Wall clock time and date at job start Tue Mar 31 2020 13:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86795 * 120.00314 * 2 1 4 4 H 1.48498 * 109.47583 * 275.38595 * 3 2 1 5 5 H 1.48502 * 109.47168 * 35.38572 * 3 2 1 6 6 H 1.48502 * 109.47448 * 155.38407 * 3 2 1 7 7 C 1.40108 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99271 * 342.08054 * 7 2 1 9 9 C 1.40749 * 120.00434 * 162.08206 * 7 2 1 10 10 C 1.40882 * 120.61899 * 329.86967 * 9 7 2 11 11 C 1.36314 * 119.95626 * 179.97438 * 10 9 7 12 12 C 1.50697 * 119.33037 * 180.02562 * 11 10 9 13 13 F 1.39900 * 109.47276 * 179.97438 * 12 11 10 14 14 F 1.39906 * 109.46818 * 299.98063 * 12 11 10 15 15 F 1.39900 * 109.47219 * 59.97453 * 12 11 10 16 16 C 1.38823 * 121.33903 * 0.02562 * 11 10 9 17 17 C 1.37876 * 121.30402 * 359.97438 * 16 11 10 18 18 C 1.39559 * 119.91986 * 0.02562 * 17 16 11 19 19 C 1.47128 * 120.63874 * 179.97438 * 18 17 16 20 20 C 1.33162 * 120.00204 * 0.02562 * 19 18 17 21 21 C 1.50704 * 119.99887 * 180.02562 * 20 19 18 22 22 C 1.53123 * 109.51912 * 239.87361 * 21 20 19 23 23 C 1.53038 * 109.27253 * 182.50777 * 22 21 20 24 24 N 1.46844 * 109.57835 * 59.08258 * 23 22 21 25 25 C 1.46849 * 111.20000 * 298.28958 * 24 23 22 26 26 C 1.53042 * 109.52229 * 61.73875 * 25 24 23 27 27 H 0.97006 * 120.00057 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.01930 * 359.95559 * 10 9 7 29 29 H 1.08001 * 119.34527 * 179.97438 * 16 11 10 30 30 H 1.07998 * 120.04176 * 179.72660 * 17 16 11 31 31 H 1.08001 * 120.00050 * 180.02562 * 19 18 17 32 32 H 1.08001 * 119.99746 * 359.97438 * 20 19 18 33 33 H 1.08993 * 109.52414 * 359.97438 * 21 20 19 34 34 H 1.09002 * 109.49977 * 302.38057 * 22 21 20 35 35 H 1.09000 * 109.50767 * 62.49961 * 22 21 20 36 36 H 1.09002 * 109.41097 * 299.06500 * 23 22 21 37 37 H 1.09002 * 109.45713 * 179.12587 * 23 22 21 38 38 H 1.00902 * 111.00393 * 62.38581 * 24 23 22 39 39 H 1.09000 * 109.46140 * 301.72780 * 25 24 23 40 40 H 1.08994 * 109.46782 * 181.75888 * 25 24 23 41 41 H 1.08999 * 109.50401 * 180.88099 * 26 25 24 42 42 H 1.09000 * 109.53169 * 60.78282 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.3754 2.1121 -1.3938 5 1 1.5006 2.6171 0.8108 6 1 3.5914 1.4099 0.5832 7 6 2.0081 -1.2133 -0.0005 8 1 1.5073 -2.1261 0.2869 9 6 3.3644 -1.2428 -0.3755 10 6 3.8717 -0.3153 -1.3067 11 6 5.1877 -0.3557 -1.6598 12 6 5.7155 0.6436 -2.6567 13 9 7.0800 0.4169 -2.8665 14 9 5.0278 0.5028 -3.8669 15 9 5.5287 1.9389 -2.1622 16 6 6.0515 -1.2988 -1.1198 17 6 5.6122 -2.2315 -0.2044 18 6 4.2750 -2.2386 0.1951 19 6 3.7891 -3.2271 1.1705 20 6 4.6280 -4.1262 1.6815 21 6 4.1301 -5.1391 2.6802 22 6 4.8993 -4.9822 3.9949 23 6 4.4334 -6.0533 4.9837 24 7 4.6685 -7.3856 4.4128 25 6 3.9018 -7.5757 3.1748 26 6 4.3530 -6.5510 2.1314 27 1 -0.4850 0.8401 0.0004 28 1 3.2183 0.4272 -1.7406 29 1 7.0882 -1.3019 -1.4228 30 1 6.3010 -2.9588 0.1995 31 1 2.7521 -3.2235 1.4721 32 1 5.6649 -4.1301 1.3797 33 1 3.0667 -4.9813 2.8598 34 1 5.9667 -5.1001 3.8082 35 1 4.7093 -3.9932 4.4120 36 1 3.3691 -5.9255 5.1813 37 1 4.9902 -5.9541 5.9155 38 1 5.6527 -7.5435 4.2563 39 1 2.8400 -7.4408 3.3808 40 1 4.0724 -8.5822 2.7928 41 1 3.7729 -6.6822 1.2180 42 1 5.4114 -6.6941 1.9140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243895500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:26 Heat of formation + Delta-G solvation = -151.095095 kcal Electronic energy + Delta-G solvation = -27203.160924 eV Core-core repulsion = 22924.229305 eV Total energy + Delta-G solvation = -4278.931619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.135 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.19528 -48.69402 -48.66591 -40.09167 -39.59180 -35.83810 -35.75277 -33.11668 -32.50546 -31.70862 -30.22314 -27.32302 -26.69812 -24.45816 -23.72039 -23.68762 -22.24300 -21.06343 -20.32237 -19.94727 -19.52722 -19.24315 -18.61982 -17.35161 -16.83159 -16.32802 -16.20826 -15.59877 -15.54216 -15.47717 -15.33614 -15.15127 -15.11274 -14.96556 -14.85293 -14.83821 -14.52133 -14.31456 -14.16197 -13.85142 -13.54176 -13.19492 -13.13818 -12.96034 -12.82416 -12.68679 -12.20508 -12.16416 -12.11615 -11.75293 -11.59360 -11.52267 -11.42002 -11.14121 -10.82877 -9.71313 -9.26954 -9.08375 -8.97766 -6.57140 -0.06895 0.66041 1.19008 1.25291 1.36868 1.63703 1.69373 1.98810 2.44386 2.80772 3.11007 3.19968 3.43876 3.53951 3.71200 3.99367 4.01476 4.07664 4.26475 4.26874 4.40603 4.43524 4.50743 4.58133 4.64128 4.70890 4.75018 4.92978 4.95080 5.01565 5.07792 5.11052 5.15248 5.27325 5.27356 5.37373 5.41716 5.61474 5.62037 5.90126 5.96300 6.10939 6.13817 6.15643 6.53451 6.55624 6.62444 7.97452 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.013286 B = 0.003581 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.958704 B = 7818.124998 C = 9256.710540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.059 3.941 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.251 1.251 7 C -0.449 4.449 8 H 0.076 0.924 9 C 0.082 3.918 10 C -0.215 4.215 11 C -0.142 4.142 12 C 0.506 3.494 13 F -0.172 7.172 14 F -0.184 7.184 15 F -0.188 7.188 16 C -0.195 4.195 17 C -0.069 4.069 18 C -0.147 4.147 19 C -0.093 4.093 20 C -0.162 4.162 21 C -0.051 4.051 22 C -0.141 4.141 23 C 0.059 3.941 24 N -0.690 5.690 25 C 0.059 3.941 26 C -0.141 4.141 27 H 0.299 0.701 28 H 0.099 0.901 29 H 0.138 0.862 30 H 0.145 0.855 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.348 0.652 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.241 -7.382 4.519 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.160 4.160 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.175 1.175 7 C -0.477 4.477 8 H 0.094 0.906 9 C 0.079 3.921 10 C -0.234 4.234 11 C -0.143 4.143 12 C 0.452 3.548 13 F -0.153 7.153 14 F -0.166 7.166 15 F -0.169 7.169 16 C -0.215 4.215 17 C -0.087 4.087 18 C -0.148 4.148 19 C -0.112 4.112 20 C -0.180 4.180 21 C -0.070 4.070 22 C -0.181 4.181 23 C -0.071 4.071 24 N -0.318 5.318 25 C -0.071 4.071 26 C -0.180 4.180 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.156 0.844 30 H 0.162 0.838 31 H 0.112 0.888 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.166 0.834 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.461 -7.582 4.922 13.085 hybrid contribution 0.058 1.914 -1.216 2.268 sum 9.518 -5.667 3.706 11.681 Atomic orbital electron populations 1.69638 1.08864 1.31990 1.33963 1.26697 0.95229 1.03565 0.90479 0.85860 0.80342 0.77847 0.79712 1.18923 1.19221 1.17497 1.19370 0.93604 0.95865 1.38862 0.90550 1.18804 0.92536 0.91104 0.89677 1.20415 0.94613 1.04764 1.03613 1.19436 0.95813 0.98744 1.00356 1.18581 0.75354 0.80385 0.80517 1.93118 1.32450 1.94440 1.95304 1.93167 1.79776 1.95743 1.47870 1.93154 1.95051 1.41012 1.87702 1.20411 0.99379 0.98371 1.03291 1.21109 0.94300 0.97485 0.95791 1.20390 0.92988 1.00518 1.00899 1.21425 0.98750 0.94658 0.96320 1.23332 0.99168 0.96519 0.99011 1.20198 0.99052 0.93840 0.93910 1.22217 1.00287 1.00429 0.95141 1.22015 1.01531 0.86438 0.97073 1.60693 1.14227 1.28482 1.28442 1.22017 0.98261 0.98594 0.88185 1.22212 1.02207 0.94116 0.99506 0.88954 0.88353 0.84400 0.83753 0.88780 0.86286 0.92619 0.91039 0.92084 0.91825 0.89392 0.83412 0.91815 0.89385 0.92117 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.27 13.92 21.86 0.30 -41.96 16 2 C 0.06 3.01 5.41 85.31 0.46 3.47 16 3 Si 0.94 41.68 24.53 68.60 1.68 43.37 16 4 H -0.26 -11.55 6.72 99.48 0.67 -10.88 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.25 -11.51 6.86 99.48 0.68 -10.83 16 7 C -0.45 -23.42 8.93 23.34 0.21 -23.21 16 8 H 0.08 4.20 7.02 -2.91 -0.02 4.18 16 9 C 0.08 3.96 5.26 -19.86 -0.10 3.85 16 10 C -0.21 -10.05 6.59 22.47 0.15 -9.90 16 11 C -0.14 -5.90 5.34 -20.17 -0.11 -6.01 16 12 C 0.51 19.05 3.29 71.23 0.23 19.28 16 13 F -0.17 -5.71 15.89 44.97 0.71 -4.99 16 14 F -0.18 -6.99 17.22 44.97 0.77 -6.22 16 15 F -0.19 -7.23 17.21 44.97 0.77 -6.45 16 16 C -0.20 -7.22 9.37 22.32 0.21 -7.01 16 17 C -0.07 -2.51 9.41 22.50 0.21 -2.30 16 18 C -0.15 -6.18 6.07 -18.47 -0.11 -6.29 16 19 C -0.09 -3.52 9.12 23.46 0.21 -3.31 16 20 C -0.16 -4.76 8.23 24.54 0.20 -4.56 16 21 C -0.05 -1.25 2.55 -11.46 -0.03 -1.28 16 22 C -0.14 -2.88 5.35 30.65 0.16 -2.72 16 23 C 0.06 1.06 6.55 86.33 0.57 1.63 16 24 N -0.69 -11.89 6.87 -514.00 -3.53 -15.42 16 25 C 0.06 1.06 6.55 86.33 0.57 1.62 16 26 C -0.14 -2.87 5.35 30.65 0.16 -2.71 16 27 H 0.30 13.87 8.29 -92.70 -0.77 13.10 16 28 H 0.10 4.74 4.78 -2.91 -0.01 4.73 16 29 H 0.14 4.28 7.06 -2.91 -0.02 4.26 16 30 H 0.14 4.15 6.21 -2.91 -0.02 4.13 16 31 H 0.09 3.88 6.61 -2.91 -0.02 3.86 16 32 H 0.12 3.14 6.08 -2.91 -0.02 3.12 16 33 H 0.06 1.55 7.81 -2.39 -0.02 1.53 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.35 4.97 8.86 -89.69 -0.79 4.17 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -53.55 347.55 3.92 -49.62 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.21 Total: 21.50 kcal Atomic # 6 Polarization: -42.43 SS G_CDS: 3.00 Total: -39.44 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -3.23 Total: -57.39 kcal Atomic # 9 Polarization: -19.93 SS G_CDS: 2.26 Total: -17.66 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.68 Total: 43.37 kcal Total: -53.55 3.92 -49.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243895500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.473 kcal (2) G-P(sol) polarization free energy of solvation -53.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds