Wall clock time and date at job start Tue Mar 31 2020 14:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36022 * 120.33612 * 2 1 4 4 C 1.40470 * 119.69604 * 179.97438 * 3 2 1 5 5 C 1.34960 * 120.29559 * 0.02657 * 4 3 2 6 6 N 1.36481 * 120.61223 * 359.94851 * 5 4 3 7 7 C 1.36833 * 132.56984 * 180.32919 * 6 5 4 8 8 C 1.35103 * 107.18186 * 180.10345 * 7 6 5 9 9 C 1.50699 * 125.68798 * 179.90278 * 8 7 6 10 10 N 1.46499 * 109.47038 * 94.71416 * 9 8 7 11 11 C 1.38806 * 119.99861 * 180.27185 * 10 9 8 12 12 C 1.38628 * 120.21670 * 359.45887 * 11 10 9 13 13 C 1.38225 * 120.21291 * 179.69604 * 12 11 10 14 14 C 1.38790 * 120.66571 * 0.60018 * 13 12 11 15 15 C 1.37737 * 120.42607 * 359.67245 * 14 13 12 16 16 F 1.35096 * 120.11424 * 180.02562 * 15 14 13 17 17 C 1.40992 * 119.76593 * 0.02967 * 15 14 13 18 18 C 1.41000 * 120.31774 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99696 * 143.55141 * 18 17 15 20 20 C 1.39908 * 119.99995 * 323.54067 * 18 17 15 21 21 N 1.30910 * 120.00290 * 339.84255 * 20 18 17 22 22 Si 1.86808 * 119.99807 * 159.83241 * 20 18 17 23 23 H 1.48499 * 109.46753 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46655 * 120.00261 * 22 20 18 25 25 H 1.48492 * 109.47104 * 240.00732 * 22 20 18 26 26 N 1.33513 * 108.62417 * 359.63874 * 8 7 6 27 27 C 1.32565 * 109.15970 * 0.22884 * 26 8 7 28 28 H 1.09001 * 109.47237 * 270.02395 * 1 2 3 29 29 H 1.09005 * 109.46871 * 30.02299 * 1 2 3 30 30 H 1.09005 * 109.46688 * 150.01998 * 1 2 3 31 31 H 1.08001 * 120.15060 * 359.95773 * 3 2 1 32 32 H 1.07998 * 119.85050 * 180.02562 * 4 3 2 33 33 H 1.08000 * 119.69104 * 180.02562 * 5 4 3 34 34 H 1.08001 * 126.40914 * 359.97438 * 7 6 5 35 35 H 1.09003 * 109.46889 * 334.71492 * 9 8 7 36 36 H 1.08998 * 109.47298 * 214.71290 * 9 8 7 37 37 H 0.97002 * 120.00021 * 0.02562 * 10 9 8 38 38 H 1.07996 * 119.89068 * 359.97438 * 12 11 10 39 39 H 1.07999 * 119.66611 * 180.29735 * 13 12 11 40 40 H 1.07993 * 119.78664 * 179.70133 * 14 13 12 41 41 H 0.96998 * 119.99604 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1740 0.0000 4 6 3.5987 1.1583 0.0005 5 6 4.2664 -0.0145 0.0005 6 7 3.5895 -1.1997 0.0010 7 6 4.0055 -2.5032 0.0069 8 6 2.8972 -3.2758 0.0019 9 6 2.8759 -4.7827 0.0034 10 7 2.7482 -5.2678 1.3799 11 6 2.7124 -6.6318 1.6344 12 6 2.7860 -7.5389 0.5887 13 6 2.7567 -8.8973 0.8428 14 6 2.6412 -9.3721 2.1418 15 6 2.5606 -8.4948 3.2006 16 9 2.4488 -8.9639 4.4625 17 6 2.5950 -7.1055 2.9626 18 6 2.5128 -6.1970 4.0378 19 1 3.0819 -5.2794 4.0140 20 6 1.6938 -6.4841 5.1351 21 7 0.7240 -7.3556 5.0179 22 14 1.9843 -5.6240 6.7678 23 1 3.1329 -4.6917 6.6385 24 1 0.7685 -4.8611 7.1484 25 1 2.2821 -6.6350 7.8138 26 7 1.8239 -2.4818 0.0011 27 6 2.2189 -1.2163 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5136 31 1 1.6620 2.1138 -0.0007 32 1 4.1466 2.0889 0.0010 33 1 5.3464 -0.0152 0.0014 34 1 5.0284 -2.8497 0.0123 35 1 3.8023 -5.1595 -0.4302 36 1 2.0293 -5.1347 -0.5859 37 1 2.6922 -4.6358 2.1136 38 1 2.8710 -7.1831 -0.4274 39 1 2.8194 -9.5961 0.0218 40 1 2.6148 -10.4363 2.3236 41 1 0.1565 -7.5549 5.7789 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169023113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:12 Heat of formation + Delta-G solvation = 70.983793 kcal Electronic energy + Delta-G solvation = -26184.435538 eV Core-core repulsion = 22365.823168 eV Total energy + Delta-G solvation = -3818.612369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.76546 -42.86855 -38.10734 -37.48523 -34.76513 -34.21012 -33.42688 -31.18984 -30.06330 -29.30513 -27.77696 -27.18631 -25.66203 -24.73116 -22.89020 -22.21846 -21.17957 -20.45034 -19.84342 -17.66851 -17.27357 -17.01854 -16.48542 -16.04128 -15.68468 -15.23333 -14.79949 -14.39151 -14.28336 -14.10713 -13.85117 -13.60074 -13.51169 -13.33344 -13.19467 -12.75351 -12.62204 -12.29631 -11.97977 -11.85540 -11.77873 -11.58500 -11.21834 -11.14267 -11.09927 -10.72531 -10.67761 -10.51566 -10.05632 -9.99578 -9.43857 -8.91462 -8.82154 -8.75858 -7.87493 -7.06048 -6.64145 -6.28827 -4.13340 0.58202 1.16799 2.49688 2.73384 2.84049 3.00622 3.18362 3.22746 3.23801 3.38239 4.07113 4.09643 4.24169 4.52359 4.60590 4.68579 4.79048 4.84151 5.14141 5.23689 5.28736 5.38770 5.52861 5.54278 5.68813 5.78575 5.88151 5.96107 6.04951 6.15573 6.17615 6.22157 6.38917 6.50021 6.58400 6.61899 7.00208 7.07594 7.30310 7.44259 7.44863 7.71366 7.89920 7.92506 8.18098 8.43883 8.62755 8.81631 9.00324 9.09887 10.41023 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.013248 B = 0.003473 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.975807 B = 8060.852621 C = 9303.804607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.037 4.037 3 C -0.119 4.119 4 C -0.140 4.140 5 C 0.048 3.952 6 N -0.363 5.363 7 C -0.080 4.080 8 C 0.057 3.943 9 C 0.216 3.784 10 N -0.737 5.737 11 C 0.153 3.847 12 C -0.194 4.194 13 C -0.162 4.162 14 C -0.181 4.181 15 C 0.060 3.940 16 F -0.144 7.144 17 C 0.041 3.959 18 C -0.475 4.475 19 H 0.074 0.926 20 C 0.082 3.918 21 N -0.785 5.785 22 Si 0.900 3.100 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.273 1.273 26 N -0.469 5.469 27 C 0.219 3.781 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.161 0.839 34 H 0.185 0.815 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.399 0.601 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.941 16.409 -10.064 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.039 4.039 3 C -0.143 4.143 4 C -0.161 4.161 5 C -0.074 4.074 6 N -0.034 5.034 7 C -0.212 4.212 8 C -0.076 4.076 9 C 0.090 3.910 10 N -0.371 5.371 11 C 0.052 3.948 12 C -0.217 4.217 13 C -0.182 4.182 14 C -0.202 4.202 15 C 0.038 3.962 16 F -0.122 7.122 17 C 0.036 3.964 18 C -0.506 4.506 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.410 5.410 22 Si 0.725 3.275 23 H -0.188 1.188 24 H -0.204 1.204 25 H -0.198 1.198 26 N -0.189 5.189 27 C -0.025 4.025 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.178 0.822 34 H 0.202 0.798 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.235 0.765 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.000 15.974 -10.089 19.313 hybrid contribution 0.923 0.783 1.320 1.791 sum 4.923 16.757 -8.769 19.543 Atomic orbital electron populations 1.20686 0.88934 1.03476 1.03224 1.19052 0.96999 0.88392 0.99499 1.20881 0.93710 0.97766 1.01941 1.20738 0.94787 0.97035 1.03549 1.21569 0.98584 0.83363 1.03859 1.42805 1.08820 1.06020 1.45778 1.22530 1.01379 0.80329 1.16930 1.21000 0.87874 0.96591 1.02130 1.19284 1.01137 0.83901 0.86698 1.43908 1.83965 1.04106 1.05136 1.17605 1.01868 0.82762 0.92540 1.20057 1.12712 0.92925 0.96052 1.19924 1.09499 0.94144 0.94615 1.20415 1.09468 0.97505 0.92796 1.17433 1.08915 0.91577 0.78287 1.91310 1.93576 1.88640 1.38704 1.17060 0.97381 0.91079 0.90883 1.18902 1.24546 1.05651 1.01456 0.90775 1.25634 0.93450 0.94614 0.99940 1.69811 1.11797 1.27633 1.31791 0.86393 0.78968 0.79744 0.82360 1.18809 1.20372 1.19821 1.70684 1.29554 0.97609 1.21033 1.20810 0.80193 0.94429 1.07051 0.90370 0.91057 0.90175 0.84267 0.83405 0.82180 0.79823 0.91744 0.91632 0.76506 0.88641 0.88582 0.88572 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.03 36.01 0.36 -0.70 16 2 C -0.04 -0.43 5.90 -104.40 -0.62 -1.05 16 3 C -0.12 -1.04 9.72 -39.54 -0.38 -1.42 16 4 C -0.14 -1.07 9.99 -39.91 -0.40 -1.47 16 5 C 0.05 0.44 10.95 -16.65 -0.18 0.26 16 6 N -0.36 -4.69 2.94 -62.66 -0.18 -4.87 16 7 C -0.08 -1.08 11.66 -16.43 -0.19 -1.27 16 8 C 0.06 0.93 6.43 -82.98 -0.53 0.39 16 9 C 0.22 3.67 5.43 -5.19 -0.03 3.64 16 10 N -0.74 -15.41 5.63 -59.40 -0.33 -15.74 16 11 C 0.15 3.65 6.68 -83.32 -0.56 3.09 16 12 C -0.19 -4.26 9.29 -39.44 -0.37 -4.63 16 13 C -0.16 -3.57 10.03 -39.38 -0.40 -3.97 16 14 C -0.18 -4.39 9.99 -39.56 -0.40 -4.78 16 15 C 0.06 1.63 6.68 -38.72 -0.26 1.37 16 16 F -0.14 -4.08 14.26 2.25 0.03 -4.05 16 17 C 0.04 1.12 5.41 -106.56 -0.58 0.54 16 18 C -0.48 -12.93 8.13 -37.91 -0.31 -13.24 16 19 H 0.07 1.94 7.14 -52.49 -0.37 1.56 16 20 C 0.08 2.20 4.50 -17.32 -0.08 2.12 16 21 N -0.79 -22.03 11.13 55.55 0.62 -21.41 16 22 Si 0.90 20.21 29.61 -169.99 -5.03 15.18 16 23 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 N -0.47 -8.17 11.31 -9.01 -0.10 -8.28 16 27 C 0.22 3.25 7.52 -156.04 -1.17 2.08 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 31 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.18 1.92 8.06 -52.49 -0.42 1.49 16 35 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 36 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 37 H 0.40 8.78 6.90 -40.82 -0.28 8.50 16 38 H 0.10 1.82 6.71 -52.49 -0.35 1.47 16 39 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.28 7.21 8.30 -40.82 -0.34 6.87 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -32.86 352.11 -10.54 -43.41 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -4.77 Total: 9.49 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -6.08 Total: -19.03 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.00 Total: -50.31 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.03 Total: -4.05 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.86 -10.54 -43.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169023113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.391 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds