Wall clock time and date at job start Tue Mar 31 2020 14:47:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08996 * 109.49542 * 2 1
4 4 C 1.52764 * 109.58846 * 240.04736 * 2 1 3
5 5 N 1.46929 * 109.00361 * 185.53613 * 4 2 1
6 6 C 1.34773 * 120.62906 * 233.58020 * 5 4 2
7 7 O 1.21700 * 120.00112 * 359.60752 * 6 5 4
8 8 C 1.46669 * 119.99917 * 179.87579 * 6 5 4
9 9 C 1.37897 * 126.22227 * 208.70876 * 8 6 5
10 10 C 1.39890 * 107.09267 * 179.88529 * 9 8 6
11 11 Cl 1.73600 * 126.07194 * 180.12700 * 10 9 8
12 12 C 1.35510 * 107.85197 * 0.38141 * 10 9 8
13 13 N 1.35631 * 108.85410 * 359.76336 * 12 10 9
14 14 H 0.97004 * 125.67702 * 180.02562 * 13 12 10
15 15 C 1.46920 * 118.74003 * 53.31006 * 5 4 2
16 16 C 1.53197 * 108.77684 * 306.64224 * 15 5 4
17 17 C 1.53035 * 109.49633 * 120.06497 * 2 1 3
18 18 H 1.09000 * 109.45279 * 61.33462 * 17 2 1
19 19 C 1.52997 * 109.45990 * 301.36838 * 17 2 1
20 20 N 1.46501 * 109.47226 * 174.93404 * 19 17 2
21 21 C 1.36939 * 120.00297 * 180.02562 * 20 19 17
22 22 H 1.08001 * 119.99962 * 359.97438 * 21 20 19
23 23 C 1.38809 * 120.00166 * 179.97438 * 21 20 19
24 24 N 1.31616 * 120.00174 * 179.97438 * 23 21 20
25 25 Si 1.86807 * 120.00111 * 359.97438 * 23 21 20
26 26 H 1.48504 * 109.47031 * 89.99607 * 25 23 21
27 27 H 1.48495 * 109.47259 * 210.00095 * 25 23 21
28 28 H 1.48504 * 109.46944 * 330.00110 * 25 23 21
29 29 H 1.08999 * 109.47503 * 299.93541 * 1 2 3
30 30 H 1.09005 * 109.47242 * 59.93369 * 1 2 3
31 31 H 1.09000 * 109.47395 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.50744 * 65.65450 * 4 2 1
33 33 H 1.08999 * 109.42999 * 305.37208 * 4 2 1
34 34 H 1.08005 * 126.45501 * 0.02624 * 9 8 6
35 35 H 1.08005 * 125.57626 * 179.72755 * 12 10 9
36 36 H 1.09005 * 109.58747 * 66.42925 * 15 5 4
37 37 H 1.08997 * 109.59180 * 186.71066 * 15 5 4
38 38 H 1.09000 * 109.49864 * 174.58677 * 16 15 5
39 39 H 1.08994 * 109.49596 * 294.65087 * 16 15 5
40 40 H 1.08997 * 109.47418 * 294.92962 * 19 17 2
41 41 H 1.09003 * 109.47085 * 54.93593 * 19 17 2
42 42 H 0.97004 * 119.99869 * 0.02562 * 20 19 17
43 43 H 0.97001 * 120.00182 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0422 -0.7186 -1.2470
5 7 3.5053 -0.8283 -1.1690
6 6 4.2818 -0.3846 -2.1771
7 8 3.7721 0.1062 -3.1673
8 6 5.7411 -0.4985 -2.0835
9 6 6.6635 0.3349 -2.6805
10 6 7.9324 -0.1357 -2.3266
11 17 9.4501 0.5546 -2.8101
12 6 7.7665 -1.2294 -1.5439
13 7 6.4390 -1.4601 -1.3888
14 1 6.0466 -2.1824 -0.8737
15 6 4.1059 -1.4255 0.0315
16 6 3.5708 -0.6939 1.2666
17 6 2.0407 -0.7227 1.2485
18 1 1.6971 -1.7571 1.2353
19 6 1.5030 -0.0230 2.4983
20 7 1.8910 -0.7834 3.6889
21 6 1.5188 -0.3462 4.9321
22 1 0.9395 0.5595 5.0349
23 6 1.8860 -1.0670 6.0600
24 7 1.5287 -0.6466 7.2549
25 14 2.8874 -2.6340 5.8822
26 1 4.3347 -2.3041 5.9262
27 1 2.5570 -3.5615 6.9937
28 1 2.5667 -3.2818 4.5849
29 1 -0.3634 0.5128 0.8905
30 1 -0.3634 0.5149 -0.8894
31 1 -0.3634 -1.0276 -0.0005
32 1 1.7652 -0.1497 -2.1345
33 1 1.6031 -1.7150 -1.2974
34 1 6.4469 1.1911 -3.3022
35 1 8.5614 -1.8211 -1.1143
36 1 3.8386 -2.4808 0.0875
37 1 5.1903 -1.3252 -0.0138
38 1 3.9334 -1.1884 2.1678
39 1 3.9158 0.3399 1.2550
40 1 1.9182 0.9830 2.5586
41 1 0.4160 0.0353 2.4428
42 1 2.4117 -1.5967 3.5965
43 1 1.7856 -1.1501 8.0432
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001183849448.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:47:50
Heat of formation + Delta-G solvation = 27.418111 kcal
Electronic energy + Delta-G solvation = -25549.601002 eV
Core-core repulsion = 21850.126938 eV
Total energy + Delta-G solvation = -3699.474063 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.130 amu
Computer time = 2.21 seconds
Orbital eigenvalues (eV)
-41.98760 -40.01622 -38.14101 -36.67848 -35.32825 -33.86097 -32.21788 -31.38489
-30.81195 -29.86994 -27.36052 -26.79986 -24.19486 -22.84044 -22.28392 -21.36240
-21.09519 -20.55893 -19.85830 -18.10217 -17.65619 -16.72886 -16.09733 -15.74246
-15.01619 -14.80699 -14.77241 -14.41877 -14.25519 -14.16880 -13.74442 -13.48618
-13.41308 -13.23282 -13.04355 -12.95662 -12.54213 -12.18959 -12.10595 -11.98748
-11.80392 -11.41061 -11.13852 -11.09321 -10.96723 -10.61495 -10.57316 -10.28791
-10.23244 -10.09486 -9.64189 -9.24839 -8.96896 -8.91322 -8.58986 -7.28131
-5.82246 -3.17814 1.08718 1.86148 2.09763 2.52474 2.72285 3.09498
3.28309 3.29644 3.37943 4.15630 4.44739 4.52001 4.56608 4.67260
4.76184 4.79348 4.84115 5.01249 5.04492 5.18555 5.31602 5.46918
5.51178 5.53123 5.57636 5.60696 5.64661 5.68318 5.81050 5.99085
6.05849 6.07800 6.10609 6.20250 6.27548 6.28431 6.33926 6.66175
6.73122 6.77633 7.06330 7.81893 7.94218 8.36768 9.15580 9.87649
10.07358 11.36409
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.013135 B = 0.003183 C = 0.002706
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2131.251041 B = 8794.410532 C =10344.139015
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.098 4.098
3 H 0.076 0.924
4 C 0.119 3.881
5 N -0.604 5.604
6 C 0.590 3.410
7 O -0.528 6.528
8 C -0.032 4.032
9 C -0.099 4.099
10 C -0.124 4.124
11 Cl -0.048 7.048
12 C 0.035 3.965
13 N -0.533 5.533
14 H 0.428 0.572
15 C 0.085 3.915
16 C -0.126 4.126
17 C -0.093 4.093
18 H 0.072 0.928
19 C 0.160 3.840
20 N -0.755 5.755
21 C -0.243 4.243
22 H 0.090 0.910
23 C 0.004 3.996
24 N -0.934 5.934
25 Si 0.884 3.116
26 H -0.284 1.284
27 H -0.291 1.291
28 H -0.278 1.278
29 H 0.071 0.929
30 H 0.054 0.946
31 H 0.056 0.944
32 H 0.094 0.906
33 H 0.069 0.931
34 H 0.156 0.844
35 H 0.182 0.818
36 H 0.074 0.926
37 H 0.085 0.915
38 H 0.083 0.917
39 H 0.071 0.929
40 H 0.026 0.974
41 H 0.034 0.966
42 H 0.359 0.641
43 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.520 -3.072 -21.048 23.730
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.117 4.117
3 H 0.095 0.905
4 C -0.003 4.003
5 N -0.337 5.337
6 C 0.378 3.622
7 O -0.404 6.404
8 C -0.145 4.145
9 C -0.126 4.126
10 C -0.157 4.157
11 Cl -0.020 7.020
12 C -0.102 4.102
13 N -0.135 5.135
14 H 0.273 0.727
15 C -0.038 4.038
16 C -0.164 4.164
17 C -0.112 4.112
18 H 0.090 0.910
19 C 0.033 3.967
20 N -0.401 5.401
21 C -0.373 4.373
22 H 0.108 0.892
23 C -0.192 4.192
24 N -0.582 5.582
25 Si 0.714 3.286
26 H -0.211 1.211
27 H -0.217 1.217
28 H -0.204 1.204
29 H 0.089 0.911
30 H 0.073 0.927
31 H 0.075 0.925
32 H 0.113 0.887
33 H 0.088 0.912
34 H 0.174 0.826
35 H 0.199 0.801
36 H 0.093 0.907
37 H 0.102 0.898
38 H 0.102 0.898
39 H 0.090 0.910
40 H 0.044 0.956
41 H 0.052 0.948
42 H 0.192 0.808
43 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 10.134 -2.742 -21.357 23.798
hybrid contribution 0.840 -1.469 0.476 1.758
sum 10.975 -4.211 -20.881 23.963
Atomic orbital electron populations
1.21837 0.93970 1.02289 1.02436 1.21381 0.96448 1.00159 0.93737
0.90526 1.21688 0.77774 1.01219 0.99620 1.48053 1.07463 1.60457
1.17714 1.17021 0.84072 0.78270 0.82848 1.90849 1.73679 1.45149
1.30689 1.20287 0.92029 0.96840 1.05302 1.21131 0.89037 1.00873
1.01554 1.19954 0.87746 1.00109 1.07891 1.98335 1.28664 1.84012
1.90943 1.21824 0.85766 0.99562 1.03018 1.42720 1.06007 1.24986
1.39791 0.72740 1.22313 0.98293 0.97850 0.85374 1.21928 0.96451
1.01623 0.96408 1.21400 0.94326 1.00338 0.95130 0.90950 1.20738
0.97337 0.94137 0.84438 1.42722 1.66318 1.28418 1.02645 1.19063
1.28568 1.07826 0.81862 0.89249 1.24679 1.00756 0.98648 0.95130
1.69696 1.50856 1.40598 0.97061 0.86562 0.80581 0.84544 0.76905
1.21104 1.21694 1.20449 0.91054 0.92719 0.92479 0.88722 0.91226
0.82618 0.80140 0.90744 0.89756 0.89837 0.90978 0.95588 0.94840
0.80836 0.93030
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 49.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.58 8.82 37.16 0.33 -1.26 16
2 C -0.10 -1.12 2.40 -90.72 -0.22 -1.34 16
3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
4 C 0.12 1.28 5.69 -3.93 -0.02 1.26 16
5 N -0.60 -6.56 2.98 -174.57 -0.52 -7.08 16
6 C 0.59 7.35 7.63 -12.86 -0.10 7.25 16
7 O -0.53 -8.19 16.42 5.19 0.09 -8.11 16
8 C -0.03 -0.34 6.37 -81.98 -0.52 -0.86 16
9 C -0.10 -1.07 10.76 -39.09 -0.42 -1.49 16
10 C -0.12 -1.17 6.66 -39.94 -0.27 -1.44 16
11 Cl -0.05 -0.44 29.30 -51.86 -1.52 -1.95 16
12 C 0.04 0.26 11.87 -16.85 -0.20 0.06 16
13 N -0.53 -4.06 4.74 -9.35 -0.04 -4.11 16
14 H 0.43 2.28 6.47 -40.82 -0.26 2.02 16
15 C 0.08 0.79 5.57 -3.71 -0.02 0.77 16
16 C -0.13 -1.54 5.25 -26.61 -0.14 -1.68 16
17 C -0.09 -1.24 1.73 -90.58 -0.16 -1.40 16
18 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
19 C 0.16 2.87 5.41 -4.04 -0.02 2.84 16
20 N -0.76 -16.91 5.12 -59.91 -0.31 -17.22 16
21 C -0.24 -6.70 10.47 -15.06 -0.16 -6.86 16
22 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16
23 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16
24 N -0.93 -28.92 13.97 55.49 0.78 -28.14 16
25 Si 0.88 21.21 27.73 -169.99 -4.71 16.49 16
26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
27 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16
28 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16
29 H 0.07 0.85 6.29 -51.93 -0.33 0.52 16
30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
32 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16
33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16
34 H 0.16 1.65 8.06 -52.48 -0.42 1.23 16
35 H 0.18 0.78 8.06 -52.48 -0.42 0.35 16
36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
37 H 0.08 0.66 3.88 -51.93 -0.20 0.46 16
38 H 0.08 1.12 7.15 -51.93 -0.37 0.75 16
39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
41 H 0.03 0.61 6.14 -51.93 -0.32 0.29 16
42 H 0.36 7.71 4.71 -40.82 -0.19 7.52 16
43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16
LS Contribution 354.38 15.07 5.34 5.34
Total: -1.00 -33.25 354.38 -8.77 -42.02
By element:
Atomic # 1 Polarization: 12.76 SS G_CDS: -5.86 Total: 6.90 kcal
Atomic # 6 Polarization: -2.13 SS G_CDS: -2.01 Total: -4.14 kcal
Atomic # 7 Polarization: -56.45 SS G_CDS: -0.10 Total: -56.55 kcal
Atomic # 8 Polarization: -8.19 SS G_CDS: 0.09 Total: -8.11 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -4.71 Total: 16.49 kcal
Atomic # 17 Polarization: -0.44 SS G_CDS: -1.52 Total: -1.95 kcal
Total LS contribution 5.34 Total: 5.34 kcal
Total: -33.25 -8.77 -42.02 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001183849448.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.438 kcal
(2) G-P(sol) polarization free energy of solvation -33.247 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.191 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.418 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.21 seconds