Wall clock time and date at job start Tue Mar 31 2020 14:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00016 * 2 1 4 4 H 1.48494 * 109.47296 * 240.00426 * 3 2 1 5 5 H 1.48500 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47007 * 120.00007 * 3 2 1 7 7 C 1.37875 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.46902 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46742 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47530 * 300.00143 * 11 10 9 13 13 N 1.46906 * 109.47281 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99793 * 154.99852 * 13 12 11 15 15 C 1.53000 * 109.46769 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46912 * 180.02562 * 15 14 13 17 17 C 1.38459 * 120.01976 * 90.00301 * 16 15 14 18 18 F 1.35096 * 120.01818 * 359.97438 * 17 16 15 19 19 C 1.38443 * 119.96169 * 179.97438 * 17 16 15 20 20 C 1.38231 * 120.00353 * 359.97438 * 19 17 16 21 21 C 1.38206 * 120.03621 * 359.97438 * 20 19 17 22 22 C 1.38291 * 120.01607 * 269.72427 * 16 15 14 23 23 Cl 1.73602 * 120.00435 * 0.02562 * 22 16 15 24 24 C 1.53001 * 109.47064 * 60.00356 * 12 11 10 25 25 C 1.53000 * 109.47016 * 299.99544 * 9 7 2 26 26 H 0.96995 * 120.00427 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47335 * 60.00117 * 9 7 2 28 28 H 1.08994 * 109.46963 * 59.99971 * 10 9 7 29 29 H 1.08994 * 109.47193 * 299.99886 * 10 9 7 30 30 H 1.08999 * 109.47332 * 179.97438 * 11 10 9 31 31 H 1.09003 * 109.47111 * 60.00212 * 11 10 9 32 32 H 1.08994 * 109.47169 * 300.00255 * 12 11 10 33 33 H 1.00898 * 110.99995 * 31.04775 * 13 12 11 34 34 H 1.09001 * 109.46874 * 60.00179 * 14 13 12 35 35 H 1.08992 * 109.47407 * 300.00197 * 14 13 12 36 36 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 37 37 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 38 38 H 1.08003 * 120.00056 * 179.97438 * 19 17 16 39 39 H 1.07991 * 119.98233 * 180.02562 * 20 19 17 40 40 H 1.08000 * 119.98254 * 180.02562 * 21 20 19 41 41 H 1.08994 * 109.47210 * 59.99924 * 24 12 11 42 42 H 1.09000 * 109.47326 * 180.02562 * 24 12 11 43 43 H 1.08994 * 109.47536 * 300.00450 * 25 9 7 44 44 H 1.09005 * 109.46758 * 60.00197 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4804 -4.9870 -0.0012 12 6 0.6021 -5.0684 1.2490 13 7 -0.1328 -6.3404 1.2492 14 6 -0.4981 -6.7369 2.6157 15 6 -1.2608 -8.0627 2.5752 16 6 -1.6362 -8.4692 3.9770 17 6 -2.8426 -8.0582 4.5179 18 9 -3.6838 -7.2920 3.7895 19 6 -3.1865 -8.4328 5.8055 20 6 -2.3258 -9.2173 6.5503 21 6 -1.1220 -9.6285 6.0101 22 6 -0.7783 -9.2579 4.7217 23 17 0.7317 -9.7793 4.0422 24 6 -0.3922 -3.9055 1.2502 25 6 0.3720 -2.5805 1.2491 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 2.8727 -3.6047 0.8877 29 1 2.8713 -3.6039 -0.8922 30 1 2.1887 -5.8155 -0.0026 31 1 0.8528 -5.0447 -0.8905 32 1 1.2297 -5.0107 2.1383 33 1 0.3995 -7.0656 0.7923 34 1 -1.1300 -5.9681 3.0605 35 1 0.4055 -6.8553 3.2136 36 1 -2.1645 -7.9439 1.9774 37 1 -0.6294 -8.8317 2.1303 38 1 -4.1272 -8.1122 6.2282 39 1 -2.5945 -9.5096 7.5546 40 1 -0.4504 -10.2417 6.5926 41 1 -1.0197 -3.9631 0.3609 42 1 -1.0176 -3.9632 2.1411 43 1 0.9990 -2.5229 2.1388 44 1 -0.3364 -1.7520 1.2496 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:19 Heat of formation + Delta-G solvation = -55.419350 kcal Electronic energy + Delta-G solvation = -24872.163592 eV Core-core repulsion = 21149.177465 eV Total energy + Delta-G solvation = -3722.986127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.17973 -39.69782 -38.16992 -36.81091 -35.54471 -33.33939 -31.92454 -30.80810 -29.68523 -29.26068 -27.14930 -24.35869 -23.23724 -23.06643 -21.81170 -21.08460 -20.31303 -18.63045 -18.05611 -17.17104 -16.30805 -16.24635 -15.96742 -15.37577 -15.13045 -14.73218 -14.62735 -14.29184 -13.87502 -13.56282 -13.48660 -13.40792 -12.93075 -12.78120 -12.43518 -12.24471 -11.91719 -11.75442 -11.70326 -11.56941 -11.20329 -11.16769 -11.03613 -10.89734 -10.64551 -10.41500 -10.30683 -10.10847 -9.77435 -9.27690 -9.16395 -9.07382 -8.84621 -8.60870 -8.22960 -8.10271 -5.91003 -3.97259 0.58325 0.66526 1.68399 3.01127 3.35410 3.40094 3.42597 3.87544 4.09985 4.37746 4.39985 4.48962 4.64997 4.80043 5.04911 5.05788 5.18448 5.37717 5.43382 5.46965 5.55274 5.61208 5.63283 5.67923 5.77498 5.95723 5.99468 6.03825 6.21424 6.33504 6.39870 6.48406 6.49901 6.67953 6.77651 6.81478 7.01036 7.21233 7.31330 7.45240 7.63308 7.66148 7.83006 8.10882 8.24915 8.54903 9.06838 9.66849 11.14426 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.002531 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.489829 B =11061.345935 C =11748.901017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.106 4.106 11 C -0.115 4.115 12 C 0.093 3.907 13 N -0.686 5.686 14 C 0.070 3.930 15 C -0.085 4.085 16 C -0.104 4.104 17 C 0.117 3.883 18 F -0.125 7.125 19 C -0.149 4.149 20 C -0.085 4.085 21 C -0.121 4.121 22 C -0.009 4.009 23 Cl -0.053 7.053 24 C -0.101 4.101 25 C -0.109 4.109 26 H 0.259 0.741 27 H 0.026 0.974 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.334 0.666 34 H 0.073 0.927 35 H 0.029 0.971 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.029 0.971 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.782 -22.469 12.498 26.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.144 4.144 11 C -0.153 4.153 12 C -0.016 4.016 13 N -0.316 5.316 14 C -0.060 4.060 15 C -0.122 4.122 16 C -0.106 4.106 17 C 0.098 3.902 18 F -0.103 7.103 19 C -0.168 4.168 20 C -0.103 4.103 21 C -0.140 4.140 22 C -0.036 4.036 23 Cl -0.024 7.024 24 C -0.139 4.139 25 C -0.148 4.148 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.151 0.849 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.437 -22.054 12.267 25.815 hybrid contribution 1.283 0.714 0.310 1.501 sum -4.154 -21.340 12.577 25.117 Atomic orbital electron populations 1.69870 1.05804 1.26324 1.50881 1.24965 0.94825 0.98911 0.95304 0.86726 0.79646 0.83493 0.78509 1.20375 1.21362 1.20416 1.21208 0.92780 0.90883 1.50297 0.92968 1.18643 0.92566 0.91307 0.94383 1.21595 0.98600 0.94213 0.99991 1.21712 0.97655 0.98345 0.97585 1.21606 0.93905 0.88878 0.97221 1.60573 1.48958 1.05603 1.16516 1.21839 0.98143 0.95183 0.90807 1.20627 1.02530 0.98256 0.90818 1.19776 0.93267 0.99163 0.98386 1.17364 0.88474 0.94074 0.90308 1.91561 1.69398 1.72486 1.76901 1.21291 1.01945 1.00507 0.93016 1.20947 0.92822 0.96466 1.00077 1.21119 0.97869 1.01383 0.93595 1.20599 0.89041 0.99709 0.94264 1.98390 1.29908 1.89072 1.85021 1.21589 0.97175 0.94770 1.00392 1.21613 0.99569 0.95093 0.98501 0.93069 0.95635 0.93650 0.93369 0.94018 0.91749 0.94605 0.84901 0.90880 0.95254 0.89212 0.89926 0.84018 0.84052 0.84285 0.92269 0.94396 0.95221 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 11.32 55.43 0.63 -25.17 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.31 8.56 -34.44 -0.29 -14.60 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.05 1.24 2.10 -91.77 -0.19 1.05 16 10 C -0.11 -2.23 5.14 -26.73 -0.14 -2.37 16 11 C -0.11 -2.04 5.19 -26.73 -0.14 -2.18 16 12 C 0.09 1.62 2.50 -67.71 -0.17 1.45 16 13 N -0.69 -10.16 6.31 -106.72 -0.67 -10.84 16 14 C 0.07 0.94 5.47 -3.82 -0.02 0.91 16 15 C -0.08 -0.96 5.04 -27.88 -0.14 -1.10 16 16 C -0.10 -1.10 5.14 -104.52 -0.54 -1.63 16 17 C 0.12 1.23 7.24 -39.42 -0.29 0.94 16 18 F -0.13 -1.52 16.48 2.25 0.04 -1.48 16 19 C -0.15 -1.18 10.03 -39.51 -0.40 -1.57 16 20 C -0.08 -0.55 10.04 -39.60 -0.40 -0.95 16 21 C -0.12 -0.89 9.83 -39.54 -0.39 -1.28 16 22 C -0.01 -0.09 6.31 -39.50 -0.25 -0.34 16 23 Cl -0.05 -0.50 27.29 -51.86 -1.42 -1.91 16 24 C -0.10 -2.06 5.42 -26.75 -0.15 -2.20 16 25 C -0.11 -2.63 4.98 -26.75 -0.13 -2.76 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.04 0.65 7.80 -51.93 -0.41 0.25 16 33 H 0.33 4.39 8.35 -39.29 -0.33 4.06 16 34 H 0.07 1.09 7.44 -51.93 -0.39 0.71 16 35 H 0.03 0.39 8.06 -51.93 -0.42 -0.02 16 36 H 0.09 1.07 7.64 -51.93 -0.40 0.67 16 37 H 0.08 0.86 6.89 -51.93 -0.36 0.50 16 38 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 40 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.04 0.74 7.45 -51.93 -0.39 0.35 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -29.16 367.44 -11.39 -40.55 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.76 Total: 1.76 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -3.72 Total: -25.00 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.05 Total: -36.01 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.42 Total: -1.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.16 -11.39 -40.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.871 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds