Wall clock time and date at job start Tue Mar 31 2020 14:47:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08996 * 109.49542 * 2 1
4 4 C 1.52764 * 109.58846 * 240.04736 * 2 1 3
5 5 N 1.46929 * 109.00361 * 185.53613 * 4 2 1
6 6 C 1.34773 * 120.62906 * 233.58020 * 5 4 2
7 7 O 1.21700 * 120.00112 * 359.60752 * 6 5 4
8 8 C 1.46669 * 119.99917 * 179.87579 * 6 5 4
9 9 C 1.37897 * 126.22227 * 208.70876 * 8 6 5
10 10 C 1.39890 * 107.09267 * 179.88529 * 9 8 6
11 11 Cl 1.73600 * 126.07194 * 180.12700 * 10 9 8
12 12 C 1.35510 * 107.85197 * 0.38141 * 10 9 8
13 13 N 1.35631 * 108.85410 * 359.76336 * 12 10 9
14 14 H 0.97004 * 125.67702 * 180.02562 * 13 12 10
15 15 C 1.46920 * 118.74003 * 53.31006 * 5 4 2
16 16 C 1.53197 * 108.77684 * 306.64224 * 15 5 4
17 17 C 1.53035 * 109.49633 * 120.06497 * 2 1 3
18 18 H 1.09000 * 109.45279 * 61.33462 * 17 2 1
19 19 C 1.52997 * 109.45990 * 301.36838 * 17 2 1
20 20 N 1.46501 * 109.47226 * 174.93404 * 19 17 2
21 21 C 1.36939 * 120.00297 * 180.02562 * 20 19 17
22 22 H 1.08001 * 119.99962 * 359.97438 * 21 20 19
23 23 C 1.38809 * 120.00166 * 179.97438 * 21 20 19
24 24 N 1.31616 * 120.00174 * 179.97438 * 23 21 20
25 25 Si 1.86807 * 120.00111 * 359.97438 * 23 21 20
26 26 H 1.48504 * 109.47031 * 89.99607 * 25 23 21
27 27 H 1.48495 * 109.47259 * 210.00095 * 25 23 21
28 28 H 1.48504 * 109.46944 * 330.00110 * 25 23 21
29 29 H 1.08999 * 109.47503 * 299.93541 * 1 2 3
30 30 H 1.09005 * 109.47242 * 59.93369 * 1 2 3
31 31 H 1.09000 * 109.47395 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.50744 * 65.65450 * 4 2 1
33 33 H 1.08999 * 109.42999 * 305.37208 * 4 2 1
34 34 H 1.08005 * 126.45501 * 0.02624 * 9 8 6
35 35 H 1.08005 * 125.57626 * 179.72755 * 12 10 9
36 36 H 1.09005 * 109.58747 * 66.42925 * 15 5 4
37 37 H 1.08997 * 109.59180 * 186.71066 * 15 5 4
38 38 H 1.09000 * 109.49864 * 174.58677 * 16 15 5
39 39 H 1.08994 * 109.49596 * 294.65087 * 16 15 5
40 40 H 1.08997 * 109.47418 * 294.92962 * 19 17 2
41 41 H 1.09003 * 109.47085 * 54.93593 * 19 17 2
42 42 H 0.97004 * 119.99869 * 0.02562 * 20 19 17
43 43 H 0.97001 * 120.00182 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0422 -0.7186 -1.2470
5 7 3.5053 -0.8283 -1.1690
6 6 4.2818 -0.3846 -2.1771
7 8 3.7721 0.1062 -3.1673
8 6 5.7411 -0.4985 -2.0835
9 6 6.6635 0.3349 -2.6805
10 6 7.9324 -0.1357 -2.3266
11 17 9.4501 0.5546 -2.8101
12 6 7.7665 -1.2294 -1.5439
13 7 6.4390 -1.4601 -1.3888
14 1 6.0466 -2.1824 -0.8737
15 6 4.1059 -1.4255 0.0315
16 6 3.5708 -0.6939 1.2666
17 6 2.0407 -0.7227 1.2485
18 1 1.6971 -1.7571 1.2353
19 6 1.5030 -0.0230 2.4983
20 7 1.8910 -0.7834 3.6889
21 6 1.5188 -0.3462 4.9321
22 1 0.9395 0.5595 5.0349
23 6 1.8860 -1.0670 6.0600
24 7 1.5287 -0.6466 7.2549
25 14 2.8874 -2.6340 5.8822
26 1 4.3347 -2.3041 5.9262
27 1 2.5570 -3.5615 6.9937
28 1 2.5667 -3.2818 4.5849
29 1 -0.3634 0.5128 0.8905
30 1 -0.3634 0.5149 -0.8894
31 1 -0.3634 -1.0276 -0.0005
32 1 1.7652 -0.1497 -2.1345
33 1 1.6031 -1.7150 -1.2974
34 1 6.4469 1.1911 -3.3022
35 1 8.5614 -1.8211 -1.1143
36 1 3.8386 -2.4808 0.0875
37 1 5.1903 -1.3252 -0.0138
38 1 3.9334 -1.1884 2.1678
39 1 3.9158 0.3399 1.2550
40 1 1.9182 0.9830 2.5586
41 1 0.4160 0.0353 2.4428
42 1 2.4117 -1.5967 3.5965
43 1 1.7856 -1.1501 8.0432
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001183849448.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:47:49
Heat of formation + Delta-G solvation = 6.089616 kcal
Electronic energy + Delta-G solvation = -25550.525875 eV
Core-core repulsion = 21850.126938 eV
Total energy + Delta-G solvation = -3700.398936 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.130 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-42.71761 -40.91007 -39.20672 -37.35917 -36.76239 -35.15252 -33.67666 -32.42288
-32.07800 -30.64706 -28.70600 -27.66187 -25.56696 -24.19479 -23.15946 -22.55612
-21.97671 -21.30898 -20.90415 -19.63296 -18.87978 -17.62633 -16.97174 -16.64544
-16.57972 -16.00515 -15.67211 -15.58463 -15.30985 -15.12062 -14.86516 -14.63474
-14.51191 -14.35025 -14.03345 -13.92600 -13.89895 -13.28788 -13.18367 -12.99967
-12.89192 -12.76684 -12.65113 -12.17694 -12.03357 -11.85474 -11.82543 -11.67632
-11.58252 -11.27412 -11.17014 -10.93116 -10.00459 -9.80135 -9.29017 -9.26667
-8.01694 -5.35693 0.32393 1.20318 1.36866 1.40251 1.43454 1.51097
1.69925 1.94373 2.34130 2.50066 3.29586 3.37660 3.51286 3.62387
3.76750 3.89387 3.99099 4.06995 4.16008 4.16473 4.27572 4.42157
4.50448 4.55788 4.62920 4.65196 4.74023 4.79693 4.84402 4.94488
5.04570 5.06511 5.16422 5.21835 5.29969 5.32659 5.41933 5.51781
5.56663 5.76718 6.16999 6.21843 6.26439 6.91737 7.09411 7.84390
8.05860 9.20256
Molecular weight = 325.13amu
Principal moments of inertia in cm(-1)
A = 0.013135 B = 0.003183 C = 0.002706
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2131.251041 B = 8794.410532 C =10344.139015
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.089 4.089
3 H 0.062 0.938
4 C 0.122 3.878
5 N -0.601 5.601
6 C 0.588 3.412
7 O -0.568 6.568
8 C -0.050 4.050
9 C -0.114 4.114
10 C -0.146 4.146
11 Cl -0.049 7.049
12 C 0.062 3.938
13 N -0.518 5.518
14 H 0.441 0.559
15 C 0.090 3.910
16 C -0.125 4.125
17 C -0.082 4.082
18 H 0.084 0.916
19 C 0.158 3.842
20 N -0.753 5.753
21 C -0.236 4.236
22 H 0.049 0.951
23 C -0.069 4.069
24 N -0.988 5.988
25 Si 0.959 3.041
26 H -0.274 1.274
27 H -0.299 1.299
28 H -0.243 1.243
29 H 0.053 0.947
30 H 0.067 0.933
31 H 0.066 0.934
32 H 0.086 0.914
33 H 0.090 0.910
34 H 0.145 0.855
35 H 0.220 0.780
36 H 0.104 0.896
37 H 0.102 0.898
38 H 0.078 0.922
39 H 0.056 0.944
40 H 0.012 0.988
41 H 0.030 0.970
42 H 0.368 0.632
43 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.273 -6.002 -22.361 26.204
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.109 4.109
3 H 0.080 0.920
4 C 0.000 4.000
5 N -0.332 5.332
6 C 0.378 3.622
7 O -0.447 6.447
8 C -0.163 4.163
9 C -0.141 4.141
10 C -0.179 4.179
11 Cl -0.021 7.021
12 C -0.076 4.076
13 N -0.122 5.122
14 H 0.288 0.712
15 C -0.032 4.032
16 C -0.164 4.164
17 C -0.101 4.101
18 H 0.102 0.898
19 C 0.032 3.968
20 N -0.399 5.399
21 C -0.367 4.367
22 H 0.067 0.933
23 C -0.260 4.260
24 N -0.639 5.639
25 Si 0.785 3.215
26 H -0.200 1.200
27 H -0.226 1.226
28 H -0.167 1.167
29 H 0.072 0.928
30 H 0.086 0.914
31 H 0.086 0.914
32 H 0.104 0.896
33 H 0.108 0.892
34 H 0.163 0.837
35 H 0.236 0.764
36 H 0.122 0.878
37 H 0.119 0.881
38 H 0.097 0.903
39 H 0.075 0.925
40 H 0.030 0.970
41 H 0.048 0.952
42 H 0.202 0.798
43 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 11.877 -5.683 -22.705 26.246
hybrid contribution 0.256 -0.414 0.895 1.018
sum 12.133 -6.097 -21.810 25.692
Atomic orbital electron populations
1.21811 0.93344 1.02904 1.02268 1.21277 0.96931 0.99285 0.93382
0.91976 1.21664 0.77928 1.02005 0.98407 1.48102 1.07442 1.59911
1.17773 1.17252 0.84827 0.77581 0.82551 1.90823 1.74542 1.47046
1.32332 1.19972 0.91153 0.98239 1.06949 1.21219 0.90153 1.01006
1.01723 1.20076 0.87277 1.01275 1.09259 1.98332 1.28447 1.84210
1.91081 1.22396 0.86163 0.98308 1.00738 1.42665 1.05921 1.24537
1.39074 0.71163 1.22414 0.99137 0.98698 0.82991 1.21880 0.95415
1.01259 0.97798 1.21294 0.95228 1.00364 0.93233 0.89770 1.20871
0.97226 0.93627 0.85053 1.42647 1.66235 1.29015 1.02026 1.19014
1.27164 1.06321 0.84238 0.93286 1.25613 1.02767 1.03103 0.94489
1.69908 1.53091 1.42693 0.98163 0.85351 0.78766 0.79256 0.78087
1.19983 1.22623 1.16668 0.92762 0.91377 0.91447 0.89607 0.89162
0.83682 0.76396 0.87779 0.88090 0.90347 0.92489 0.97025 0.95210
0.79799 0.93368
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.93 8.82 71.98 0.63 -2.29 16
2 C -0.09 -1.92 2.40 -10.86 -0.03 -1.94 16
3 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16
4 C 0.12 2.35 5.69 86.22 0.49 2.84 16
5 N -0.60 -11.64 2.98 -824.44 -2.46 -14.09 16
6 C 0.59 13.93 7.63 86.44 0.66 14.59 16
7 O -0.57 -17.63 16.42 -4.35 -0.07 -17.70 16
8 C -0.05 -0.98 6.37 40.35 0.26 -0.72 16
9 C -0.11 -2.38 10.76 22.59 0.24 -2.14 16
10 C -0.15 -2.49 6.66 22.04 0.15 -2.34 16
11 Cl -0.05 -0.82 29.30 -2.72 -0.08 -0.90 16
12 C 0.06 0.69 11.87 83.47 0.99 1.68 16
13 N -0.52 -6.09 4.74 -183.50 -0.87 -6.96 16
14 H 0.44 2.68 6.47 -92.71 -0.60 2.08 16
15 C 0.09 1.34 5.57 86.37 0.48 1.82 16
16 C -0.13 -2.75 5.25 30.67 0.16 -2.59 16
17 C -0.08 -2.03 1.73 -10.77 -0.02 -2.05 16
18 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16
19 C 0.16 5.59 5.41 86.38 0.47 6.06 16
20 N -0.75 -32.94 5.12 -343.46 -1.76 -34.70 16
21 C -0.24 -13.22 10.47 84.03 0.88 -12.34 16
22 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16
23 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16
24 N -0.99 -62.76 13.97 21.65 0.30 -62.46 16
25 Si 0.96 42.81 27.73 68.60 1.90 44.72 16
26 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16
27 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16
28 H -0.24 -9.30 6.52 99.48 0.65 -8.65 16
29 H 0.05 1.27 6.29 -2.39 -0.02 1.26 16
30 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16
31 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16
32 H 0.09 1.88 7.00 -2.39 -0.02 1.86 16
33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16
34 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16
35 H 0.22 0.72 8.06 -2.91 -0.02 0.70 16
36 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16
37 H 0.10 1.18 3.88 -2.39 -0.01 1.17 16
38 H 0.08 1.84 7.15 -2.39 -0.02 1.83 16
39 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16
40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16
41 H 0.03 1.09 6.14 -2.39 -0.01 1.08 16
42 H 0.37 14.73 4.71 -92.71 -0.44 14.29 16
43 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16
Total: -1.00 -75.18 354.38 2.76 -72.42
By element:
Atomic # 1 Polarization: 22.62 SS G_CDS: -0.04 Total: 22.57 kcal
Atomic # 6 Polarization: -8.74 SS G_CDS: 5.83 Total: -2.90 kcal
Atomic # 7 Polarization: -113.43 SS G_CDS: -4.78 Total: -118.21 kcal
Atomic # 8 Polarization: -17.63 SS G_CDS: -0.07 Total: -17.70 kcal
Atomic # 14 Polarization: 42.81 SS G_CDS: 1.90 Total: 44.72 kcal
Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal
Total: -75.18 2.76 -72.42 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001183849448.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.512 kcal
(2) G-P(sol) polarization free energy of solvation -75.182 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.330 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.422 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.090 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds