Wall clock time and date at job start Tue Mar 31 2020 14:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00016 * 2 1 4 4 H 1.48494 * 109.47296 * 240.00426 * 3 2 1 5 5 H 1.48500 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47007 * 120.00007 * 3 2 1 7 7 C 1.37875 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.46902 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46742 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47530 * 300.00143 * 11 10 9 13 13 N 1.46906 * 109.47281 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99793 * 154.99852 * 13 12 11 15 15 C 1.53000 * 109.46769 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46912 * 180.02562 * 15 14 13 17 17 C 1.38459 * 120.01976 * 90.00301 * 16 15 14 18 18 F 1.35096 * 120.01818 * 359.97438 * 17 16 15 19 19 C 1.38443 * 119.96169 * 179.97438 * 17 16 15 20 20 C 1.38231 * 120.00353 * 359.97438 * 19 17 16 21 21 C 1.38206 * 120.03621 * 359.97438 * 20 19 17 22 22 C 1.38291 * 120.01607 * 269.72427 * 16 15 14 23 23 Cl 1.73602 * 120.00435 * 0.02562 * 22 16 15 24 24 C 1.53001 * 109.47064 * 60.00356 * 12 11 10 25 25 C 1.53000 * 109.47016 * 299.99544 * 9 7 2 26 26 H 0.96995 * 120.00427 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47335 * 60.00117 * 9 7 2 28 28 H 1.08994 * 109.46963 * 59.99971 * 10 9 7 29 29 H 1.08994 * 109.47193 * 299.99886 * 10 9 7 30 30 H 1.08999 * 109.47332 * 179.97438 * 11 10 9 31 31 H 1.09003 * 109.47111 * 60.00212 * 11 10 9 32 32 H 1.08994 * 109.47169 * 300.00255 * 12 11 10 33 33 H 1.00898 * 110.99995 * 31.04775 * 13 12 11 34 34 H 1.09001 * 109.46874 * 60.00179 * 14 13 12 35 35 H 1.08992 * 109.47407 * 300.00197 * 14 13 12 36 36 H 1.09002 * 109.47398 * 300.00295 * 15 14 13 37 37 H 1.09001 * 109.47194 * 60.00475 * 15 14 13 38 38 H 1.08003 * 120.00056 * 179.97438 * 19 17 16 39 39 H 1.07991 * 119.98233 * 180.02562 * 20 19 17 40 40 H 1.08000 * 119.98254 * 180.02562 * 21 20 19 41 41 H 1.08994 * 109.47210 * 59.99924 * 24 12 11 42 42 H 1.09000 * 109.47326 * 180.02562 * 24 12 11 43 43 H 1.08994 * 109.47536 * 300.00450 * 25 9 7 44 44 H 1.09005 * 109.46758 * 60.00197 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4804 -4.9870 -0.0012 12 6 0.6021 -5.0684 1.2490 13 7 -0.1328 -6.3404 1.2492 14 6 -0.4981 -6.7369 2.6157 15 6 -1.2608 -8.0627 2.5752 16 6 -1.6362 -8.4692 3.9770 17 6 -2.8426 -8.0582 4.5179 18 9 -3.6838 -7.2920 3.7895 19 6 -3.1865 -8.4328 5.8055 20 6 -2.3258 -9.2173 6.5503 21 6 -1.1220 -9.6285 6.0101 22 6 -0.7783 -9.2579 4.7217 23 17 0.7317 -9.7793 4.0422 24 6 -0.3922 -3.9055 1.2502 25 6 0.3720 -2.5805 1.2491 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 2.8727 -3.6047 0.8877 29 1 2.8713 -3.6039 -0.8922 30 1 2.1887 -5.8155 -0.0026 31 1 0.8528 -5.0447 -0.8905 32 1 1.2297 -5.0107 2.1383 33 1 0.3995 -7.0656 0.7923 34 1 -1.1300 -5.9681 3.0605 35 1 0.4055 -6.8553 3.2136 36 1 -2.1645 -7.9439 1.9774 37 1 -0.6294 -8.8317 2.1303 38 1 -4.1272 -8.1122 6.2282 39 1 -2.5945 -9.5096 7.5546 40 1 -0.4504 -10.2417 6.5926 41 1 -1.0197 -3.9631 0.3609 42 1 -1.0176 -3.9632 2.1411 43 1 0.9990 -2.5229 2.1388 44 1 -0.3364 -1.7520 1.2496 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:18 Heat of formation + Delta-G solvation = -69.765313 kcal Electronic energy + Delta-G solvation = -24872.785680 eV Core-core repulsion = 21149.177465 eV Total energy + Delta-G solvation = -3723.608215 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.99652 -40.39566 -39.70288 -37.48601 -36.89326 -34.83988 -33.43440 -31.43706 -31.41498 -30.66091 -28.45223 -26.12480 -24.25562 -23.87205 -23.26594 -22.12339 -21.97549 -20.38263 -18.75638 -18.39124 -17.91495 -17.04518 -16.89128 -16.63012 -16.42807 -15.92707 -15.71858 -15.66981 -15.00681 -14.69623 -14.69471 -14.41136 -14.36426 -14.15663 -13.96542 -13.29183 -13.24592 -12.99407 -12.90483 -12.73671 -12.55563 -12.42749 -12.39146 -12.32878 -12.05433 -11.97040 -11.84706 -11.75999 -11.66502 -11.16126 -10.74963 -10.52505 -10.35605 -9.84390 -9.74431 -9.37361 -8.05876 -6.20492 -0.05013 0.01202 1.00891 1.40858 1.42267 1.49892 2.38640 2.44013 3.06174 3.20093 3.22435 3.68505 3.70068 3.90095 3.93445 4.01036 4.17817 4.21848 4.27302 4.41115 4.44766 4.58523 4.59464 4.67471 4.76528 4.84132 4.84358 4.88705 4.97649 4.98376 5.05204 5.11976 5.15315 5.17504 5.21169 5.32990 5.41946 5.49082 5.61849 5.70592 5.71102 6.04335 6.09190 6.20828 6.42532 6.54490 6.92679 7.47405 8.97866 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.002531 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.489829 B =11061.345935 C =11748.901017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.052 0.948 9 C 0.046 3.954 10 C -0.099 4.099 11 C -0.107 4.107 12 C 0.104 3.896 13 N -0.686 5.686 14 C 0.076 3.924 15 C -0.075 4.075 16 C -0.121 4.121 17 C 0.090 3.910 18 F -0.143 7.143 19 C -0.148 4.148 20 C -0.073 4.073 21 C -0.117 4.117 22 C -0.020 4.020 23 Cl -0.057 7.057 24 C -0.091 4.091 25 C -0.100 4.100 26 H 0.259 0.741 27 H -0.008 1.008 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.348 0.652 34 H 0.053 0.947 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.161 0.839 39 H 0.179 0.821 40 H 0.163 0.837 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.023 0.977 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.902 -24.311 14.170 28.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.070 0.930 9 C 0.027 3.973 10 C -0.138 4.138 11 C -0.144 4.144 12 C -0.006 4.006 13 N -0.318 5.318 14 C -0.053 4.053 15 C -0.112 4.112 16 C -0.124 4.124 17 C 0.070 3.930 18 F -0.122 7.122 19 C -0.166 4.166 20 C -0.091 4.091 21 C -0.136 4.136 22 C -0.047 4.047 23 Cl -0.028 7.028 24 C -0.130 4.130 25 C -0.139 4.139 26 H 0.068 0.932 27 H 0.010 0.990 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.168 0.832 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.178 0.822 39 H 0.196 0.804 40 H 0.181 0.819 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.548 -23.919 13.935 28.053 hybrid contribution 0.972 1.259 -0.154 1.598 sum -3.576 -22.659 13.781 26.761 Atomic orbital electron populations 1.70028 1.07203 1.27031 1.51449 1.25771 0.95666 1.02423 0.94971 0.85703 0.78441 0.79237 0.78829 1.19606 1.21029 1.19661 1.21620 0.93021 0.92414 1.50358 0.93023 1.18620 0.93051 0.92424 0.93189 1.21461 0.97828 0.94325 1.00152 1.21616 0.97937 0.97550 0.97333 1.21333 0.92968 0.89080 0.97201 1.60410 1.48668 1.05010 1.17714 1.21773 0.98098 0.95724 0.89732 1.20462 1.01778 0.97224 0.91772 1.19733 0.93997 1.00487 0.98154 1.17719 0.88704 0.95072 0.91462 1.91510 1.69950 1.73206 1.77545 1.21611 1.02969 1.00084 0.91973 1.21397 0.91710 0.94718 1.01238 1.21494 0.98488 1.00801 0.92802 1.20749 0.88846 1.00025 0.95080 1.98385 1.30073 1.89074 1.85238 1.21420 0.97358 0.94345 0.99860 1.21396 0.98759 0.95983 0.97739 0.93161 0.99026 0.93467 0.93144 0.90473 0.92230 0.94624 0.83230 0.92884 0.94873 0.90362 0.88982 0.82185 0.80356 0.81939 0.93712 0.93960 0.95782 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.87 11.32 21.45 0.24 -54.62 16 2 C 0.01 0.57 5.30 84.65 0.45 1.02 16 3 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.54 -30.46 8.56 25.60 0.22 -30.24 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.05 2.36 2.10 -11.54 -0.02 2.34 16 10 C -0.10 -4.15 5.14 30.60 0.16 -3.99 16 11 C -0.11 -3.63 5.19 30.59 0.16 -3.47 16 12 C 0.10 3.55 2.50 44.91 0.11 3.66 16 13 N -0.69 -19.61 6.31 -491.57 -3.10 -22.71 16 14 C 0.08 2.00 5.47 86.30 0.47 2.47 16 15 C -0.07 -1.66 5.04 29.85 0.15 -1.50 16 16 C -0.12 -2.48 5.14 -19.80 -0.10 -2.59 16 17 C 0.09 1.84 7.24 22.37 0.16 2.00 16 18 F -0.14 -3.58 16.48 44.97 0.74 -2.84 16 19 C -0.15 -2.04 10.03 22.32 0.22 -1.81 16 20 C -0.07 -0.69 10.04 22.26 0.22 -0.47 16 21 C -0.12 -1.39 9.83 22.30 0.22 -1.17 16 22 C -0.02 -0.34 6.31 22.32 0.14 -0.20 16 23 Cl -0.06 -0.97 27.29 -2.72 -0.07 -1.04 16 24 C -0.09 -3.81 5.42 30.58 0.17 -3.64 16 25 C -0.10 -4.99 4.98 30.58 0.15 -4.84 16 26 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 32 H 0.04 1.25 7.80 -2.39 -0.02 1.23 16 33 H 0.35 8.43 8.35 -89.70 -0.75 7.68 16 34 H 0.05 1.61 7.44 -2.39 -0.02 1.59 16 35 H 0.03 0.85 8.06 -2.39 -0.02 0.83 16 36 H 0.08 1.89 7.64 -2.39 -0.02 1.87 16 37 H 0.09 1.82 6.89 -2.39 -0.02 1.80 16 38 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 40 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 41 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.04 1.69 7.45 -2.39 -0.02 1.67 16 43 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 3.21 6.07 -2.38 -0.01 3.19 16 Total: -1.00 -65.14 367.44 2.96 -62.18 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.25 Total: 14.74 kcal Atomic # 6 Polarization: -45.33 SS G_CDS: 2.88 Total: -42.45 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -2.86 Total: -77.33 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.74 Total: -2.84 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.07 Total: -1.04 kcal Total: -65.14 2.96 -62.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.586 kcal (2) G-P(sol) polarization free energy of solvation -65.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds