Wall clock time and date at job start Tue Mar 31 2020 14:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38227 * 120.00284 * 2 1 4 4 C 1.38205 * 120.04227 * 180.02562 * 3 2 1 5 5 C 1.38382 * 120.03658 * 0.26756 * 4 3 2 6 6 Cl 1.73597 * 120.00082 * 179.72816 * 5 4 3 7 7 C 1.38297 * 119.99654 * 359.47761 * 5 4 3 8 8 C 1.50705 * 120.01681 * 180.25125 * 7 5 4 9 9 N 1.46900 * 109.47125 * 263.63844 * 8 7 5 10 10 C 1.46900 * 110.99953 * 199.37880 * 9 8 7 11 11 C 1.50705 * 109.47256 * 145.73192 * 10 9 8 12 12 H 1.07998 * 119.99683 * 356.81326 * 11 10 9 13 13 C 1.37878 * 119.99810 * 176.81141 * 11 10 9 14 14 N 1.31512 * 120.00367 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99701 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47266 * 90.00009 * 15 13 11 17 17 H 1.48499 * 109.47027 * 210.00275 * 15 13 11 18 18 H 1.48502 * 109.47141 * 329.99863 * 15 13 11 19 19 C 1.46892 * 111.00050 * 75.42248 * 9 8 7 20 20 C 1.54272 * 110.03335 * 194.06330 * 19 9 8 21 21 C 1.54960 * 104.16073 * 217.13551 * 20 19 9 22 22 C 1.54890 * 102.77609 * 37.89514 * 21 20 19 23 23 C 1.53882 * 110.03296 * 76.85323 * 19 9 8 24 24 C 1.38445 * 120.00074 * 180.02562 * 2 1 3 25 25 F 1.35100 * 120.01740 * 0.02562 * 24 2 1 26 26 H 1.08999 * 109.46881 * 90.00078 * 1 2 3 27 27 H 1.09001 * 109.46654 * 210.00379 * 1 2 3 28 28 H 1.09001 * 109.47015 * 330.00134 * 1 2 3 29 29 H 1.08003 * 119.97517 * 0.02562 * 3 2 1 30 30 H 1.07991 * 119.98110 * 179.97438 * 4 3 2 31 31 H 1.08995 * 109.46933 * 23.64085 * 8 7 5 32 32 H 1.09004 * 109.47035 * 143.63555 * 8 7 5 33 33 H 1.09001 * 109.47056 * 265.73527 * 10 9 8 34 34 H 1.09005 * 109.47352 * 25.73401 * 10 9 8 35 35 H 0.97000 * 120.00459 * 179.97438 * 14 13 11 36 36 H 1.09000 * 110.02157 * 315.46290 * 19 9 8 37 37 H 1.08999 * 110.48642 * 335.78956 * 20 19 9 38 38 H 1.08999 * 110.48135 * 98.43075 * 20 19 9 39 39 H 1.08993 * 110.72351 * 279.57682 * 21 20 19 40 40 H 1.09000 * 110.92179 * 156.29774 * 21 20 19 41 41 H 1.09005 * 110.48359 * 203.39990 * 22 21 20 42 42 H 1.08997 * 110.60158 * 80.81657 * 22 21 20 43 43 H 1.09003 * 110.02640 * 238.57325 * 23 19 9 44 44 H 1.09008 * 110.02839 * 359.94627 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1970 0.0000 4 6 3.5802 1.1980 -0.0005 5 6 4.2737 0.0005 -0.0067 6 17 6.0097 0.0028 -0.0145 7 6 3.5838 -1.1981 -0.0013 8 6 4.3386 -2.5025 -0.0023 9 7 4.4449 -3.0057 -1.3783 10 6 4.7460 -4.4435 -1.3912 11 6 4.0645 -5.0889 -2.5703 12 1 3.4260 -4.5011 -3.2131 13 6 4.2563 -6.4296 -2.8283 14 7 5.0334 -7.1455 -2.0453 15 14 3.4121 -7.2294 -4.2902 16 1 4.2892 -7.1287 -5.4843 17 1 3.1490 -8.6594 -3.9884 18 1 2.1270 -6.5360 -4.5601 19 6 5.4494 -2.2506 -2.1389 20 6 5.3021 -2.5448 -3.6461 21 6 6.7598 -2.5712 -4.1714 22 6 7.5281 -3.2581 -3.0152 23 6 6.8644 -2.7036 -1.7379 24 6 2.1992 -1.1990 -0.0005 25 9 1.5241 -2.3692 -0.0016 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6578 2.1322 0.0004 30 1 4.1192 2.1338 -0.0010 31 1 5.3372 -2.3446 0.4050 32 1 3.8071 -3.2303 0.6108 33 1 5.8234 -4.5883 -1.4702 34 1 4.3848 -4.8987 -0.4690 35 1 5.1681 -8.0888 -2.2265 36 1 5.3328 -1.1828 -1.9536 37 1 4.8233 -3.5116 -3.8011 38 1 4.7338 -1.7537 -4.1353 39 1 7.1297 -1.5588 -4.3334 40 1 6.8331 -3.1587 -5.0866 41 1 8.5837 -2.9875 -3.0449 42 1 7.4113 -4.3405 -3.0668 43 1 7.4344 -1.8554 -1.3588 44 1 6.8055 -3.4831 -0.9782 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138034889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:51 Heat of formation + Delta-G solvation = -25.690007 kcal Electronic energy + Delta-G solvation = -26748.472910 eV Core-core repulsion = 23026.775944 eV Total energy + Delta-G solvation = -3721.696966 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.59213 -39.55306 -38.34755 -36.47185 -34.64319 -32.96498 -32.19449 -30.86414 -28.04345 -27.51864 -27.02590 -26.73393 -24.31187 -22.04498 -21.84276 -20.92343 -19.88371 -18.31228 -17.43331 -16.79380 -16.28545 -15.92712 -15.50437 -15.28705 -14.91639 -14.37021 -14.36090 -13.91438 -13.52479 -13.44213 -13.32008 -13.00955 -12.84985 -12.63753 -12.45906 -12.07807 -11.79208 -11.40701 -11.30279 -11.13737 -11.07985 -11.01111 -10.75001 -10.64839 -10.46392 -10.42039 -10.28184 -10.21276 -10.08354 -9.80277 -9.34455 -9.01408 -8.64473 -8.47327 -8.31398 -7.15792 -5.95359 -3.93305 1.01234 1.16442 2.12165 3.35013 3.41532 3.42454 3.46721 4.37108 4.47417 4.65584 4.70623 4.82108 5.03950 5.15089 5.36517 5.39653 5.42286 5.43859 5.47470 5.52368 5.65779 5.76036 5.90489 5.95991 6.06344 6.10141 6.18970 6.19614 6.25355 6.27534 6.35335 6.37720 6.42638 6.52202 6.64720 6.70291 6.82056 6.96053 6.99730 7.23927 7.45686 7.50182 7.91291 8.20139 8.30713 8.60202 9.11549 9.67323 11.14092 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.005334 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.517412 B = 5248.175007 C = 6686.683698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.123 4.123 5 C -0.015 4.015 6 Cl -0.056 7.056 7 C -0.084 4.084 8 C 0.084 3.916 9 N -0.520 5.520 10 C 0.181 3.819 11 C -0.489 4.489 12 H 0.066 0.934 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.890 3.110 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.089 3.911 20 C -0.131 4.131 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.151 4.151 24 C 0.134 3.866 25 F -0.119 7.119 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.025 0.975 34 H 0.017 0.983 35 H 0.259 0.741 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.140 17.097 4.479 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.122 4.122 3 C -0.110 4.110 4 C -0.141 4.141 5 C -0.043 4.043 6 Cl -0.027 7.027 7 C -0.086 4.086 8 C -0.045 4.045 9 N -0.243 5.243 10 C 0.056 3.944 11 C -0.527 4.527 12 H 0.084 0.916 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.718 3.282 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.020 4.020 20 C -0.169 4.169 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.190 4.190 24 C 0.114 3.886 25 F -0.097 7.097 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.042 0.958 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.411 16.900 4.287 17.602 hybrid contribution 0.511 -0.820 -0.380 1.038 sum -1.900 16.080 3.907 16.657 Atomic orbital electron populations 1.20714 0.89963 1.03199 1.02996 1.20018 0.97245 0.91881 1.03104 1.20725 0.93082 0.97156 1.00038 1.20968 0.94179 0.96699 1.02293 1.20569 0.85018 0.93890 1.04784 1.98365 1.09203 1.98600 1.96500 1.19914 0.92342 0.95998 1.00369 1.21077 0.97905 0.91676 0.93802 1.62332 1.46833 1.06633 1.08467 1.20037 0.96799 0.80106 0.97430 1.21148 1.27429 0.93319 1.10829 0.91630 1.24951 0.95651 0.97316 0.96699 1.69944 1.38275 1.07559 1.38163 0.86619 0.80074 0.78545 0.82953 1.20805 1.21446 1.19840 1.22314 0.88415 0.96747 0.94541 1.22789 0.95530 1.04905 0.93628 1.22408 0.96723 0.98812 0.97807 1.22242 0.97242 1.01209 0.94689 1.22800 0.97644 0.99887 0.98693 1.17110 0.88731 0.81328 1.01472 1.91551 1.79452 1.45473 1.93220 0.90622 0.91003 0.91117 0.84599 0.84746 0.93300 0.89929 0.95788 0.96471 0.93119 0.91563 0.86398 0.93622 0.93220 0.92344 0.93472 0.90746 0.93586 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.83 36.01 0.35 -0.77 16 2 C -0.12 -1.53 5.89 -104.55 -0.62 -2.14 16 3 C -0.09 -0.97 9.70 -39.60 -0.38 -1.36 16 4 C -0.12 -1.40 9.83 -39.54 -0.39 -1.79 16 5 C -0.02 -0.22 5.59 -39.51 -0.22 -0.44 16 6 Cl -0.06 -0.77 23.62 -51.86 -1.23 -1.99 16 7 C -0.08 -1.37 5.04 -104.52 -0.53 -1.90 16 8 C 0.08 1.56 4.49 -4.97 -0.02 1.54 16 9 N -0.52 -11.04 4.27 -228.17 -0.97 -12.02 16 10 C 0.18 4.53 4.35 -4.97 -0.02 4.50 16 11 C -0.49 -13.29 7.25 -34.44 -0.25 -13.54 16 12 H 0.07 1.81 6.86 -52.49 -0.36 1.45 16 13 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 14 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 15 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.09 1.71 2.39 -66.59 -0.16 1.55 16 20 C -0.13 -2.59 6.36 -25.03 -0.16 -2.74 16 21 C -0.12 -2.09 6.91 -24.70 -0.17 -2.26 16 22 C -0.12 -2.12 6.67 -25.07 -0.17 -2.29 16 23 C -0.15 -2.80 4.76 -25.61 -0.12 -2.93 16 24 C 0.13 2.13 7.18 -39.42 -0.28 1.85 16 25 F -0.12 -2.15 15.81 2.25 0.04 -2.11 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.75 7.64 -51.93 -0.40 0.36 16 28 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 30 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.05 0.88 5.83 -51.93 -0.30 0.57 16 32 H 0.08 1.62 7.21 -51.93 -0.37 1.24 16 33 H 0.02 0.64 4.65 -51.93 -0.24 0.40 16 34 H 0.02 0.47 7.35 -51.93 -0.38 0.09 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.07 1.20 4.77 -51.93 -0.25 0.96 16 37 H 0.12 2.72 4.34 -51.93 -0.23 2.50 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.56 7.84 -51.93 -0.41 1.15 16 43 H 0.05 0.77 7.13 -51.93 -0.37 0.40 16 44 H 0.07 1.50 5.58 -51.92 -0.29 1.21 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -28.96 351.98 -10.49 -39.45 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.11 Total: 1.50 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -3.23 Total: -21.29 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.24 Total: -37.46 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.23 Total: -1.99 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.96 -10.49 -39.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138034889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.763 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds