Wall clock time and date at job start Tue Mar 31 2020 13:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86795 * 120.00314 * 2 1 4 4 H 1.48498 * 109.47583 * 275.38595 * 3 2 1 5 5 H 1.48502 * 109.47168 * 35.38572 * 3 2 1 6 6 H 1.48502 * 109.47448 * 155.38407 * 3 2 1 7 7 C 1.40108 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99271 * 342.08054 * 7 2 1 9 9 C 1.40749 * 120.00434 * 162.08206 * 7 2 1 10 10 C 1.40882 * 120.61899 * 329.86967 * 9 7 2 11 11 C 1.36314 * 119.95626 * 179.97438 * 10 9 7 12 12 C 1.50697 * 119.33037 * 180.02562 * 11 10 9 13 13 F 1.39900 * 109.47276 * 179.97438 * 12 11 10 14 14 F 1.39906 * 109.46818 * 299.98063 * 12 11 10 15 15 F 1.39900 * 109.47219 * 59.97453 * 12 11 10 16 16 C 1.38823 * 121.33903 * 0.02562 * 11 10 9 17 17 C 1.37876 * 121.30402 * 359.97438 * 16 11 10 18 18 C 1.39559 * 119.91986 * 0.02562 * 17 16 11 19 19 C 1.47128 * 120.63874 * 179.97438 * 18 17 16 20 20 C 1.33162 * 120.00204 * 0.02562 * 19 18 17 21 21 C 1.50704 * 119.99887 * 180.02562 * 20 19 18 22 22 C 1.53123 * 109.51912 * 239.87361 * 21 20 19 23 23 C 1.53038 * 109.27253 * 182.50777 * 22 21 20 24 24 N 1.46844 * 109.57835 * 59.08258 * 23 22 21 25 25 C 1.46849 * 111.20000 * 298.28958 * 24 23 22 26 26 C 1.53042 * 109.52229 * 61.73875 * 25 24 23 27 27 H 0.97006 * 120.00057 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.01930 * 359.95559 * 10 9 7 29 29 H 1.08001 * 119.34527 * 179.97438 * 16 11 10 30 30 H 1.07998 * 120.04176 * 179.72660 * 17 16 11 31 31 H 1.08001 * 120.00050 * 180.02562 * 19 18 17 32 32 H 1.08001 * 119.99746 * 359.97438 * 20 19 18 33 33 H 1.08993 * 109.52414 * 359.97438 * 21 20 19 34 34 H 1.09002 * 109.49977 * 302.38057 * 22 21 20 35 35 H 1.09000 * 109.50767 * 62.49961 * 22 21 20 36 36 H 1.09002 * 109.41097 * 299.06500 * 23 22 21 37 37 H 1.09002 * 109.45713 * 179.12587 * 23 22 21 38 38 H 1.00902 * 111.00393 * 62.38581 * 24 23 22 39 39 H 1.09000 * 109.46140 * 301.72780 * 25 24 23 40 40 H 1.08994 * 109.46782 * 181.75888 * 25 24 23 41 41 H 1.08999 * 109.50401 * 180.88099 * 26 25 24 42 42 H 1.09000 * 109.53169 * 60.78282 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.3754 2.1121 -1.3938 5 1 1.5006 2.6171 0.8108 6 1 3.5914 1.4099 0.5832 7 6 2.0081 -1.2133 -0.0005 8 1 1.5073 -2.1261 0.2869 9 6 3.3644 -1.2428 -0.3755 10 6 3.8717 -0.3153 -1.3067 11 6 5.1877 -0.3557 -1.6598 12 6 5.7155 0.6436 -2.6567 13 9 7.0800 0.4169 -2.8665 14 9 5.0278 0.5028 -3.8669 15 9 5.5287 1.9389 -2.1622 16 6 6.0515 -1.2988 -1.1198 17 6 5.6122 -2.2315 -0.2044 18 6 4.2750 -2.2386 0.1951 19 6 3.7891 -3.2271 1.1705 20 6 4.6280 -4.1262 1.6815 21 6 4.1301 -5.1391 2.6802 22 6 4.8993 -4.9822 3.9949 23 6 4.4334 -6.0533 4.9837 24 7 4.6685 -7.3856 4.4128 25 6 3.9018 -7.5757 3.1748 26 6 4.3530 -6.5510 2.1314 27 1 -0.4850 0.8401 0.0004 28 1 3.2183 0.4272 -1.7406 29 1 7.0882 -1.3019 -1.4228 30 1 6.3010 -2.9588 0.1995 31 1 2.7521 -3.2235 1.4721 32 1 5.6649 -4.1301 1.3797 33 1 3.0667 -4.9813 2.8598 34 1 5.9667 -5.1001 3.8082 35 1 4.7093 -3.9932 4.4120 36 1 3.3691 -5.9255 5.1813 37 1 4.9902 -5.9541 5.9155 38 1 5.6527 -7.5435 4.2563 39 1 2.8400 -7.4408 3.3808 40 1 4.0724 -8.5822 2.7928 41 1 3.7729 -6.6822 1.2180 42 1 5.4114 -6.6941 1.9140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243895500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:26 Heat of formation + Delta-G solvation = -139.843787 kcal Electronic energy + Delta-G solvation = -27202.673030 eV Core-core repulsion = 22924.229305 eV Total energy + Delta-G solvation = -4278.443726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.64990 -47.17581 -47.10432 -38.95683 -38.09794 -34.45315 -34.05904 -31.75697 -30.82729 -30.82053 -28.82694 -25.58245 -25.25763 -23.22211 -22.83231 -22.11980 -20.82362 -19.94196 -18.85221 -18.27383 -17.97299 -17.67990 -16.92962 -16.22441 -15.21309 -14.87227 -14.75862 -14.69274 -14.25857 -14.04619 -13.93077 -13.72512 -13.58584 -13.52003 -13.34426 -13.31051 -13.30001 -12.88424 -12.55031 -12.31277 -12.25737 -12.02239 -11.78621 -11.61847 -11.23243 -11.20679 -11.03230 -10.77984 -10.66910 -10.55792 -10.39840 -9.99460 -9.91235 -9.42157 -9.35226 -8.42001 -8.00792 -7.41274 -7.30275 -4.76636 1.54665 2.37068 2.94732 2.99574 3.12118 3.20188 3.27011 3.74180 4.16800 4.24831 4.41015 4.66016 4.74162 4.85380 5.02215 5.08030 5.15046 5.21330 5.37953 5.39515 5.48337 5.61777 5.81775 5.82610 5.84091 5.96711 5.99170 6.00325 6.06222 6.22719 6.23991 6.33945 6.41568 6.48147 6.77649 6.93990 6.94028 7.02067 7.16455 7.26985 7.28769 7.45183 7.59875 7.76403 7.95002 8.27246 8.40006 9.68491 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.013286 B = 0.003581 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.958704 B = 7818.124998 C = 9256.710540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.084 3.916 3 Si 0.900 3.100 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.238 1.238 7 C -0.416 4.416 8 H 0.102 0.898 9 C 0.102 3.898 10 C -0.196 4.196 11 C -0.123 4.123 12 C 0.499 3.501 13 F -0.185 7.185 14 F -0.184 7.184 15 F -0.186 7.186 16 C -0.218 4.218 17 C -0.060 4.060 18 C -0.157 4.157 19 C -0.049 4.049 20 C -0.215 4.215 21 C -0.044 4.044 22 C -0.148 4.148 23 C 0.055 3.945 24 N -0.689 5.689 25 C 0.055 3.945 26 C -0.147 4.147 27 H 0.293 0.707 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.338 0.662 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.949 -5.881 3.778 9.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.161 1.161 7 C -0.442 4.442 8 H 0.119 0.881 9 C 0.099 3.901 10 C -0.215 4.215 11 C -0.124 4.124 12 C 0.445 3.555 13 F -0.166 7.166 14 F -0.165 7.165 15 F -0.167 7.167 16 C -0.237 4.237 17 C -0.078 4.078 18 C -0.158 4.158 19 C -0.067 4.067 20 C -0.233 4.233 21 C -0.063 4.063 22 C -0.187 4.187 23 C -0.075 4.075 24 N -0.317 5.317 25 C -0.075 4.075 26 C -0.187 4.187 27 H 0.104 0.896 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.155 0.845 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.162 -6.077 4.179 9.611 hybrid contribution 0.807 1.714 -1.057 2.169 sum 6.969 -4.363 3.122 8.795 Atomic orbital electron populations 1.69626 1.08215 1.31187 1.31173 1.26296 0.94842 1.02056 0.90722 0.86449 0.81753 0.79514 0.79820 1.18841 1.20818 1.16118 1.19489 0.92584 0.96325 1.35809 0.88050 1.18603 0.92453 0.89882 0.89178 1.20454 0.93677 1.04369 1.02960 1.19217 0.96102 0.97631 0.99461 1.18860 0.74906 0.80849 0.80897 1.93095 1.33607 1.94539 1.95406 1.93167 1.79621 1.95762 1.47980 1.93157 1.94974 1.40962 1.87643 1.19942 0.98343 1.00170 1.05268 1.20740 0.94659 0.96629 0.95730 1.19958 0.92347 1.01655 1.01849 1.21565 0.98676 0.92512 0.93968 1.22944 0.99269 0.99076 1.02014 1.20084 0.99489 0.93337 0.93383 1.22271 1.00022 1.00243 0.96144 1.22045 1.01748 0.86858 0.96812 1.60707 1.13476 1.28816 1.28667 1.22046 0.98668 0.98229 0.88515 1.22268 1.01588 0.95293 0.99513 0.89643 0.87236 0.87354 0.87369 0.86979 0.87983 0.91206 0.92226 0.91274 0.90997 0.91030 0.84532 0.90988 0.91025 0.91312 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.00 13.92 55.56 0.77 -18.23 16 2 C 0.08 2.02 5.41 -17.31 -0.09 1.93 16 3 Si 0.90 19.62 24.53 -169.99 -4.17 15.45 16 4 H -0.26 -5.69 6.72 56.52 0.38 -5.31 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.24 -5.38 6.86 56.52 0.39 -4.99 16 7 C -0.42 -10.17 8.93 -37.93 -0.34 -10.51 16 8 H 0.10 2.55 7.02 -52.48 -0.37 2.18 16 9 C 0.10 2.41 5.26 -104.62 -0.55 1.86 16 10 C -0.20 -4.52 6.59 -39.27 -0.26 -4.78 16 11 C -0.12 -2.63 5.34 -105.10 -0.56 -3.19 16 12 C 0.50 9.82 3.29 36.00 0.12 9.94 16 13 F -0.19 -3.35 15.89 2.25 0.04 -3.31 16 14 F -0.18 -3.59 17.22 2.25 0.04 -3.55 16 15 F -0.19 -3.69 17.21 2.25 0.04 -3.65 16 16 C -0.22 -4.36 9.37 -39.50 -0.37 -4.73 16 17 C -0.06 -1.17 9.41 -39.22 -0.37 -1.54 16 18 C -0.16 -3.34 6.07 -102.47 -0.62 -3.96 16 19 C -0.05 -0.93 9.12 -37.74 -0.34 -1.27 16 20 C -0.21 -3.40 8.23 -36.07 -0.30 -3.69 16 21 C -0.04 -0.58 2.55 -91.65 -0.23 -0.82 16 22 C -0.15 -1.71 5.35 -26.65 -0.14 -1.85 16 23 C 0.05 0.57 6.55 -3.83 -0.03 0.54 16 24 N -0.69 -7.02 6.87 -113.81 -0.78 -7.80 16 25 C 0.06 0.56 6.55 -3.83 -0.03 0.54 16 26 C -0.15 -1.70 5.35 -26.65 -0.14 -1.84 16 27 H 0.29 6.44 8.29 -40.82 -0.34 6.10 16 28 H 0.11 2.56 4.78 -52.49 -0.25 2.31 16 29 H 0.11 1.94 7.06 -52.49 -0.37 1.57 16 30 H 0.11 1.83 6.21 -52.49 -0.33 1.51 16 31 H 0.11 2.17 6.61 -52.49 -0.35 1.83 16 32 H 0.10 1.58 6.08 -52.49 -0.32 1.26 16 33 H 0.07 0.98 7.81 -51.93 -0.41 0.57 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.34 3.07 8.86 -39.29 -0.35 2.72 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -24.08 347.55 -8.37 -32.45 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.29 Total: 6.80 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -4.26 Total: -23.39 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: -0.01 Total: -26.03 kcal Atomic # 9 Polarization: -10.63 SS G_CDS: 0.11 Total: -10.52 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.17 Total: 15.45 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -24.08 -8.37 -32.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243895500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.392 kcal (2) G-P(sol) polarization free energy of solvation -24.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds