Wall clock time and date at job start Tue Mar 31 2020 14:00:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86798 * 119.99890 * 2 1
4 4 H 1.48499 * 109.47262 * 269.99826 * 3 2 1
5 5 H 1.48494 * 109.47039 * 30.00680 * 3 2 1
6 6 H 1.48499 * 109.46833 * 150.00237 * 3 2 1
7 7 C 1.38815 * 119.99839 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99392 * 203.12687 * 7 2 1
9 9 N 1.36934 * 120.00174 * 23.12839 * 7 2 1
10 10 C 1.46508 * 119.99649 * 213.92504 * 9 7 2
11 11 C 1.50702 * 109.46908 * 276.07268 * 10 9 7
12 12 C 1.35026 * 125.67403 * 95.00593 * 11 10 9
13 13 N 1.37008 * 107.16596 * 179.97438 * 12 11 10
14 14 C 1.37109 * 106.98446 * 359.97438 * 13 12 11
15 15 C 1.40882 * 119.65292 * 180.02562 * 14 13 12
16 16 C 1.36100 * 119.38381 * 0.02562 * 15 14 13
17 17 C 1.40299 * 119.71488 * 359.97438 * 16 15 14
18 18 C 1.35376 * 120.26304 * 0.02562 * 17 16 15
19 19 F 1.35104 * 119.72422 * 179.97438 * 18 17 16
20 20 N 1.32575 * 108.01830 * 359.77030 * 14 13 12
21 21 C 1.46498 * 120.00151 * 33.92061 * 9 7 2
22 22 C 1.50704 * 109.46799 * 90.00316 * 21 9 7
23 23 C 1.38231 * 119.99948 * 90.00003 * 22 21 9
24 24 C 1.38238 * 120.00259 * 179.97438 * 23 22 21
25 25 C 1.38237 * 119.99410 * 0.06637 * 24 23 22
26 26 C 1.38235 * 120.00469 * 359.91405 * 25 24 23
27 27 C 1.38230 * 119.99806 * 269.98003 * 22 21 9
28 28 H 0.96995 * 120.00030 * 359.97438 * 1 2 3
29 29 H 1.08994 * 109.47274 * 36.07567 * 10 9 7
30 30 H 1.09001 * 109.46915 * 156.07179 * 10 9 7
31 31 H 1.07993 * 126.41732 * 359.97438 * 12 11 10
32 32 H 1.08003 * 120.30318 * 179.97438 * 15 14 13
33 33 H 1.07998 * 120.14078 * 179.97438 * 16 15 14
34 34 H 1.08001 * 119.86929 * 180.02562 * 17 16 15
35 35 H 1.08992 * 109.47000 * 330.00308 * 21 9 7
36 36 H 1.09005 * 109.47109 * 209.99803 * 21 9 7
37 37 H 1.08007 * 120.00351 * 359.70106 * 23 22 21
38 38 H 1.08002 * 120.00648 * 179.97438 * 24 23 22
39 39 H 1.08004 * 119.99864 * 179.97438 * 25 24 23
40 40 H 1.07994 * 120.00208 * 180.02562 * 26 25 24
41 41 H 1.07998 * 120.00367 * 359.97438 * 27 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 -1.4000
5 1 1.4477 2.6526 0.7002
6 1 3.5477 1.4401 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0252 -1.2399 0.3668
9 7 1.4081 -2.3402 -0.4668
10 6 1.7203 -3.6360 0.1414
11 6 2.9764 -4.1922 -0.4782
12 6 4.2252 -4.0575 0.0173
13 7 5.0731 -4.7061 -0.8415
14 6 4.3022 -5.2249 -1.8497
15 6 4.9128 -5.9537 -2.8894
16 6 6.2619 -6.1325 -2.8767
17 6 7.0255 -5.5901 -1.8321
18 6 6.4254 -4.8920 -0.8395
19 9 7.1712 -4.3749 0.1614
20 7 3.0388 -4.9060 -1.6056
21 6 0.4518 -2.2620 -1.5738
22 6 1.1841 -2.4157 -2.8820
23 6 1.3632 -3.6719 -3.4303
24 6 2.0344 -3.8129 -4.6306
25 6 2.5277 -2.6977 -5.2817
26 6 2.3482 -1.4414 -4.7336
27 6 1.6762 -1.3005 -3.5337
28 1 -0.4850 0.8400 0.0004
29 1 1.8701 -3.5075 1.2134
30 1 0.8942 -4.3262 -0.0298
31 1 4.5036 -3.5361 0.9211
32 1 4.3156 -6.3673 -3.6886
33 1 6.7426 -6.6894 -3.6673
34 1 8.0963 -5.7301 -1.8197
35 1 -0.0523 -1.2959 -1.5509
36 1 -0.2852 -3.0590 -1.4742
37 1 0.9826 -4.5438 -2.9189
38 1 2.1748 -4.7944 -5.0589
39 1 3.0525 -2.8078 -6.2192
40 1 2.7332 -0.5702 -5.2425
41 1 1.5356 -0.3189 -3.1057
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001139574750.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:00:45
Heat of formation + Delta-G solvation = 93.992791 kcal
Electronic energy + Delta-G solvation = -27733.864690 eV
Core-core repulsion = 23916.250066 eV
Total energy + Delta-G solvation = -3817.614624 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 325.129 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-50.40462 -43.61251 -39.92995 -38.41620 -37.14117 -34.49873 -33.58517 -32.55120
-31.49516 -31.00358 -29.69363 -27.78977 -27.31271 -24.45926 -23.90734 -23.55991
-23.13107 -21.78061 -21.32777 -19.48537 -18.70943 -18.32559 -17.80851 -17.37288
-17.22880 -16.85876 -16.31823 -15.98402 -15.81567 -15.75936 -15.63095 -15.22921
-15.03807 -14.89259 -14.45606 -14.05855 -13.61023 -13.44629 -13.34829 -13.11976
-13.02771 -12.88977 -12.71372 -12.40500 -12.29084 -12.14707 -11.98185 -11.90870
-11.69976 -11.54544 -10.98034 -10.59980 -9.71535 -9.51750 -9.30475 -8.74162
-8.67023 -7.86910 -5.43547 -0.33395 0.30136 0.75072 0.78979 1.27909
1.37981 1.42018 1.48115 1.84195 2.45472 2.57639 2.96875 3.11627
3.24574 3.31414 3.53376 3.86753 3.97533 4.13555 4.21391 4.29124
4.36177 4.37877 4.41057 4.54155 4.60371 4.73679 4.86005 4.91630
4.95657 5.01389 5.03916 5.07760 5.21518 5.40491 5.41174 5.56730
5.61147 5.67624 5.70441 5.81035 5.87929 6.01464 6.15531 6.38454
6.47555 6.95611 7.11590 7.79333 8.32233 9.09847
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.011316 B = 0.005562 C = 0.004549
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2473.752907 B = 5032.781770 C = 6153.377853
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.907 5.907
2 C -0.024 4.024
3 Si 0.940 3.060
4 H -0.290 1.290
5 H -0.288 1.288
6 H -0.275 1.275
7 C -0.253 4.253
8 H 0.048 0.952
9 N -0.573 5.573
10 C 0.217 3.783
11 C 0.064 3.936
12 C -0.116 4.116
13 N -0.396 5.396
14 C 0.225 3.775
15 C -0.093 4.093
16 C -0.069 4.069
17 C -0.144 4.144
18 C 0.225 3.775
19 F -0.122 7.122
20 N -0.485 5.485
21 C 0.178 3.822
22 C -0.096 4.096
23 C -0.079 4.079
24 C -0.121 4.121
25 C -0.133 4.133
26 C -0.144 4.144
27 C -0.128 4.128
28 H 0.253 0.747
29 H 0.063 0.937
30 H 0.063 0.937
31 H 0.174 0.826
32 H 0.176 0.824
33 H 0.200 0.800
34 H 0.197 0.803
35 H 0.076 0.924
36 H 0.034 0.966
37 H 0.115 0.885
38 H 0.141 0.859
39 H 0.143 0.857
40 H 0.123 0.877
41 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.984 -14.097 -9.112 21.221
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.551 5.551
2 C -0.222 4.222
3 Si 0.769 3.231
4 H -0.217 1.217
5 H -0.214 1.214
6 H -0.200 1.200
7 C -0.383 4.383
8 H 0.065 0.935
9 N -0.291 5.291
10 C 0.090 3.910
11 C -0.070 4.070
12 C -0.245 4.245
13 N -0.075 5.075
14 C -0.018 4.018
15 C -0.113 4.113
16 C -0.092 4.092
17 C -0.166 4.166
18 C 0.105 3.895
19 F -0.101 7.101
20 N -0.205 5.205
21 C 0.052 3.948
22 C -0.099 4.099
23 C -0.098 4.098
24 C -0.139 4.139
25 C -0.151 4.151
26 C -0.162 4.162
27 C -0.147 4.147
28 H 0.063 0.937
29 H 0.081 0.919
30 H 0.081 0.919
31 H 0.192 0.808
32 H 0.193 0.807
33 H 0.217 0.783
34 H 0.214 0.786
35 H 0.094 0.906
36 H 0.053 0.947
37 H 0.133 0.867
38 H 0.159 0.841
39 H 0.161 0.839
40 H 0.141 0.859
41 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 12.163 -14.087 -9.382 20.842
hybrid contribution 0.978 2.055 1.476 2.713
sum 13.141 -12.031 -7.906 19.492
Atomic orbital electron populations
1.70078 1.06394 1.26002 1.52650 1.25489 0.95442 1.00525 1.00749
0.85690 0.78708 0.81209 0.77453 1.21691 1.21428 1.19969 1.19025
0.94487 0.87216 1.37607 0.93468 1.43779 1.49796 1.01550 1.33960
1.19290 0.90335 0.86626 0.94787 1.22129 0.96071 0.96156 0.92655
1.22517 0.90065 1.10383 1.01561 1.43428 1.05818 1.37484 1.20802
1.21764 0.86427 1.01463 0.92169 1.20748 0.96024 0.98341 0.96236
1.21373 0.91665 0.97970 0.98203 1.21175 1.03715 0.99251 0.92504
1.17993 0.78247 1.02460 0.90798 1.91603 1.73221 1.85615 1.59654
1.70684 1.15480 1.18295 1.16056 1.19933 0.90188 1.01627 0.83015
1.20907 0.98956 0.93538 0.96457 1.20969 0.98134 0.95544 0.95153
1.21243 0.98279 0.99099 0.95246 1.21253 1.01116 0.91950 1.00787
1.21211 1.00458 0.98631 0.95931 1.20954 0.99974 0.97728 0.96065
0.93747 0.91877 0.91860 0.80849 0.80709 0.78324 0.78611 0.90628
0.94743 0.86695 0.84121 0.83885 0.85942 0.90056
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -52.58 11.32 21.65 0.25 -52.34 16
2 C -0.02 -1.35 4.95 84.86 0.42 -0.93 16
3 Si 0.94 45.57 29.61 68.60 2.03 47.61 16
4 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16
5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16
6 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16
7 C -0.25 -13.96 9.47 84.03 0.80 -13.17 16
8 H 0.05 2.67 7.93 -2.91 -0.02 2.65 16
9 N -0.57 -28.89 2.43 -710.67 -1.73 -30.62 16
10 C 0.22 9.49 6.25 85.63 0.54 10.02 16
11 C 0.06 2.59 6.59 41.55 0.27 2.87 16
12 C -0.12 -4.43 11.61 83.14 0.96 -3.46 16
13 N -0.40 -13.07 2.95 -353.32 -1.04 -14.12 16
14 C 0.22 7.14 7.81 134.08 1.05 8.18 16
15 C -0.09 -1.92 10.10 22.42 0.23 -1.70 16
16 C -0.07 -0.92 10.06 22.27 0.22 -0.69 16
17 C -0.14 -2.33 9.95 22.11 0.22 -2.11 16
18 C 0.23 5.88 8.24 83.31 0.69 6.56 16
19 F -0.12 -3.30 17.20 44.97 0.77 -2.52 16
20 N -0.48 -18.15 8.51 -182.43 -1.55 -19.70 16
21 C 0.18 8.80 5.46 85.63 0.47 9.27 16
22 C -0.10 -4.29 5.46 -19.87 -0.11 -4.40 16
23 C -0.08 -3.01 7.56 22.27 0.17 -2.84 16
24 C -0.12 -3.79 10.05 22.27 0.22 -3.56 16
25 C -0.13 -4.10 10.05 22.27 0.22 -3.87 16
26 C -0.14 -5.28 10.05 22.27 0.22 -5.06 16
27 C -0.13 -5.73 9.70 22.27 0.22 -5.52 16
28 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16
29 H 0.06 2.71 8.09 -2.39 -0.02 2.69 16
30 H 0.06 2.63 7.83 -2.39 -0.02 2.61 16
31 H 0.17 6.42 8.06 -2.91 -0.02 6.40 16
32 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16
33 H 0.20 0.66 8.06 -2.91 -0.02 0.63 16
34 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16
35 H 0.08 4.25 5.26 -2.39 -0.01 4.24 16
36 H 0.03 1.63 7.80 -2.38 -0.02 1.61 16
37 H 0.12 4.38 7.50 -2.91 -0.02 4.36 16
38 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16
39 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16
40 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16
41 H 0.08 4.05 8.06 -2.91 -0.02 4.03 16
Total: -1.00 -70.01 353.87 6.58 -63.43
By element:
Atomic # 1 Polarization: 17.62 SS G_CDS: 1.05 Total: 18.66 kcal
Atomic # 6 Polarization: -17.21 SS G_CDS: 6.81 Total: -10.40 kcal
Atomic # 7 Polarization: -112.70 SS G_CDS: -4.08 Total: -116.77 kcal
Atomic # 9 Polarization: -3.30 SS G_CDS: 0.77 Total: -2.52 kcal
Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.61 kcal
Total: -70.01 6.58 -63.43 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001139574750.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 157.420 kcal
(2) G-P(sol) polarization free energy of solvation -70.011 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.409 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.584 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.427 kcal
(6) G-S(sol) free energy of system = (1) + (5) 93.993 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds