Wall clock time and date at job start Tue Mar 31 2020 14:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46871 * 2 1 4 4 C 1.53005 * 109.47122 * 184.92666 * 3 2 1 5 5 N 1.46499 * 109.47325 * 175.06862 * 4 3 2 6 6 C 1.36830 * 119.99989 * 94.58134 * 5 4 3 7 7 H 1.08000 * 120.00096 * 234.17960 * 6 5 4 8 8 C 1.38897 * 119.99969 * 54.17676 * 6 5 4 9 9 N 1.31500 * 120.00117 * 192.59568 * 8 6 5 10 10 Si 1.86797 * 119.99973 * 12.59220 * 8 6 5 11 11 H 1.48500 * 109.47066 * 94.19828 * 10 8 6 12 12 H 1.48498 * 109.47264 * 214.19830 * 10 8 6 13 13 H 1.48506 * 109.47365 * 334.20108 * 10 8 6 14 14 C 1.38389 * 119.99852 * 274.58262 * 5 4 3 15 15 N 1.32679 * 119.56260 * 6.98914 * 14 5 4 16 16 C 1.31548 * 121.79464 * 179.70896 * 15 14 5 17 17 C 1.39661 * 120.67793 * 0.56638 * 16 15 14 18 18 C 1.47540 * 120.47076 * 179.74605 * 17 16 15 19 19 O 1.21599 * 119.99919 * 325.20190 * 18 17 16 20 20 N 1.34777 * 120.00263 * 145.19919 * 18 17 16 21 21 C 1.46492 * 120.00375 * 185.16956 * 20 18 17 22 22 C 1.46504 * 119.99495 * 5.16509 * 20 18 17 23 23 C 1.40333 * 119.05639 * 359.72300 * 17 16 15 24 24 C 1.38003 * 118.36816 * 0.02562 * 23 17 16 25 25 Cl 1.73600 * 120.38828 * 179.97438 * 24 23 17 26 26 H 1.09003 * 109.46976 * 299.99810 * 1 2 3 27 27 H 1.08996 * 109.47944 * 59.99742 * 1 2 3 28 28 H 1.09000 * 109.47171 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46976 * 240.00190 * 2 1 3 30 30 H 1.08997 * 109.47207 * 120.00178 * 2 1 3 31 31 H 1.08995 * 109.47442 * 64.92956 * 3 2 1 32 32 H 1.09004 * 109.47413 * 304.92053 * 3 2 1 33 33 H 1.09001 * 109.46861 * 295.07386 * 4 3 2 34 34 H 1.09007 * 109.46737 * 55.06691 * 4 3 2 35 35 H 0.97001 * 120.00343 * 179.97438 * 9 8 6 36 36 H 1.08001 * 119.66366 * 180.27026 * 16 15 14 37 37 H 1.09003 * 109.47366 * 359.97438 * 21 20 18 38 38 H 1.09005 * 109.47745 * 119.99443 * 21 20 18 39 39 H 1.09000 * 109.47470 * 240.00136 * 21 20 18 40 40 H 1.08995 * 109.46832 * 88.04989 * 22 20 18 41 41 H 1.09004 * 109.46759 * 208.04972 * 22 20 18 42 42 H 1.08999 * 109.47249 * 328.04715 * 22 20 18 43 43 H 1.08002 * 120.81823 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5649 1.4444 -0.1239 5 7 4.0436 2.8239 -0.2423 6 6 4.4517 3.5045 0.8723 7 1 4.0181 4.4653 1.1073 8 6 5.4236 2.9597 1.7017 9 7 5.6406 3.4795 2.8899 10 14 6.4223 1.4886 1.1292 11 1 7.6901 1.9595 0.5159 12 1 6.7286 0.6159 2.2909 13 1 5.6422 0.7210 0.1254 14 6 4.0830 3.4386 -1.4816 15 7 3.5574 2.8247 -2.5338 16 6 3.5657 3.3708 -3.7305 17 6 4.1452 4.6246 -3.9376 18 6 4.1569 5.2304 -5.2828 19 8 4.2777 4.5253 -6.2661 20 7 4.0336 6.5653 -5.4219 21 6 3.9313 7.1563 -6.7584 22 6 4.0018 7.4253 -4.2362 23 6 4.7157 5.3001 -2.8479 24 6 4.6807 4.6932 -1.6090 25 17 5.3715 5.4816 -0.2251 26 1 -0.3633 0.5138 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.7505 1.9302 0.9308 32 1 1.6064 1.9812 -0.8426 33 1 4.0019 0.9828 0.7616 34 1 3.8581 0.8806 -1.0096 35 1 6.3191 3.0988 3.4693 36 1 3.1241 2.8422 -4.5624 37 1 3.9734 6.3669 -7.5089 38 1 2.9864 7.6924 -6.8474 39 1 4.7582 7.8492 -6.9136 40 1 5.0195 7.7009 -3.9600 41 1 3.4284 8.3260 -4.4560 42 1 3.5338 6.8890 -3.4108 43 1 5.1711 6.2711 -2.9756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:02 Heat of formation + Delta-G solvation = 13.283668 kcal Electronic energy + Delta-G solvation = -26025.155056 eV Core-core repulsion = 22325.068077 eV Total energy + Delta-G solvation = -3700.086979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.65246 -40.33982 -38.24671 -37.06974 -36.59206 -35.60950 -34.15951 -33.23320 -31.47555 -29.76367 -28.90127 -27.56882 -26.26429 -25.14283 -24.01837 -22.80735 -22.04426 -20.84864 -19.61183 -18.35354 -18.17236 -17.73506 -17.09460 -16.67789 -16.36939 -16.20239 -15.79891 -15.72653 -15.14371 -14.87101 -14.72297 -14.46671 -14.43552 -14.09751 -13.81637 -13.54813 -13.43837 -13.39016 -13.15552 -13.06544 -12.98052 -12.74170 -12.52363 -12.28469 -12.17071 -11.91615 -11.70925 -11.43587 -11.23297 -11.18948 -10.69627 -10.64278 -10.27723 -10.11701 -9.66602 -8.53146 -8.23100 -6.01572 0.05791 0.35251 1.23559 1.34735 1.38730 1.61463 1.83438 2.11851 2.22160 2.47157 2.81938 3.05443 3.64160 3.72262 3.88635 4.03816 4.10792 4.19572 4.31381 4.32320 4.43920 4.46813 4.51593 4.58946 4.69623 4.78164 4.83030 4.88362 4.91493 4.96075 4.98293 5.00982 5.02296 5.13050 5.31393 5.41813 5.46323 5.52841 5.61054 5.69153 6.18461 6.30427 6.58377 6.89042 7.14656 7.16239 7.60322 8.68632 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.004889 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.409471 B = 5726.324329 C = 7152.742665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C -0.114 4.114 4 C 0.117 3.883 5 N -0.443 5.443 6 C -0.300 4.300 7 H 0.091 0.909 8 C 0.046 3.954 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.289 1.289 12 H -0.278 1.278 13 H -0.233 1.233 14 C 0.391 3.609 15 N -0.560 5.560 16 C 0.212 3.788 17 C -0.291 4.291 18 C 0.578 3.422 19 O -0.584 6.584 20 N -0.618 5.618 21 C 0.079 3.921 22 C 0.065 3.935 23 C 0.004 3.996 24 C -0.177 4.177 25 Cl -0.042 7.042 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.276 0.724 36 H 0.170 0.830 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 4.208 -10.833 12.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C -0.153 4.153 4 C -0.005 4.005 5 N -0.135 5.135 6 C -0.429 4.429 7 H 0.108 0.892 8 C -0.159 4.159 9 N -0.532 5.532 10 Si 0.718 3.282 11 H -0.216 1.216 12 H -0.204 1.204 13 H -0.156 1.156 14 C 0.151 3.849 15 N -0.280 5.280 16 C 0.047 3.953 17 C -0.302 4.302 18 C 0.369 3.631 19 O -0.466 6.466 20 N -0.350 5.350 21 C -0.063 4.063 22 C -0.077 4.077 23 C -0.022 4.022 24 C -0.212 4.212 25 Cl -0.013 7.013 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.187 0.813 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.090 0.910 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.582 2.994 -10.548 12.304 hybrid contribution 1.294 0.392 0.329 1.392 sum -4.287 3.386 -10.220 11.588 Atomic orbital electron populations 1.21703 0.94608 1.02178 1.01640 1.21442 0.96899 0.95119 1.02092 1.21773 0.94440 0.97979 1.01121 1.21955 0.95123 0.82894 1.00566 1.42697 1.56497 1.12386 1.01896 1.18995 1.20369 1.05525 0.97981 0.89163 1.25766 0.96335 0.98959 0.94815 1.69750 1.32933 1.42432 1.08123 0.86703 0.80247 0.81670 0.79586 1.21612 1.20386 1.15570 1.19036 0.89584 0.89609 0.86653 1.67468 1.25479 1.36055 0.99011 1.22693 0.89859 0.89727 0.93004 1.20124 1.16246 1.00034 0.93797 1.18021 0.75053 0.82265 0.87767 1.90707 1.52672 1.62238 1.41012 1.47696 1.72416 1.05697 1.09196 1.21828 1.03024 0.98955 0.82495 1.22395 1.02891 0.95258 0.87164 1.21862 0.92946 0.98869 0.88513 1.21118 1.11428 0.97433 0.91244 1.98376 1.83252 1.79312 1.40367 0.93035 0.92907 0.91310 0.91594 0.91949 0.93280 0.92484 0.92073 0.91448 0.91454 0.81312 0.91350 0.90021 0.90363 0.90954 0.88156 0.91020 0.81519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.91 71.98 0.71 -2.61 16 2 C -0.12 -3.23 5.93 30.59 0.18 -3.04 16 3 C -0.11 -3.98 5.52 30.60 0.17 -3.81 16 4 C 0.12 4.68 3.22 86.38 0.28 4.96 16 5 N -0.44 -19.77 1.96 -517.83 -1.01 -20.78 16 6 C -0.30 -14.80 6.36 84.07 0.53 -14.27 16 7 H 0.09 4.86 6.40 -2.91 -0.02 4.84 16 8 C 0.05 2.33 5.27 84.90 0.45 2.77 16 9 N -0.90 -48.32 13.96 21.66 0.30 -48.01 16 10 Si 0.89 40.30 26.53 68.60 1.82 42.12 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.23 -9.83 4.91 99.48 0.49 -9.34 16 14 C 0.39 16.52 7.30 133.29 0.97 17.49 16 15 N -0.56 -21.84 9.09 -192.20 -1.75 -23.58 16 16 C 0.21 7.32 10.77 85.08 0.92 8.24 16 17 C -0.29 -9.51 5.39 -19.97 -0.11 -9.61 16 18 C 0.58 17.88 7.41 86.70 0.64 18.52 16 19 O -0.58 -21.50 16.17 -4.03 -0.07 -21.56 16 20 N -0.62 -14.19 3.27 -875.70 -2.87 -17.06 16 21 C 0.08 1.36 10.67 127.77 1.36 2.73 16 22 C 0.06 1.12 8.86 127.77 1.13 2.26 16 23 C 0.00 0.11 7.39 22.72 0.17 0.28 16 24 C -0.18 -6.98 6.31 22.53 0.14 -6.84 16 25 Cl -0.04 -1.74 23.80 -2.72 -0.06 -1.80 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 2.06 8.00 -2.38 -0.02 2.04 16 33 H 0.06 2.52 5.04 -2.39 -0.01 2.50 16 34 H 0.07 2.66 7.46 -2.38 -0.02 2.64 16 35 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 36 H 0.17 5.21 8.00 -2.91 -0.02 5.19 16 37 H 0.07 1.47 6.91 -2.39 -0.02 1.45 16 38 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.10 7.09 -2.39 -0.02 1.08 16 41 H 0.10 1.15 8.06 -2.38 -0.02 1.13 16 42 H 0.07 1.50 5.37 -2.39 -0.01 1.48 16 43 H 0.17 4.33 5.01 -2.91 -0.01 4.32 16 Total: -1.00 -61.33 355.00 4.72 -56.60 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.81 Total: 17.01 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 7.55 Total: 17.06 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -5.33 Total: -109.43 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.07 Total: -21.56 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.82 Total: 42.12 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.06 Total: -1.80 kcal Total: -61.33 4.72 -56.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.888 kcal (2) G-P(sol) polarization free energy of solvation -61.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds