Wall clock time and date at job start Tue Mar 31 2020 14:00:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86798 * 119.99890 * 2 1
4 4 H 1.48499 * 109.47262 * 269.99826 * 3 2 1
5 5 H 1.48494 * 109.47039 * 30.00680 * 3 2 1
6 6 H 1.48499 * 109.46833 * 150.00237 * 3 2 1
7 7 C 1.38815 * 119.99839 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99392 * 203.12687 * 7 2 1
9 9 N 1.36934 * 120.00174 * 23.12839 * 7 2 1
10 10 C 1.46508 * 119.99649 * 213.92504 * 9 7 2
11 11 C 1.50702 * 109.46908 * 276.07268 * 10 9 7
12 12 C 1.35026 * 125.67403 * 95.00593 * 11 10 9
13 13 N 1.37008 * 107.16596 * 179.97438 * 12 11 10
14 14 C 1.37109 * 106.98446 * 359.97438 * 13 12 11
15 15 C 1.40882 * 119.65292 * 180.02562 * 14 13 12
16 16 C 1.36100 * 119.38381 * 0.02562 * 15 14 13
17 17 C 1.40299 * 119.71488 * 359.97438 * 16 15 14
18 18 C 1.35376 * 120.26304 * 0.02562 * 17 16 15
19 19 F 1.35104 * 119.72422 * 179.97438 * 18 17 16
20 20 N 1.32575 * 108.01830 * 359.77030 * 14 13 12
21 21 C 1.46498 * 120.00151 * 33.92061 * 9 7 2
22 22 C 1.50704 * 109.46799 * 90.00316 * 21 9 7
23 23 C 1.38231 * 119.99948 * 90.00003 * 22 21 9
24 24 C 1.38238 * 120.00259 * 179.97438 * 23 22 21
25 25 C 1.38237 * 119.99410 * 0.06637 * 24 23 22
26 26 C 1.38235 * 120.00469 * 359.91405 * 25 24 23
27 27 C 1.38230 * 119.99806 * 269.98003 * 22 21 9
28 28 H 0.96995 * 120.00030 * 359.97438 * 1 2 3
29 29 H 1.08994 * 109.47274 * 36.07567 * 10 9 7
30 30 H 1.09001 * 109.46915 * 156.07179 * 10 9 7
31 31 H 1.07993 * 126.41732 * 359.97438 * 12 11 10
32 32 H 1.08003 * 120.30318 * 179.97438 * 15 14 13
33 33 H 1.07998 * 120.14078 * 179.97438 * 16 15 14
34 34 H 1.08001 * 119.86929 * 180.02562 * 17 16 15
35 35 H 1.08992 * 109.47000 * 330.00308 * 21 9 7
36 36 H 1.09005 * 109.47109 * 209.99803 * 21 9 7
37 37 H 1.08007 * 120.00351 * 359.70106 * 23 22 21
38 38 H 1.08002 * 120.00648 * 179.97438 * 24 23 22
39 39 H 1.08004 * 119.99864 * 179.97438 * 25 24 23
40 40 H 1.07994 * 120.00208 * 180.02562 * 26 25 24
41 41 H 1.07998 * 120.00367 * 359.97438 * 27 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 -1.4000
5 1 1.4477 2.6526 0.7002
6 1 3.5477 1.4401 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0252 -1.2399 0.3668
9 7 1.4081 -2.3402 -0.4668
10 6 1.7203 -3.6360 0.1414
11 6 2.9764 -4.1922 -0.4782
12 6 4.2252 -4.0575 0.0173
13 7 5.0731 -4.7061 -0.8415
14 6 4.3022 -5.2249 -1.8497
15 6 4.9128 -5.9537 -2.8894
16 6 6.2619 -6.1325 -2.8767
17 6 7.0255 -5.5901 -1.8321
18 6 6.4254 -4.8920 -0.8395
19 9 7.1712 -4.3749 0.1614
20 7 3.0388 -4.9060 -1.6056
21 6 0.4518 -2.2620 -1.5738
22 6 1.1841 -2.4157 -2.8820
23 6 1.3632 -3.6719 -3.4303
24 6 2.0344 -3.8129 -4.6306
25 6 2.5277 -2.6977 -5.2817
26 6 2.3482 -1.4414 -4.7336
27 6 1.6762 -1.3005 -3.5337
28 1 -0.4850 0.8400 0.0004
29 1 1.8701 -3.5075 1.2134
30 1 0.8942 -4.3262 -0.0298
31 1 4.5036 -3.5361 0.9211
32 1 4.3156 -6.3673 -3.6886
33 1 6.7426 -6.6894 -3.6673
34 1 8.0963 -5.7301 -1.8197
35 1 -0.0523 -1.2959 -1.5509
36 1 -0.2852 -3.0590 -1.4742
37 1 0.9826 -4.5438 -2.9189
38 1 2.1748 -4.7944 -5.0589
39 1 3.0525 -2.8078 -6.2192
40 1 2.7332 -0.5702 -5.2425
41 1 1.5356 -0.3189 -3.1057
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001139574750.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:00:46
Heat of formation + Delta-G solvation = 106.587990 kcal
Electronic energy + Delta-G solvation = -27733.318521 eV
Core-core repulsion = 23916.250066 eV
Total energy + Delta-G solvation = -3817.068455 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 325.129 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-49.38005 -42.40491 -38.39116 -37.25833 -35.46574 -33.33752 -31.71986 -31.05299
-29.99759 -29.68575 -28.47497 -26.22633 -25.49700 -23.18074 -22.80845 -22.01561
-21.63252 -20.25897 -19.81365 -18.31180 -17.45373 -16.71228 -16.67534 -16.17847
-15.84797 -15.29688 -15.04438 -14.63181 -14.42519 -14.30781 -14.10320 -13.73583
-13.46856 -13.35312 -12.99961 -12.57900 -12.41702 -12.15623 -12.02494 -11.76440
-11.43641 -11.35993 -10.95138 -10.89641 -10.75507 -10.52437 -10.47296 -10.16337
-10.02693 -9.82474 -9.59789 -8.66624 -8.41509 -8.02173 -7.77993 -7.56449
-6.73714 -5.86657 -3.40053 0.66609 1.36281 2.24734 2.29402 2.38440
3.10256 3.32538 3.40783 3.42561 3.70001 3.99560 4.38838 4.44380
4.59066 4.68916 4.83228 5.02208 5.26106 5.49839 5.62328 5.66411
5.70176 5.71741 5.75420 5.80854 5.86624 6.04652 6.09247 6.17873
6.37601 6.44763 6.47005 6.56006 6.63904 6.68013 6.92197 6.97258
7.04364 7.18337 7.29660 7.37223 7.53253 7.75792 7.80568 7.93100
8.25723 8.42778 9.09542 9.72157 10.27849 11.13655
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.011316 B = 0.005562 C = 0.004549
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2473.752907 B = 5032.781770 C = 6153.377853
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.881 5.881
2 C 0.016 3.984
3 Si 0.891 3.109
4 H -0.285 1.285
5 H -0.290 1.290
6 H -0.278 1.278
7 C -0.255 4.255
8 H 0.060 0.940
9 N -0.561 5.561
10 C 0.214 3.786
11 C 0.080 3.920
12 C -0.090 4.090
13 N -0.389 5.389
14 C 0.230 3.770
15 C -0.074 4.074
16 C -0.101 4.101
17 C -0.174 4.174
18 C 0.266 3.734
19 F -0.115 7.115
20 N -0.457 5.457
21 C 0.171 3.829
22 C -0.078 4.078
23 C -0.080 4.080
24 C -0.130 4.130
25 C -0.144 4.144
26 C -0.139 4.139
27 C -0.100 4.100
28 H 0.256 0.744
29 H 0.068 0.932
30 H 0.060 0.940
31 H 0.178 0.822
32 H 0.151 0.849
33 H 0.146 0.854
34 H 0.155 0.845
35 H 0.108 0.892
36 H 0.035 0.965
37 H 0.117 0.883
38 H 0.103 0.897
39 H 0.102 0.898
40 H 0.104 0.896
41 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.626 -11.529 -5.819 16.107
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.185 4.185
3 Si 0.721 3.279
4 H -0.212 1.212
5 H -0.216 1.216
6 H -0.203 1.203
7 C -0.384 4.384
8 H 0.077 0.923
9 N -0.278 5.278
10 C 0.085 3.915
11 C -0.054 4.054
12 C -0.219 4.219
13 N -0.069 5.069
14 C -0.012 4.012
15 C -0.095 4.095
16 C -0.124 4.124
17 C -0.197 4.197
18 C 0.145 3.855
19 F -0.094 7.094
20 N -0.178 5.178
21 C 0.046 3.954
22 C -0.081 4.081
23 C -0.099 4.099
24 C -0.149 4.149
25 C -0.162 4.162
26 C -0.157 4.157
27 C -0.119 4.119
28 H 0.066 0.934
29 H 0.086 0.914
30 H 0.078 0.922
31 H 0.195 0.805
32 H 0.169 0.831
33 H 0.163 0.837
34 H 0.173 0.827
35 H 0.126 0.874
36 H 0.053 0.947
37 H 0.135 0.865
38 H 0.122 0.878
39 H 0.120 0.880
40 H 0.122 0.878
41 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges 8.776 -11.497 -6.097 15.696
hybrid contribution 1.831 1.463 0.580 2.415
sum 10.607 -10.033 -5.517 15.608
Atomic orbital electron populations
1.69976 1.05429 1.25884 1.51028 1.24984 0.94903 0.98401 1.00178
0.86473 0.79593 0.83911 0.77962 1.21228 1.21613 1.20346 1.18979
0.95021 0.86040 1.38377 0.92272 1.43700 1.49808 1.01027 1.33303
1.19359 0.89231 0.87844 0.95018 1.22637 0.96573 0.94706 0.91531
1.22650 0.89673 1.08904 1.00720 1.43387 1.04700 1.37696 1.21162
1.21027 0.86839 1.01822 0.91555 1.20268 0.94486 0.98127 0.96587
1.20693 0.92897 1.00547 0.98310 1.20433 1.01641 1.03045 0.94627
1.17340 0.79079 0.99962 0.89146 1.91623 1.73408 1.85215 1.59122
1.70808 1.13829 1.17060 1.16064 1.20170 0.90054 1.03544 0.81634
1.21119 0.97847 0.92252 0.96888 1.20995 0.97776 0.96908 0.94225
1.20864 1.00195 0.97196 0.96595 1.20829 1.02349 0.93195 0.99842
1.20971 1.01122 0.96646 0.97010 1.21053 0.97592 0.99082 0.94173
0.93353 0.91406 0.92187 0.80461 0.83115 0.83665 0.82744 0.87440
0.94694 0.86511 0.87842 0.87955 0.87814 0.86902
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -24.14 11.32 55.49 0.63 -23.51 16
2 C 0.02 0.42 4.95 -17.43 -0.09 0.33 16
3 Si 0.89 21.24 29.61 -169.99 -5.03 16.21 16
4 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16
5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
7 C -0.25 -6.64 9.47 -15.06 -0.14 -6.78 16
8 H 0.06 1.57 7.93 -52.48 -0.42 1.16 16
9 N -0.56 -13.33 2.43 -175.98 -0.43 -13.75 16
10 C 0.21 4.38 6.25 -5.19 -0.03 4.35 16
11 C 0.08 1.55 6.59 -82.97 -0.55 1.01 16
12 C -0.09 -1.66 11.61 -16.38 -0.19 -1.85 16
13 N -0.39 -6.55 2.95 -63.03 -0.19 -6.73 16
14 C 0.23 3.85 7.81 -156.02 -1.22 2.63 16
15 C -0.07 -0.94 10.10 -39.35 -0.40 -1.33 16
16 C -0.10 -1.00 10.06 -39.58 -0.40 -1.40 16
17 C -0.17 -1.87 9.95 -39.83 -0.40 -2.27 16
18 C 0.27 3.76 8.24 -16.49 -0.14 3.62 16
19 F -0.11 -1.61 17.20 2.25 0.04 -1.57 16
20 N -0.46 -8.58 8.51 -9.01 -0.08 -8.66 16
21 C 0.17 3.98 5.46 -5.19 -0.03 3.95 16
22 C -0.08 -1.69 5.46 -104.63 -0.57 -2.26 16
23 C -0.08 -1.55 7.56 -39.58 -0.30 -1.85 16
24 C -0.13 -2.27 10.05 -39.58 -0.40 -2.66 16
25 C -0.14 -2.49 10.05 -39.58 -0.40 -2.89 16
26 C -0.14 -2.65 10.05 -39.58 -0.40 -3.05 16
27 C -0.10 -2.17 9.70 -39.58 -0.38 -2.55 16
28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16
29 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16
30 H 0.06 1.16 7.83 -51.93 -0.41 0.76 16
31 H 0.18 3.02 8.06 -52.49 -0.42 2.60 16
32 H 0.15 1.59 8.06 -52.48 -0.42 1.17 16
33 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16
34 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16
35 H 0.11 2.80 5.26 -51.93 -0.27 2.52 16
36 H 0.03 0.77 7.80 -51.93 -0.40 0.36 16
37 H 0.12 2.23 7.50 -52.48 -0.39 1.84 16
38 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16
39 H 0.10 1.49 8.06 -52.48 -0.42 1.07 16
40 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16
41 H 0.11 2.62 8.06 -52.49 -0.42 2.19 16
LS Contribution 353.87 15.07 5.33 5.33
Total: -1.00 -29.57 353.87 -10.58 -40.15
By element:
Atomic # 1 Polarization: 10.37 SS G_CDS: -4.83 Total: 5.54 kcal
Atomic # 6 Polarization: -6.98 SS G_CDS: -6.02 Total: -13.00 kcal
Atomic # 7 Polarization: -52.60 SS G_CDS: -0.06 Total: -52.66 kcal
Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal
Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -29.57 -10.58 -40.15 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001139574750.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.740 kcal
(2) G-P(sol) polarization free energy of solvation -29.574 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.166 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal
(6) G-S(sol) free energy of system = (1) + (5) 106.588 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds