Wall clock time and date at job start Tue Mar 31 2020 14:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00019 * 2 1 4 4 H 1.48494 * 109.47102 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46955 * 300.00044 * 3 2 1 6 6 H 1.48507 * 109.47048 * 59.99564 * 3 2 1 7 7 C 1.38813 * 120.00519 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00416 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99468 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99689 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.91324 * 336.25320 * 10 9 7 12 12 C 1.53960 * 113.66583 * 107.43965 * 10 9 7 13 13 C 1.53781 * 87.01996 * 139.93079 * 12 10 9 14 14 H 1.09007 * 113.61463 * 89.23196 * 13 12 10 15 15 C 1.53001 * 113.61715 * 220.04986 * 13 12 10 16 16 N 1.46504 * 109.46790 * 274.13555 * 15 13 12 17 17 C 1.34780 * 119.99735 * 179.97438 * 16 15 13 18 18 O 1.21559 * 119.99894 * 0.02562 * 17 16 15 19 19 C 1.47833 * 120.00179 * 180.02562 * 17 16 15 20 20 C 1.40027 * 120.55724 * 359.97438 * 19 17 16 21 21 C 1.38358 * 118.28953 * 179.97438 * 20 19 17 22 22 C 1.38355 * 119.30078 * 359.97438 * 21 20 19 23 23 N 1.31921 * 121.08304 * 0.02562 * 22 21 20 24 24 C 1.31698 * 121.87460 * 359.97438 * 23 22 21 25 25 C 1.50707 * 119.71411 * 179.97438 * 24 23 22 26 26 F 1.39894 * 109.47162 * 119.99914 * 25 24 23 27 27 F 1.39898 * 109.47191 * 240.00220 * 25 24 23 28 28 C 1.53780 * 87.17475 * 334.64125 * 13 12 10 29 29 H 0.97004 * 120.00377 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00309 * 359.97438 * 9 7 2 31 31 H 1.09001 * 113.61145 * 25.41138 * 12 10 9 32 32 H 1.08997 * 113.66977 * 254.45871 * 12 10 9 33 33 H 1.08995 * 109.47039 * 154.13754 * 15 13 12 34 34 H 1.08996 * 109.46945 * 34.13782 * 15 13 12 35 35 H 0.96995 * 120.00072 * 0.02562 * 16 15 13 36 36 H 1.08001 * 120.85630 * 0.02562 * 20 19 17 37 37 H 1.08001 * 120.34640 * 180.27112 * 21 20 19 38 38 H 1.07998 * 119.45882 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.46941 * 359.97438 * 25 24 23 40 40 H 1.09000 * 113.61490 * 139.93838 * 28 13 12 41 41 H 1.09000 * 113.61219 * 270.76014 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 3.0662 -3.5647 -0.4038 12 6 2.0012 -4.4032 1.3458 13 6 1.8481 -5.6975 0.5296 14 1 2.7980 -6.1646 0.2694 15 6 0.8450 -6.6852 1.1291 16 7 1.5181 -7.5188 2.1282 17 6 0.8264 -8.4663 2.7918 18 8 -0.3559 -8.6294 2.5609 19 6 1.5054 -9.3072 3.8004 20 6 2.8669 -9.1297 4.0752 21 6 3.4548 -9.9421 5.0284 22 6 2.6861 -10.8943 5.6738 23 7 1.4049 -11.0391 5.3943 24 6 0.8003 -10.2902 4.4953 25 6 -0.6656 -10.4977 4.2140 26 9 -1.3649 -9.3178 4.4896 27 9 -0.8385 -10.8389 2.8684 28 6 1.2603 -4.8288 -0.5949 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 1.1238 -4.1581 1.9444 32 1 2.9300 -4.3526 1.9140 33 1 0.4425 -7.3188 0.3389 34 1 0.0322 -6.1348 1.6030 35 1 2.4614 -7.3884 2.3127 36 1 3.4431 -8.3774 3.5571 37 1 4.5017 -9.8309 5.2696 38 1 3.1424 -11.5302 6.4180 39 1 -1.0462 -11.3016 4.8441 40 1 1.5918 -5.1212 -1.5912 41 1 0.1798 -4.7014 -0.5288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086144626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:38 Heat of formation + Delta-G solvation = -86.299137 kcal Electronic energy + Delta-G solvation = -26867.539820 eV Core-core repulsion = 22611.337926 eV Total energy + Delta-G solvation = -4256.201894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.86582 -47.87495 -41.78108 -40.46831 -39.60438 -36.16449 -35.17919 -33.91583 -33.22952 -32.13316 -29.07450 -27.66047 -26.46179 -25.99947 -25.36828 -23.51747 -22.44681 -21.97905 -20.54406 -19.33201 -18.99434 -18.61066 -18.33446 -18.16033 -17.42537 -16.89307 -16.61190 -16.42722 -16.12118 -16.06543 -15.68771 -15.25709 -15.17500 -14.85253 -14.65405 -14.35118 -14.22569 -14.10468 -14.08357 -13.42337 -13.24946 -13.23726 -13.04467 -12.92776 -12.67413 -12.36742 -12.15691 -12.05668 -11.61134 -11.55844 -11.23100 -11.14676 -11.06672 -10.83277 -10.68192 -10.45528 -10.10034 -8.97683 -7.94493 -5.22969 -0.62072 -0.06254 1.47410 1.48210 1.58235 1.73450 1.96917 2.34488 2.56770 2.58485 3.21036 3.29823 3.37576 3.49370 3.67248 3.72493 3.74566 3.85977 3.93864 4.04300 4.10002 4.24900 4.25454 4.33532 4.37368 4.42676 4.55119 4.75559 4.79741 4.93301 4.97476 4.99161 5.04484 5.21029 5.30492 5.40082 5.41923 5.52865 5.73386 6.27903 6.39839 6.58358 7.09307 7.33163 8.11829 8.33112 9.29397 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.021075 B = 0.002308 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.286591 B =12126.366449 C =12621.272995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.082 4.082 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.144 3.856 11 H 0.084 0.916 12 C -0.154 4.154 13 C -0.094 4.094 14 H 0.126 0.874 15 C 0.140 3.860 16 N -0.702 5.702 17 C 0.541 3.459 18 O -0.552 6.552 19 C -0.170 4.170 20 C -0.043 4.043 21 C -0.140 4.140 22 C 0.119 3.881 23 N -0.480 5.480 24 C 0.080 3.920 25 C 0.325 3.675 26 F -0.203 7.203 27 F -0.200 7.200 28 C -0.138 4.138 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.415 0.585 36 H 0.176 0.824 37 H 0.194 0.806 38 H 0.207 0.793 39 H 0.150 0.850 40 H 0.079 0.921 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.723 -26.962 11.476 31.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.274 4.274 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.371 4.371 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.034 3.966 11 H 0.102 0.898 12 C -0.195 4.195 13 C -0.113 4.113 14 H 0.144 0.856 15 C 0.016 3.984 16 N -0.355 5.355 17 C 0.327 3.673 18 O -0.431 6.431 19 C -0.176 4.176 20 C -0.069 4.069 21 C -0.159 4.159 22 C -0.038 4.038 23 N -0.189 5.189 24 C -0.060 4.060 25 C 0.270 3.730 26 F -0.184 7.184 27 F -0.182 7.182 28 C -0.178 4.178 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.253 0.747 36 H 0.193 0.807 37 H 0.212 0.788 38 H 0.224 0.776 39 H 0.167 0.833 40 H 0.098 0.902 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.537 -27.527 11.682 31.706 hybrid contribution 0.093 2.050 -0.539 2.122 sum 10.630 -25.477 11.144 29.770 Atomic orbital electron populations 1.69835 1.06799 1.25925 1.59910 1.25617 0.96355 1.01332 1.04065 0.85072 0.78432 0.79807 0.76461 1.18568 1.22268 1.22372 1.19780 0.91646 0.85294 1.40384 0.90090 1.42667 1.05367 1.01343 1.87460 1.21997 0.95672 0.83738 0.95163 0.89828 1.23760 1.01142 0.96003 0.98554 1.22482 0.99436 0.92860 0.96518 0.85577 1.21259 0.95011 0.91848 0.90245 1.45675 1.14302 1.35069 1.40456 1.18447 0.86520 0.80796 0.81494 1.90887 1.16477 1.69533 1.66220 1.20823 0.97087 0.99478 1.00188 1.22265 0.91348 0.97875 0.95403 1.22788 1.04061 0.94317 0.94687 1.23802 0.87495 0.95598 0.96920 1.67366 1.13609 1.24297 1.13663 1.21729 0.96344 0.93547 0.94358 1.20292 0.87234 0.85402 0.80037 1.93003 1.80108 1.51855 1.93424 1.92994 1.95884 1.92129 1.37143 1.23332 0.99878 0.96003 0.98546 0.94153 0.79752 0.92905 0.90908 0.91529 0.93581 0.74720 0.80707 0.78835 0.77594 0.83254 0.90189 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 2 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 3 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 7 C -0.24 -13.11 9.97 84.03 0.84 -12.27 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 9 N -0.73 -36.59 5.40 -320.16 -1.73 -38.32 16 10 C 0.14 5.27 4.48 45.58 0.20 5.48 16 11 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 12 C -0.15 -4.68 7.45 31.18 0.23 -4.45 16 13 C -0.09 -2.17 3.75 -10.27 -0.04 -2.21 16 14 H 0.13 2.09 8.14 -2.38 -0.02 2.07 16 15 C 0.14 3.50 5.50 86.38 0.47 3.97 16 16 N -0.70 -14.50 5.51 -465.97 -2.57 -17.07 16 17 C 0.54 14.12 7.58 86.78 0.66 14.78 16 18 O -0.55 -19.28 11.34 -3.90 -0.04 -19.32 16 19 C -0.17 -3.41 5.85 -20.00 -0.12 -3.53 16 20 C -0.04 -0.44 9.65 22.73 0.22 -0.22 16 21 C -0.14 -0.73 10.10 22.33 0.23 -0.50 16 22 C 0.12 0.99 11.17 84.71 0.95 1.93 16 23 N -0.48 -8.05 10.24 -182.84 -1.87 -9.92 16 24 C 0.08 1.72 6.31 42.89 0.27 1.99 16 25 C 0.32 7.99 5.02 71.24 0.36 8.35 16 26 F -0.20 -6.28 15.03 44.97 0.68 -5.60 16 27 F -0.20 -5.94 15.03 44.97 0.68 -5.26 16 28 C -0.14 -4.14 7.40 31.12 0.23 -3.91 16 29 H 0.25 15.06 8.31 -92.71 -0.77 14.28 16 30 H 0.37 20.37 7.92 -92.71 -0.73 19.64 16 31 H 0.05 1.91 7.92 -2.39 -0.02 1.89 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.42 7.87 -2.39 -0.02 1.41 16 35 H 0.41 5.34 6.58 -92.71 -0.61 4.73 16 36 H 0.18 0.64 6.52 -2.91 -0.02 0.62 16 37 H 0.19 -0.66 8.06 -2.91 -0.02 -0.68 16 38 H 0.21 0.04 8.06 -2.91 -0.02 0.02 16 39 H 0.15 2.59 8.11 -2.39 -0.02 2.57 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 41 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 Total: -1.00 -80.61 352.13 2.16 -78.45 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -0.26 Total: 24.10 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.97 Total: 5.16 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -5.89 Total: -125.55 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.04 Total: -19.32 kcal Atomic # 9 Polarization: -12.22 SS G_CDS: 1.35 Total: -10.87 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -80.61 2.16 -78.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086144626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.845 kcal (2) G-P(sol) polarization free energy of solvation -80.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds