Wall clock time and date at job start Tue Mar 31 2020 14:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00019 * 2 1 4 4 H 1.48494 * 109.47102 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46955 * 300.00044 * 3 2 1 6 6 H 1.48507 * 109.47048 * 59.99564 * 3 2 1 7 7 C 1.38813 * 120.00519 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00416 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99468 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99689 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.91324 * 336.25320 * 10 9 7 12 12 C 1.53960 * 113.66583 * 107.43965 * 10 9 7 13 13 C 1.53781 * 87.01996 * 139.93079 * 12 10 9 14 14 H 1.09007 * 113.61463 * 89.23196 * 13 12 10 15 15 C 1.53001 * 113.61715 * 220.04986 * 13 12 10 16 16 N 1.46504 * 109.46790 * 274.13555 * 15 13 12 17 17 C 1.34780 * 119.99735 * 179.97438 * 16 15 13 18 18 O 1.21559 * 119.99894 * 0.02562 * 17 16 15 19 19 C 1.47833 * 120.00179 * 180.02562 * 17 16 15 20 20 C 1.40027 * 120.55724 * 359.97438 * 19 17 16 21 21 C 1.38358 * 118.28953 * 179.97438 * 20 19 17 22 22 C 1.38355 * 119.30078 * 359.97438 * 21 20 19 23 23 N 1.31921 * 121.08304 * 0.02562 * 22 21 20 24 24 C 1.31698 * 121.87460 * 359.97438 * 23 22 21 25 25 C 1.50707 * 119.71411 * 179.97438 * 24 23 22 26 26 F 1.39894 * 109.47162 * 119.99914 * 25 24 23 27 27 F 1.39898 * 109.47191 * 240.00220 * 25 24 23 28 28 C 1.53780 * 87.17475 * 334.64125 * 13 12 10 29 29 H 0.97004 * 120.00377 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00309 * 359.97438 * 9 7 2 31 31 H 1.09001 * 113.61145 * 25.41138 * 12 10 9 32 32 H 1.08997 * 113.66977 * 254.45871 * 12 10 9 33 33 H 1.08995 * 109.47039 * 154.13754 * 15 13 12 34 34 H 1.08996 * 109.46945 * 34.13782 * 15 13 12 35 35 H 0.96995 * 120.00072 * 0.02562 * 16 15 13 36 36 H 1.08001 * 120.85630 * 0.02562 * 20 19 17 37 37 H 1.08001 * 120.34640 * 180.27112 * 21 20 19 38 38 H 1.07998 * 119.45882 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.46941 * 359.97438 * 25 24 23 40 40 H 1.09000 * 113.61490 * 139.93838 * 28 13 12 41 41 H 1.09000 * 113.61219 * 270.76014 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 3.0662 -3.5647 -0.4038 12 6 2.0012 -4.4032 1.3458 13 6 1.8481 -5.6975 0.5296 14 1 2.7980 -6.1646 0.2694 15 6 0.8450 -6.6852 1.1291 16 7 1.5181 -7.5188 2.1282 17 6 0.8264 -8.4663 2.7918 18 8 -0.3559 -8.6294 2.5609 19 6 1.5054 -9.3072 3.8004 20 6 2.8669 -9.1297 4.0752 21 6 3.4548 -9.9421 5.0284 22 6 2.6861 -10.8943 5.6738 23 7 1.4049 -11.0391 5.3943 24 6 0.8003 -10.2902 4.4953 25 6 -0.6656 -10.4977 4.2140 26 9 -1.3649 -9.3178 4.4896 27 9 -0.8385 -10.8389 2.8684 28 6 1.2603 -4.8288 -0.5949 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 1.1238 -4.1581 1.9444 32 1 2.9300 -4.3526 1.9140 33 1 0.4425 -7.3188 0.3389 34 1 0.0322 -6.1348 1.6030 35 1 2.4614 -7.3884 2.3127 36 1 3.4431 -8.3774 3.5571 37 1 4.5017 -9.8309 5.2696 38 1 3.1424 -11.5302 6.4180 39 1 -1.0462 -11.3016 4.8441 40 1 1.5918 -5.1212 -1.5912 41 1 0.1798 -4.7014 -0.5288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086144626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:39 Heat of formation + Delta-G solvation = -61.643776 kcal Electronic energy + Delta-G solvation = -26866.470683 eV Core-core repulsion = 22611.337926 eV Total energy + Delta-G solvation = -4255.132757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.90562 -46.88362 -41.09044 -39.47594 -38.38798 -34.92830 -33.64257 -33.07487 -32.56198 -30.28982 -27.95896 -26.75511 -25.14303 -24.96610 -23.86878 -22.76096 -21.15050 -21.03963 -19.18956 -18.47117 -17.85611 -17.55808 -17.20354 -17.05617 -16.52122 -15.82336 -15.59673 -15.51481 -15.09804 -14.76895 -14.53703 -14.23098 -13.77512 -13.71192 -13.50819 -13.39944 -13.31496 -13.11080 -12.90953 -12.45903 -11.94336 -11.85697 -11.54537 -11.43776 -11.26136 -10.87490 -10.58776 -10.56468 -10.43256 -10.27468 -10.13156 -9.90461 -9.86220 -9.83646 -9.52375 -9.10266 -8.89558 -6.98574 -5.80283 -3.09377 0.01049 0.45675 2.52132 2.86764 3.03189 3.25807 3.40803 3.46120 3.48750 3.86406 4.04620 4.11563 4.19067 4.40567 4.56163 4.66131 4.76364 4.89281 4.93657 4.93908 4.99390 5.18282 5.27356 5.39330 5.44165 5.45891 5.78499 5.79439 5.84221 5.90013 6.06296 6.18289 6.27149 6.31911 6.38448 6.54969 6.78668 7.07872 7.11402 7.28656 7.67240 7.98692 8.38138 9.49278 10.07503 10.41539 11.42106 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.021075 B = 0.002308 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.286591 B =12126.366449 C =12621.272995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.162 4.162 13 C -0.128 4.128 14 H 0.088 0.912 15 C 0.133 3.867 16 N -0.716 5.716 17 C 0.547 3.453 18 O -0.506 6.506 19 C -0.145 4.145 20 C -0.046 4.046 21 C -0.157 4.157 22 C 0.119 3.881 23 N -0.463 5.463 24 C 0.101 3.899 25 C 0.337 3.663 26 F -0.181 7.181 27 F -0.182 7.182 28 C -0.141 4.141 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.397 0.603 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.170 0.830 39 H 0.123 0.877 40 H 0.062 0.938 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.632 -25.429 10.465 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.203 4.203 13 C -0.147 4.147 14 H 0.106 0.894 15 C 0.010 3.990 16 N -0.367 5.367 17 C 0.331 3.669 18 O -0.381 6.381 19 C -0.150 4.150 20 C -0.072 4.072 21 C -0.177 4.177 22 C -0.038 4.038 23 N -0.171 5.171 24 C -0.040 4.040 25 C 0.282 3.718 26 F -0.162 7.162 27 F -0.163 7.163 28 C -0.181 4.181 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.232 0.768 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.187 0.813 39 H 0.140 0.860 40 H 0.081 0.919 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.361 -25.946 10.665 28.765 hybrid contribution 1.261 1.708 -0.289 2.143 sum 7.621 -24.238 10.375 27.445 Atomic orbital electron populations 1.69668 1.05146 1.25678 1.57421 1.24779 0.95523 0.97817 1.02816 0.86125 0.78760 0.84110 0.77221 1.20546 1.21817 1.21843 1.19338 0.91071 0.84227 1.42924 0.91060 1.42423 1.05799 0.99888 1.86937 1.21539 0.95299 0.85065 0.92677 0.90684 1.23996 1.01342 0.94969 1.00026 1.22653 0.98345 0.94391 0.99347 0.89410 1.21508 0.95484 0.91912 0.90051 1.45878 1.13608 1.35965 1.41278 1.17949 0.86875 0.80710 0.81333 1.90913 1.14368 1.68151 1.64694 1.20936 0.95303 0.99000 0.99779 1.21880 0.92996 0.97204 0.95122 1.22290 1.02314 0.96331 0.96770 1.23022 0.88571 0.95323 0.96874 1.67354 1.11824 1.24152 1.13777 1.21917 0.96895 0.92253 0.92902 1.19810 0.85806 0.85531 0.80625 1.93064 1.79373 1.50363 1.93363 1.93050 1.95646 1.92067 1.35561 1.23442 1.01130 0.96907 0.96649 0.93455 0.78029 0.90282 0.92821 0.91363 0.90811 0.76784 0.83495 0.83203 0.81264 0.86014 0.91935 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.61 5.40 -52.55 -0.28 -17.90 16 10 C 0.17 3.14 4.48 -67.02 -0.30 2.84 16 11 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 12 C -0.16 -2.59 7.45 -25.82 -0.19 -2.78 16 13 C -0.13 -1.63 3.75 -89.81 -0.34 -1.97 16 14 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 15 C 0.13 1.71 5.50 -4.04 -0.02 1.69 16 16 N -0.72 -7.92 5.51 -61.25 -0.34 -8.26 16 17 C 0.55 7.14 7.58 -12.33 -0.09 7.05 16 18 O -0.51 -8.41 11.34 5.31 0.06 -8.35 16 19 C -0.14 -1.53 5.85 -104.83 -0.61 -2.15 16 20 C -0.05 -0.31 9.65 -38.87 -0.37 -0.69 16 21 C -0.16 -0.79 10.10 -39.49 -0.40 -1.19 16 22 C 0.12 0.72 11.17 -17.47 -0.20 0.53 16 23 N -0.46 -4.28 10.24 -9.14 -0.09 -4.38 16 24 C 0.10 1.11 6.31 -82.17 -0.52 0.59 16 25 C 0.34 3.96 5.02 36.01 0.18 4.14 16 26 F -0.18 -2.61 15.03 2.25 0.03 -2.58 16 27 F -0.18 -2.54 15.03 2.25 0.03 -2.51 16 28 C -0.14 -2.20 7.40 -25.92 -0.19 -2.39 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.39 10.20 7.92 -40.82 -0.32 9.87 16 31 H 0.08 1.42 7.92 -51.93 -0.41 1.00 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.10 7.87 -51.93 -0.41 0.69 16 35 H 0.40 3.21 6.58 -40.82 -0.27 2.95 16 36 H 0.15 0.62 6.52 -52.49 -0.34 0.28 16 37 H 0.15 0.26 8.06 -52.49 -0.42 -0.16 16 38 H 0.17 0.44 8.06 -52.49 -0.42 0.02 16 39 H 0.12 1.01 8.11 -51.93 -0.42 0.59 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 LS Contribution 352.13 15.07 5.31 5.31 Total: -1.00 -34.72 352.13 -7.98 -42.70 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.10 Total: 7.83 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -3.30 Total: -1.66 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.01 Total: -57.91 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.06 Total: -8.35 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.07 Total: -5.09 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.72 -7.98 -42.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086144626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.945 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds