84.03 0.84 -17.44 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.74 -36.66 5.40 -320.46 -1.73 -38.39 16 10 C 0.15 5.28 4.48 45.52 0.20 5.48 16 11 H 0.08 2.82 8.10 -2.39 -0.02 2.80 16 12 C -0.14 -3.89 7.39 31.12 0.23 -3.66 16 13 C -0.09 -1.99 3.76 -10.26 -0.04 -2.03 16 14 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 15 C 0.14 2.97 5.51 86.38 0.48 3.44 16 16 N -0.70 -12.10 5.51 -465.98 -2.57 -14.67 16 17 C 0.56 11.94 7.78 86.79 0.68 12.61 16 18 O -0.57 -17.04 16.42 -3.88 -0.06 -17.10 16 19 C -0.17 -2.86 5.89 -19.99 -0.12 -2.98 16 20 C -0.02 -0.32 9.72 22.73 0.22 -0.10 16 21 C -0.14 -1.82 9.60 22.32 0.21 -1.60 16 22 C 0.06 0.84 6.28 42.57 0.27 1.10 16 23 C 0.33 3.52 5.54 71.24 0.39 3.92 16 24 F -0.20 -2.60 17.25 44.97 0.78 -1.82 16 25 F -0.20 -2.72 17.25 44.97 0.78 -1.94 16 26 N -0.47 -6.76 10.23 -182.83 -1.87 -8.63 16 27 C 0.14 1.84 10.71 85.02 0.91 2.75 16 28 C -0.15 -4.54 7.43 31.12 0.23 -4.31 16 29 H 0.24 15.29 6.77 -92.71 -0.63 14.66 16 30 H 0.36 18.77 6.75 -92.71 -0.63 18.14 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 2.10 8.08 -2.39 -0.02 2.08 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 1.37 7.84 -2.39 -0.02 1.35 16 35 H 0.42 4.37 6.54 -92.71 -0.61 3.76 16 36 H 0.16 2.36 7.74 -2.91 -0.02 2.33 16 37 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.16 0.91 8.10 -2.38 -0.02 0.89 16 39 H 0.20 1.24 6.42 -2.91 -0.02 1.22 16 40 H 0.05 1.90 7.90 -2.39 -0.02 1.88 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -75.31 359.24 2.64 -72.67 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.00 Total: 26.27 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 4.97 Total: -8.78 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -5.87 Total: -123.05 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.06 Total: -17.10 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 1.55 Total: -3.77 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 2.05 Total: 53.76 kcal Total: -75.31 2.64 -72.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086103732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.976 kcal (2) G-P(sol) polarization free energy of solvation -75.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds