Wall clock time and date at job start Tue Mar 31 2020 14:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38227 * 120.00284 * 2 1 4 4 C 1.38205 * 120.04227 * 180.02562 * 3 2 1 5 5 C 1.38382 * 120.03658 * 0.26756 * 4 3 2 6 6 Cl 1.73597 * 120.00082 * 179.72816 * 5 4 3 7 7 C 1.38297 * 119.99654 * 359.47761 * 5 4 3 8 8 C 1.50705 * 120.01681 * 180.25125 * 7 5 4 9 9 N 1.46900 * 109.47125 * 263.63844 * 8 7 5 10 10 C 1.46900 * 110.99953 * 199.37880 * 9 8 7 11 11 C 1.50705 * 109.47256 * 145.73192 * 10 9 8 12 12 H 1.07998 * 119.99683 * 356.81326 * 11 10 9 13 13 C 1.37878 * 119.99810 * 176.81141 * 11 10 9 14 14 N 1.31512 * 120.00367 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99701 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47266 * 90.00009 * 15 13 11 17 17 H 1.48499 * 109.47027 * 210.00275 * 15 13 11 18 18 H 1.48502 * 109.47141 * 329.99863 * 15 13 11 19 19 C 1.46892 * 111.00050 * 75.42248 * 9 8 7 20 20 C 1.54272 * 110.03335 * 194.06330 * 19 9 8 21 21 C 1.54960 * 104.16073 * 217.13551 * 20 19 9 22 22 C 1.54890 * 102.77609 * 37.89514 * 21 20 19 23 23 C 1.53882 * 110.03296 * 76.85323 * 19 9 8 24 24 C 1.38445 * 120.00074 * 180.02562 * 2 1 3 25 25 F 1.35100 * 120.01740 * 0.02562 * 24 2 1 26 26 H 1.08999 * 109.46881 * 90.00078 * 1 2 3 27 27 H 1.09001 * 109.46654 * 210.00379 * 1 2 3 28 28 H 1.09001 * 109.47015 * 330.00134 * 1 2 3 29 29 H 1.08003 * 119.97517 * 0.02562 * 3 2 1 30 30 H 1.07991 * 119.98110 * 179.97438 * 4 3 2 31 31 H 1.08995 * 109.46933 * 23.64085 * 8 7 5 32 32 H 1.09004 * 109.47035 * 143.63555 * 8 7 5 33 33 H 1.09001 * 109.47056 * 265.73527 * 10 9 8 34 34 H 1.09005 * 109.47352 * 25.73401 * 10 9 8 35 35 H 0.97000 * 120.00459 * 179.97438 * 14 13 11 36 36 H 1.09000 * 110.02157 * 315.46290 * 19 9 8 37 37 H 1.08999 * 110.48642 * 335.78956 * 20 19 9 38 38 H 1.08999 * 110.48135 * 98.43075 * 20 19 9 39 39 H 1.08993 * 110.72351 * 279.57682 * 21 20 19 40 40 H 1.09000 * 110.92179 * 156.29774 * 21 20 19 41 41 H 1.09005 * 110.48359 * 203.39990 * 22 21 20 42 42 H 1.08997 * 110.60158 * 80.81657 * 22 21 20 43 43 H 1.09003 * 110.02640 * 238.57325 * 23 19 9 44 44 H 1.09008 * 110.02839 * 359.94627 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1970 0.0000 4 6 3.5802 1.1980 -0.0005 5 6 4.2737 0.0005 -0.0067 6 17 6.0097 0.0028 -0.0145 7 6 3.5838 -1.1981 -0.0013 8 6 4.3386 -2.5025 -0.0023 9 7 4.4449 -3.0057 -1.3783 10 6 4.7460 -4.4435 -1.3912 11 6 4.0645 -5.0889 -2.5703 12 1 3.4260 -4.5011 -3.2131 13 6 4.2563 -6.4296 -2.8283 14 7 5.0334 -7.1455 -2.0453 15 14 3.4121 -7.2294 -4.2902 16 1 4.2892 -7.1287 -5.4843 17 1 3.1490 -8.6594 -3.9884 18 1 2.1270 -6.5360 -4.5601 19 6 5.4494 -2.2506 -2.1389 20 6 5.3021 -2.5448 -3.6461 21 6 6.7598 -2.5712 -4.1714 22 6 7.5281 -3.2581 -3.0152 23 6 6.8644 -2.7036 -1.7379 24 6 2.1992 -1.1990 -0.0005 25 9 1.5241 -2.3692 -0.0016 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6578 2.1322 0.0004 30 1 4.1192 2.1338 -0.0010 31 1 5.3372 -2.3446 0.4050 32 1 3.8071 -3.2303 0.6108 33 1 5.8234 -4.5883 -1.4702 34 1 4.3848 -4.8987 -0.4690 35 1 5.1681 -8.0888 -2.2265 36 1 5.3328 -1.1828 -1.9536 37 1 4.8233 -3.5116 -3.8011 38 1 4.7338 -1.7537 -4.1353 39 1 7.1297 -1.5588 -4.3334 40 1 6.8331 -3.1587 -5.0866 41 1 8.5837 -2.9875 -3.0449 42 1 7.4113 -4.3405 -3.0668 43 1 7.4344 -1.8554 -1.3588 44 1 6.8055 -3.4831 -0.9782 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138034889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:50 Heat of formation + Delta-G solvation = -40.436001 kcal Electronic energy + Delta-G solvation = -26749.112345 eV Core-core repulsion = 23026.775944 eV Total energy + Delta-G solvation = -3722.336400 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.86318 -40.81373 -39.73731 -37.53449 -36.14400 -34.83211 -33.48982 -32.07304 -29.62013 -29.37999 -28.38302 -27.77894 -25.95853 -23.72080 -23.09572 -22.12518 -21.35115 -19.91418 -18.58718 -18.40157 -17.98147 -17.42575 -16.88345 -16.56156 -16.37007 -16.16118 -15.57656 -15.37247 -14.76080 -14.64461 -14.54897 -14.31964 -14.19846 -13.89967 -13.74278 -13.59071 -13.06748 -13.03247 -12.83487 -12.69687 -12.51073 -12.33385 -12.26675 -12.24534 -12.10588 -11.91255 -11.77055 -11.75865 -11.63535 -11.32329 -11.25572 -10.81533 -10.48285 -9.77058 -9.49743 -8.89888 -8.10774 -6.16170 -0.00965 0.10883 1.05432 1.39628 1.40448 1.51393 2.38112 2.45330 3.18483 3.31305 3.34976 3.58922 3.74098 3.84464 3.89135 3.94905 4.17471 4.20201 4.29097 4.48844 4.59231 4.64543 4.66504 4.70732 4.77039 4.78679 4.84093 4.91792 4.99310 5.03049 5.03637 5.09696 5.15173 5.18326 5.20792 5.26980 5.31262 5.32337 5.48438 5.56486 5.71674 5.80627 5.84650 6.18523 6.53479 6.66318 6.94800 7.48369 8.97654 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.005334 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.517412 B = 5248.175007 C = 6686.683698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.118 4.118 3 C -0.074 4.074 4 C -0.110 4.110 5 C -0.025 4.025 6 Cl -0.057 7.057 7 C -0.108 4.108 8 C 0.090 3.910 9 N -0.527 5.527 10 C 0.199 3.801 11 C -0.492 4.492 12 H 0.058 0.942 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.953 3.047 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.270 1.270 19 C 0.091 3.909 20 C -0.136 4.136 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.144 4.144 24 C 0.098 3.902 25 F -0.144 7.144 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.183 0.817 30 H 0.169 0.831 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.010 0.990 34 H -0.019 1.019 35 H 0.260 0.740 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.036 0.964 43 H 0.069 0.931 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.564 20.927 3.486 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.119 4.119 3 C -0.092 4.092 4 C -0.128 4.128 5 C -0.052 4.052 6 Cl -0.028 7.028 7 C -0.110 4.110 8 C -0.038 4.038 9 N -0.250 5.250 10 C 0.073 3.927 11 C -0.530 4.530 12 H 0.076 0.924 13 C -0.193 4.193 14 N -0.575 5.575 15 Si 0.779 3.221 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.194 1.194 19 C -0.017 4.017 20 C -0.174 4.174 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.183 4.183 24 C 0.078 3.922 25 F -0.123 7.123 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.123 0.877 29 H 0.200 0.800 30 H 0.186 0.814 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.028 0.972 34 H -0.001 1.001 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.087 0.913 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.837 20.750 3.294 21.200 hybrid contribution 0.617 -1.894 -0.004 1.991 sum -2.220 18.856 3.290 19.270 Atomic orbital electron populations 1.20803 0.88146 1.04294 1.03618 1.20396 0.98675 0.91182 1.01631 1.21273 0.92855 0.97955 0.97111 1.21412 0.94729 0.96726 0.99937 1.20711 0.85040 0.94056 1.05433 1.98359 1.09325 1.98570 1.96517 1.19701 0.92650 0.95342 1.03305 1.20924 0.98200 0.92767 0.91943 1.62240 1.47721 1.04623 1.10452 1.19657 0.95383 0.82667 0.94988 1.21351 1.27005 0.93617 1.11047 0.92374 1.25725 0.96331 0.97908 0.99340 1.70069 1.39737 1.07786 1.39907 0.85619 0.79148 0.77450 0.79880 1.19820 1.21129 1.19426 1.22380 0.88138 0.97190 0.94022 1.22746 0.97158 1.03233 0.94276 1.22383 0.94726 1.00468 0.97215 1.22209 0.99146 0.98951 0.95012 1.22708 0.97727 0.99727 0.98161 1.17564 0.88936 0.81837 1.03873 1.91479 1.79881 1.47167 1.93763 0.90111 0.92299 0.87684 0.79972 0.81373 0.92991 0.92551 0.97246 1.00054 0.93098 0.89803 0.90133 0.92245 0.90067 0.92058 0.90664 0.94528 0.91274 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 9.83 71.24 0.70 -1.26 16 2 C -0.12 -2.70 5.89 -19.82 -0.12 -2.82 16 3 C -0.07 -1.23 9.70 22.26 0.22 -1.01 16 4 C -0.11 -2.06 9.83 22.30 0.22 -1.84 16 5 C -0.03 -0.67 5.59 22.32 0.12 -0.54 16 6 Cl -0.06 -1.46 23.62 -2.72 -0.06 -1.52 16 7 C -0.11 -3.56 5.04 -19.80 -0.10 -3.66 16 8 C 0.09 3.56 4.49 85.56 0.38 3.94 16 9 N -0.53 -23.57 4.27 -875.79 -3.74 -27.31 16 10 C 0.20 10.68 4.35 85.56 0.37 11.05 16 11 C -0.49 -28.10 7.25 25.60 0.19 -27.92 16 12 H 0.06 3.35 6.86 -2.91 -0.02 3.33 16 13 C 0.00 0.24 5.46 84.66 0.46 0.71 16 14 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 15 Si 0.95 45.56 29.54 68.60 2.03 47.59 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 17 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 19 C 0.09 3.53 2.39 45.65 0.11 3.64 16 20 C -0.14 -5.35 6.36 31.70 0.20 -5.15 16 21 C -0.11 -3.67 6.91 31.91 0.22 -3.45 16 22 C -0.12 -4.19 6.67 31.67 0.21 -3.98 16 23 C -0.14 -5.39 4.76 31.32 0.15 -5.24 16 24 C 0.10 3.15 7.18 22.37 0.16 3.32 16 25 F -0.14 -5.56 15.81 44.97 0.71 -4.85 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.19 7.64 -2.39 -0.02 1.17 16 28 H 0.10 1.11 8.09 -2.39 -0.02 1.09 16 29 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 30 H 0.17 2.07 8.06 -2.92 -0.02 2.05 16 31 H 0.05 1.97 5.83 -2.39 -0.01 1.96 16 32 H 0.06 2.45 7.21 -2.38 -0.02 2.44 16 33 H 0.01 0.56 4.65 -2.39 -0.01 0.55 16 34 H -0.02 -1.11 7.35 -2.38 -0.02 -1.13 16 35 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.08 2.95 4.77 -2.39 -0.01 2.94 16 37 H 0.08 3.82 4.34 -2.39 -0.01 3.81 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.04 1.59 7.84 -2.39 -0.02 1.57 16 43 H 0.07 2.23 7.13 -2.39 -0.02 2.21 16 44 H 0.04 1.90 5.58 -2.38 -0.01 1.89 16 Total: -1.00 -67.60 351.98 3.74 -63.87 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.02 Total: 12.94 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 3.50 Total: -34.22 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -3.46 Total: -83.79 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.71 Total: -4.85 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.06 Total: -1.52 kcal Total: -67.60 3.74 -63.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138034889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.430 kcal (2) G-P(sol) polarization free energy of solvation -67.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds